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PDB: 58 results
5W7O
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BU of 5w7o by Molmil
2-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant
Descriptor: DNA (5'-D(*AP*TP*GP*(US3)P*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ...
Authors:Fang, Z, Yang, F, Huang, Z.
Deposit date:2017-06-20
Release date:2017-06-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:2-Se-T-modified-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant
To Be Published
5WJR
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BU of 5wjr by Molmil
High resolution native hexamer DNA and RNA hybrid in complex with RNase H catalytic domain D132N mutant
Descriptor: DNA (5'-D(*AP*TP*GP*TP*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ...
Authors:Fang, Z, Huang, Z.
Deposit date:2017-07-24
Release date:2017-08-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
6PTS
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BU of 6pts by Molmil
NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state A)
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, GTPase KRas, ...
Authors:Fang, Z, Lee, K, Gasmi-Seabrook, G, Ikura, M, Marshall, C.B.
Deposit date:2019-07-16
Release date:2020-05-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Multivalent assembly of KRAS with the RAS-binding and cysteine-rich domains of CRAF on the membrane.
Proc.Natl.Acad.Sci.USA, 117, 2020
6PTW
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BU of 6ptw by Molmil
NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state B)
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, GTPase KRas, ...
Authors:Fang, Z, Lee, K, Gasmi-Seabrook, G, Ikura, M, Marshall, C.B.
Deposit date:2019-07-16
Release date:2020-05-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Multivalent assembly of KRAS with the RAS-binding and cysteine-rich domains of CRAF on the membrane.
Proc.Natl.Acad.Sci.USA, 117, 2020
8FER
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BU of 8fer by Molmil
16mer self-complementary duplex RNA with two continuous s(2)U:s(2)U pairs
Descriptor: RNA 16mer with two continuous s(2)U
Authors:Fang, Z, Zhou, L, Szostak, J.W.
Deposit date:2022-12-06
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8FEO
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BU of 8feo by Molmil
16mer self-complementary duplex RNA with two separated native U:U pairs
Descriptor: MAGNESIUM ION, RNA 16mer, STRONTIUM ION
Authors:Fang, Z, Szostak, J.W.
Deposit date:2022-12-06
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8FEQ
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BU of 8feq by Molmil
16mer self-complementary duplex RNA with two separated s(2)U:s(2)U pairs
Descriptor: CALCIUM ION, RNA 16mer with two separated s(2)U
Authors:Fang, Z, Zhou, L, Szostak, J.W.
Deposit date:2022-12-06
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8FEP
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BU of 8fep by Molmil
16mer self-complementary duplex RNA with two continuous native U:U pairs
Descriptor: RNA 16mer
Authors:Fang, Z, Szostak, J.W.
Deposit date:2022-12-06
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8VAW
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BU of 8vaw by Molmil
Magnesium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomer
Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, Magnesium catalyzed nonenzymatic RNA primer extension product
Authors:Fang, Z, Szostak, J.W.
Deposit date:2023-12-11
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Catalytic Metal Ion-Substrate Coordination during Nonenzymatic RNA Primer Extension.
J.Am.Chem.Soc., 146, 2024
8VAX
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BU of 8vax by Molmil
Cadmium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomer
Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, Cadmium catalyzed nonenzymatic RNA primer extension product, MAGNESIUM ION
Authors:Fang, Z, Szostak, J.W.
Deposit date:2023-12-11
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.417 Å)
Cite:Catalytic Metal Ion-Substrate Coordination during Nonenzymatic RNA Primer Extension.
J.Am.Chem.Soc., 146, 2024
8SCJ
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BU of 8scj by Molmil
Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium time-resolved 2h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCL
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BU of 8scl by Molmil
Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium time-resolved 6h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCI
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BU of 8sci by Molmil
Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium time-resolved 1h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCG
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BU of 8scg by Molmil
Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium time-resolved 0h (Ground State)
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 3'-Amino DNA Primer, CALCIUM ION, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCM
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BU of 8scm by Molmil
Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium time-resolved 8h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCK
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BU of 8sck by Molmil
Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium time-resolved 4h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCO
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BU of 8sco by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 0h (Ground State)
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 3'-Amino DNA primer, CALCIUM ION, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCN
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BU of 8scn by Molmil
Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium time-resolved 24h (Product State)
Descriptor: CALCIUM ION, DIPHOSPHATE, DNA polymerase I, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCU
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BU of 8scu by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 48h (Product State)
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCP
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BU of 8scp by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 1h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCR
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BU of 8scr by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 4h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCQ
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BU of 8scq by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 2h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCS
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BU of 8scs by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 8h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
7KUO
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BU of 7kuo by Molmil
FANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(GFL))-3')
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2020-11-25
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.281 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUN
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BU of 7kun by Molmil
2'-F modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*(GF2))-3')
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2020-11-25
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021

 

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