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PDB: 457 results

7X0M
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Crystal structure of sugar binding protein CbpB complexed wtih cellopentaose from Clostridium thermocellum
Descriptor: CbpB, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Dong, S, Yao, X, Feng, Y.
Deposit date:2022-02-22
Release date:2022-09-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Deciphering Cellodextrin and Glucose Uptake in Clostridium thermocellum.
Mbio, 13, 2022
7X0N
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BU of 7x0n by Molmil
Crystal structure of sugar binding protein CbpB complexed wtih laminaribiose from Clostridium thermocellum
Descriptor: CbpB, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose
Authors:Dong, S, Yao, X, Feng, Y.
Deposit date:2022-02-22
Release date:2022-09-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Deciphering Cellodextrin and Glucose Uptake in Clostridium thermocellum.
Mbio, 13, 2022
7X0J
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BU of 7x0j by Molmil
Crystal structure of sugar binding protein CbpB complexed wtih cellobiose from Clostridium thermocellum
Descriptor: CbpB, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Dong, S, Yao, X, Feng, Y.
Deposit date:2022-02-22
Release date:2022-09-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Deciphering Cellodextrin and Glucose Uptake in Clostridium thermocellum.
Mbio, 13, 2022
8I22
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BU of 8i22 by Molmil
Acyl-ACP synthetase structure bound to pimelic acid monoethyl ester
Descriptor: 7-ethoxy-7-oxidanylidene-heptanoic acid, Acyl-acyl carrier protein synthetase
Authors:Huang, H, Wang, C, Chang, S, Cui, T, Xu, Y, Zhang, H, Zhou, C, Zhang, X, Feng, Y.
Deposit date:2023-01-13
Release date:2024-01-17
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.15 Å)
Cite:Acyl-ACP synthetase structure bound to pimelic acid monoethyl ester
To Be Published
8I35
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BU of 8i35 by Molmil
Acyl-ACP synthetase structure bound to oleic acid
Descriptor: Acyl-acyl carrier protein synthetase, OLEIC ACID
Authors:Huang, H, Wang, C, Chang, S, Cui, T, Xu, Y, Zhang, H, Zhou, C, Zhang, X, Feng, Y.
Deposit date:2023-01-16
Release date:2024-01-24
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Acyl-ACP synthetase structure bound to oleic acid
To Be Published
8I51
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Acyl-ACP synthetase structure bound to AMP-MC7
Descriptor: 7-methoxy-7-oxidanylidene-heptanoic acid, ADENOSINE MONOPHOSPHATE, Acyl-acyl carrier protein synthetase, ...
Authors:Huang, H, Wang, C, Chang, S, Cui, T, Xu, Y, Zhang, H, Zhou, C, Zhang, X, Feng, Y.
Deposit date:2023-01-21
Release date:2024-01-24
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Acyl-ACP synthetase structure bound to AMP-MC7
To Be Published
8I3I
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BU of 8i3i by Molmil
Acyl-ACP synthetase structure bound to AMP-PNP in the presence of MgCl2
Descriptor: Acyl-acyl carrier protein synthetase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Huang, H, Wang, C, Chang, S, Cui, T, Xu, Y, Zhang, H, Zhou, C, Zhang, X, Feng, Y.
Deposit date:2023-01-17
Release date:2024-01-24
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Acyl-ACP synthetase structure bound to AMP-PNP in the presence of MgCl2
To Be Published
8I6M
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Acyl-ACP synthetase structure bound to AMP-C18:1
Descriptor: ADENOSINE MONOPHOSPHATE, Acyl-acyl carrier protein synthetase, MAGNESIUM ION, ...
Authors:Huang, H, Wang, C, Chang, S, Cui, T, Xu, Y, Zhang, H, Zhou, C, Zhang, X, Feng, Y.
Deposit date:2023-01-28
Release date:2024-01-31
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Acyl-ACP synthetase structure bound to AMP-C18:1
To Be Published
8HZX
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Acyl-ACP synthetase structure-2
Descriptor: Acyl-acyl carrier protein synthetase
Authors:Huang, H, Wang, C, Chang, S, Cui, T, Xu, Y, Zhang, H, Zhou, C, Zhang, X, Feng, Y.
Deposit date:2023-01-09
Release date:2024-01-24
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Acyl-ACP synthetase structure-2
To Be Published
8I49
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Acyl-ACP synthetase structure bound to ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Acyl-acyl carrier protein synthetase
Authors:Huang, H, Wang, C, Chang, S, Cui, T, Xu, Y, Zhang, H, Zhou, C, Zhang, X, Feng, Y.
Deposit date:2023-01-18
Release date:2024-01-24
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.41 Å)
Cite:Acyl-ACP synthetase structure bound to ATP.
To Be Published
2FOX
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BU of 2fox by Molmil
CLOSTRIDIUM BEIJERINCKII FLAVODOXIN: SEMIQUINONE
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVODOXIN
Authors:Ludwig, M.L, Pattridge, K.A, Metzger, A.L, Dixon, M.M, Eren, M, Feng, Y, Swenson, R.
Deposit date:1997-01-08
Release date:1997-03-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Control of oxidation-reduction potentials in flavodoxin from Clostridium beijerinckii: the role of conformation changes.
Biochemistry, 36, 1997
7WE6
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BU of 7we6 by Molmil
Structure of Csy-AcrIF24-dsDNA
Descriptor: AcrIF24, CRISPR type I-F/YPEST-associated protein Csy2, CRISPR-associated protein Csy3, ...
Authors:Zhang, L, Feng, Y.
Deposit date:2021-12-22
Release date:2022-04-20
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Insights into the inhibition of type I-F CRISPR-Cas system by a multifunctional anti-CRISPR protein AcrIF24.
Nat Commun, 13, 2022
3QCS
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BU of 3qcs by Molmil
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 6-[2-Amino-6-(4-morpholinyl)-4-pyrimidinyl]-1H-indazol-3-amine
Descriptor: 3-phosphoinositide-dependent protein kinase 1, 6-[2-amino-6-(morpholin-4-yl)pyrimidin-4-yl]-2H-indazol-3-amine, GLYCEROL, ...
Authors:Medina, J.R, Becker, C.J, Blackledge, C.W, Duquenne, C, Feng, Y, Grant, S.W, Heerding, D, Li, W.H, Miller, W.H, Romeril, S.P, Scherzer, D, Shu, A, Bobko, M.A, Chadderton, A.R, Dumble, M, Gradiner, C.M, Gilbert, S, Liu, Q, Rabindran, S.K, Sudakin, V, Xiang, H, Brady, P.G, Campobasso, N, Ward, P, Axten, J.M.
Deposit date:2011-01-17
Release date:2011-03-09
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.487 Å)
Cite:Structure-Based Design of Potent and Selective 3-Phosphoinositide-Dependent Kinase-1 (PDK1) Inhibitors.
J.Med.Chem., 54, 2011
3QD0
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Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with (2R,5S)-1-[2-Amino-6-(3-amino-1H-indazol-6-yl)-4-pyrimidinyl]-6-methyl-N-phenyl-3-piperidinecarboxamide
Descriptor: (3S,6R)-1-[2-amino-6-(3-amino-2H-indazol-6-yl)pyrimidin-4-yl]-6-methyl-N-phenylpiperidine-3-carboxamide, 3-phosphoinositide-dependent protein kinase 1, GLYCEROL, ...
Authors:Medina, J.R, Becker, C.J, Blackledge, C.W, Duquenne, C, Feng, Y, Grant, S.W, Heerding, D, Li, W.H, Miller, W.H, Romeril, S.P, Scherzer, D, Shu, A, Bobko, M.A, Chadderton, A.R, Dumble, M, Gradiner, C.M, Gilbert, S, Liu, Q, Rabindran, S.K, Sudakin, V, Xiang, H, Brady, P.G, Campobasso, N, Ward, P, Axten, J.M.
Deposit date:2011-01-17
Release date:2011-03-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structure-Based Design of Potent and Selective 3-Phosphoinositide-Dependent Kinase-1 (PDK1) Inhibitors.
J.Med.Chem., 54, 2011
6K81
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BU of 6k81 by Molmil
Crystal structure of human VASH1-SVBP complex
Descriptor: Small vasohibin-binding protein, Tubulinyl-Tyr carboxypeptidase 1
Authors:Liu, X, Wang, H, Zhang, Y, Feng, Y.
Deposit date:2019-06-11
Release date:2020-02-19
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural insights into tubulin detyrosination by vasohibins-SVBP complex.
Cell Discov, 5, 2019
8HOO
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BU of 8hoo by Molmil
Crystal structure of the P450 BM3 heme domain mutant F87A in complex with Im-C6-Tyr-Nap
Descriptor: Bifunctional cytochrome P450/NADPH--P450 reductase, Im-C6-Tyr-Nap, PROTOPORPHYRIN IX CONTAINING FE
Authors:Jiang, Y, Dong, S, Feng, Y, Cong, Z.
Deposit date:2022-12-10
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structure of the P450 BM3 heme domain mutant F87A in complex with Im-C6-Tyr-Nap
To Be Published
8HOT
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BU of 8hot by Molmil
Crystal structure of the P450 BM3 heme domain mutant F87A in complex with NH2-C7-Phe-Phe
Descriptor: Bifunctional cytochrome P450/NADPH--P450 reductase, NH2-C7-Phe-Phe, PROTOPORPHYRIN IX CONTAINING FE
Authors:Jiang, Y, Dong, S, Feng, Y, Cong, Z.
Deposit date:2022-12-10
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal structure of the P450 BM3 heme domain mutant F87A in complex with NH2-C7-Phe-Phe
To Be Published
8I23
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BU of 8i23 by Molmil
Clostridium thermocellum RNA polymerase transcription open complex with SigI1 and its promoter
Descriptor: DNA (80-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Li, J, Zhang, H, Li, D, Feng, Y, Zhu, P.
Deposit date:2023-01-13
Release date:2023-10-11
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structure of the transcription open complex of distinct sigma I factors.
Nat Commun, 14, 2023
8I24
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BU of 8i24 by Molmil
Clostridium thermocellum RNA polymerase transcription open complex with SigI6 and its promoter
Descriptor: DNA (80-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Li, J, Zhang, H, Li, D, Feng, Y, Zhu, P.
Deposit date:2023-01-13
Release date:2023-10-11
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Structure of the transcription open complex of distinct sigma I factors.
Nat Commun, 14, 2023
7CGW
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BU of 7cgw by Molmil
Complex structure of PD-1 and tislelizumab Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of tislelizumab Fab, Light chain of tislelizumab Fab, ...
Authors:Hong, Y, Feng, Y.C, Liu, Y.
Deposit date:2020-07-02
Release date:2021-04-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Tislelizumab uniquely binds to the CC' loop of PD-1 with slow-dissociated rate and complete PD-L1 blockage.
Febs Open Bio, 11, 2021
6L87
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BU of 6l87 by Molmil
Solution structure of the tandem PWWP-ARID domains of human RBBP1
Descriptor: AT-rich interactive domain-containing protein 4A
Authors:Gong, W.B, Perrett, S, Feng, Y.G.
Deposit date:2019-11-05
Release date:2021-01-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural insight into chromatin recognition by multiple domains of the tumor suppressor RBBP1.
J.Mol.Biol., 2021
6IH3
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BU of 6ih3 by Molmil
Crystal structure of Phosphite Dehydrogenase from Ralstonia sp. 4506 in complex with non-natural cofactor Nicotinamide Cytosine Dinucleotide
Descriptor: Phosphite dehydrogenase, [[(2S,3S,4R,5S)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3S,4R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
Authors:Song, X, Feng, Y, Zhao, Z, Liu, Y.
Deposit date:2018-09-28
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.942 Å)
Cite:Structural Insights into Phosphite Dehydrogenase Variants Favoring a Non-natural Redox Cofactor
Acs Catalysis, 9, 2019
6IH8
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Crystal structure of Phosphite Dehydrogenase mutant I151R/P176R/M207A from Ralstonia sp. 4506
Descriptor: Phosphite dehydrogenase
Authors:Song, X, Feng, Y, Liu, Y, Zhao, Z.
Deposit date:2018-09-28
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Insights into Phosphite Dehydrogenase Variants Favoring a Non-natural Redox Cofactor
Acs Catalysis, 9, 2019
6IVU
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BU of 6ivu by Molmil
Solution structure of the Sigma-anti-sigma factor complex RsgI1N-SigI1C from Clostridium thermocellum
Descriptor: Anti-sigma-I factor RsgI1, RNA polymerase sigma factor SigI1
Authors:Wei, Z, Feng, Y.
Deposit date:2018-12-04
Release date:2019-05-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Alternative sigma I/anti-sigma I factors represent a unique form of bacterial sigma /anti-sigma complex.
Nucleic Acids Res., 47, 2019
6IVS
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Solution structure of the N-terminal domain of the anti-sigma factor RsgI1 from Clostridium thermocellum
Descriptor: Anti-sigma-I factor RsgI1
Authors:Wei, Z, Feng, Y.
Deposit date:2018-12-04
Release date:2019-05-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Alternative sigma I/anti-sigma I factors represent a unique form of bacterial sigma /anti-sigma complex.
Nucleic Acids Res., 47, 2019

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