Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 122 件

6CC9
DownloadVisualize
BU of 6cc9 by Molmil
NMR data-driven model of GTPase KRas-GMPPNP:Cmpd2 complex tethered to a nanodisc
分子名称: (2R,4S)-4-[(5-bromo-1H-indole-3-carbonyl)amino]-2-[(4-chlorophenyl)methyl]piperidin-1-ium, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, ...
著者Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M.
登録日2018-02-06
公開日2018-09-05
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site.
Cell Chem Biol, 25, 2018
6CCX
DownloadVisualize
BU of 6ccx by Molmil
NMR data-driven model of GTPase KRas-GMPPNP:Cmpd2 complex tethered to a nanodisc
分子名称: (2R,4S)-4-[(5-bromo-1H-indole-3-carbonyl)amino]-2-[(4-chlorophenyl)methyl]piperidin-1-ium, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, ...
著者Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M.
登録日2018-02-07
公開日2018-09-05
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site.
Cell Chem Biol, 25, 2018
6CCH
DownloadVisualize
BU of 6cch by Molmil
NMR data-driven model of GTPase KRas-GMPPNP tethered to a nanodisc (E3 state)
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, GTPase KRas, ...
著者Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M.
登録日2018-02-07
公開日2018-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site.
Cell Chem Biol, 25, 2018
7KUO
DownloadVisualize
BU of 7kuo by Molmil
FANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
分子名称: DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(GFL))-3')
著者Fang, Z, Giurgiu, C, Szostak, J.W.
登録日2020-11-25
公開日2021-09-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.281 Å)
主引用文献Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUN
DownloadVisualize
BU of 7kun by Molmil
2'-F modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
分子名称: DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*(GF2))-3')
著者Fang, Z, Giurgiu, C, Szostak, J.W.
登録日2020-11-25
公開日2021-09-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUK
DownloadVisualize
BU of 7kuk by Molmil
High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
分子名称: DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')
著者Fang, Z, Giurgiu, C, Szostak, J.W.
登録日2020-11-25
公開日2021-09-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUM
DownloadVisualize
BU of 7kum by Molmil
LNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
分子名称: 5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(LCG)-3', DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
著者Fang, Z, Giurgiu, C, Szostak, J.W.
登録日2020-11-25
公開日2021-09-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.714 Å)
主引用文献Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUL
DownloadVisualize
BU of 7kul by Molmil
DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
分子名称: DIGUANOSINE-5'-TRIPHOSPHATE, DNA/RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*G)-3'), MAGNESIUM ION
著者Fang, Z, Giurgiu, C, Szostak, J.W.
登録日2020-11-25
公開日2021-09-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUP
DownloadVisualize
BU of 7kup by Molmil
2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
分子名称: 5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(OMG))-3', DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
著者Fang, Z, Giurgiu, C, Szostak, J.W.
登録日2020-11-25
公開日2021-09-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7LNF
DownloadVisualize
BU of 7lnf by Molmil
3'-deoxy modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
分子名称: 3'-deoxy-guanosine 5'-monophosphate, 4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE, COBALT (II) ION, ...
著者Fang, Z, Giurgiu, C, Szostak, J.W.
登録日2021-02-07
公開日2021-09-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.652 Å)
主引用文献Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7LNG
DownloadVisualize
BU of 7lng by Molmil
TNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
分子名称: 2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one, 4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE, DIGUANOSINE-5'-TRIPHOSPHATE, ...
著者Fang, Z, Giurgiu, C, Szostak, J.W.
登録日2021-02-07
公開日2021-09-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7LNE
DownloadVisualize
BU of 7lne by Molmil
ANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
分子名称: 4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE, DIGUANOSINE-5'-TRIPHOSPHATE, GUANINE ARABINOSE-5'-PHOSPHATE, ...
著者Fang, Z, Giurgiu, C, Szostak, J.W.
登録日2021-02-07
公開日2021-09-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
3UT6
DownloadVisualize
BU of 3ut6 by Molmil
Crystal structure of E. Coli PNP complexed with PO4 and formycin A
分子名称: (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol, PHOSPHATE ION, Purine nucleoside phosphorylase deoD-type
著者Stefanic, Z.
登録日2011-11-25
公開日2012-05-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.895 Å)
主引用文献New phosphate binding sites in the crystal structure of Escherichia coli purine nucleoside phosphorylase complexed with phosphate and formycin A.
Febs Lett., 586, 2012
8FEO
DownloadVisualize
BU of 8feo by Molmil
16mer self-complementary duplex RNA with two separated native U:U pairs
分子名称: MAGNESIUM ION, RNA 16mer, STRONTIUM ION
著者Fang, Z, Szostak, J.W.
登録日2022-12-06
公開日2024-01-24
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8FEQ
DownloadVisualize
BU of 8feq by Molmil
16mer self-complementary duplex RNA with two separated s(2)U:s(2)U pairs
分子名称: CALCIUM ION, RNA 16mer with two separated s(2)U
著者Fang, Z, Zhou, L, Szostak, J.W.
登録日2022-12-06
公開日2024-01-24
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8FEP
DownloadVisualize
BU of 8fep by Molmil
16mer self-complementary duplex RNA with two continuous native U:U pairs
分子名称: RNA 16mer
著者Fang, Z, Szostak, J.W.
登録日2022-12-06
公開日2024-01-24
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8FER
DownloadVisualize
BU of 8fer by Molmil
16mer self-complementary duplex RNA with two continuous s(2)U:s(2)U pairs
分子名称: RNA 16mer with two continuous s(2)U
著者Fang, Z, Zhou, L, Szostak, J.W.
登録日2022-12-06
公開日2024-01-24
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8VAW
DownloadVisualize
BU of 8vaw by Molmil
Magnesium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomer
分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, Magnesium catalyzed nonenzymatic RNA primer extension product
著者Fang, Z, Szostak, J.W.
登録日2023-12-11
公開日2024-04-17
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Catalytic Metal Ion-Substrate Coordination during Nonenzymatic RNA Primer Extension.
J.Am.Chem.Soc., 146, 2024
8VAX
DownloadVisualize
BU of 8vax by Molmil
Cadmium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomer
分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, Cadmium catalyzed nonenzymatic RNA primer extension product, MAGNESIUM ION
著者Fang, Z, Szostak, J.W.
登録日2023-12-11
公開日2024-04-17
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.417 Å)
主引用文献Catalytic Metal Ion-Substrate Coordination during Nonenzymatic RNA Primer Extension.
J.Am.Chem.Soc., 146, 2024
1ETZ
DownloadVisualize
BU of 1etz by Molmil
THE THREE-DIMENSIONAL STRUCTURE OF AN ANTI-SWEETENER FAB, NC10.14, SHOWS THE EXTENT OF STRUCTURAL DIVERSITY IN ANTIGEN RECOGNITION BY IMMUNOGLOBULINS
分子名称: FAB NC10.14 - HEAVY CHAIN, FAB NC10.14 - LIGHT CHAIN, N-(P-CYANOPHENYL)-N'-DIPHENYLMETHYL-GUANIDINE-ACETIC ACID
著者Guddat, L.W, Shan, L, Broomell, C, Ramsland, P.A, Fan, Z, Anchin, J.M, Linthicum, D.S, Edmundson, A.B.
登録日2000-04-13
公開日2000-10-18
最終更新日2017-10-04
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The three-dimensional structure of a complex of a murine Fab (NC10. 14) with a potent sweetener (NC174): an illustration of structural diversity in antigen recognition by immunoglobulins.
J.Mol.Biol., 302, 2000
4GA7
DownloadVisualize
BU of 4ga7 by Molmil
Crystal structure of human serpinB1 mutant
分子名称: Leukocyte elastase inhibitor
著者Wang, L, Li, Q, Wu, L, Zhang, K, Tong, L, Sun, F, Fan, Z.
登録日2012-07-25
公開日2013-01-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Identification of SERPINB1 as a physiological inhibitor of human granzyme H
J.Immunol., 190, 2013
4GAW
DownloadVisualize
BU of 4gaw by Molmil
Crystal structure of active human granzyme H
分子名称: CHLORIDE ION, Granzyme H, SULFATE ION
著者Wang, L, Li, Q, Wu, L, Zhang, K, Tong, L, Sun, F, Fan, Z.
登録日2012-07-25
公開日2013-01-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Identification of SERPINB1 as a physiological inhibitor of human granzyme H
J.Immunol., 190, 2013
1AQK
DownloadVisualize
BU of 1aqk by Molmil
THREE-DIMENSIONAL STRUCTURE OF A HUMAN FAB WITH HIGH AFFINITY FOR TETANUS TOXOID
分子名称: FAB B7-15A2
著者Faber, C, Fan, Z, Edmundson, A.B.
登録日1997-07-30
公開日1998-02-04
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Three-dimensional structure of a human Fab with high affinity for tetanus toxoid.
Immunotechnology, 3, 1998
5EAZ
DownloadVisualize
BU of 5eaz by Molmil
crystal form I of YfiB belonging to space groups P21
分子名称: SULFATE ION, YfiB
著者Xu, M, Yang, X, Yang, X.-A, Zhou, L, Liu, T.-Z, Fan, Z, Jiang, T.
登録日2015-10-17
公開日2016-05-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.151 Å)
主引用文献Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system
Protein Cell, 7, 2016
3U82
DownloadVisualize
BU of 3u82 by Molmil
Binding of herpes simplex virus glycoprotein D to nectin-1 exploits host cell adhesion
分子名称: Envelope glycoprotein D, Poliovirus receptor-related protein 1
著者Zhang, N, Yan, J, Lu, G, Guo, Z, Fan, Z, Wang, J, Shi, Y, Qi, J, Gao, G.F.
登録日2011-10-15
公開日2012-03-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.164 Å)
主引用文献Binding of herpes simplex virus glycoprotein D to nectin-1 exploits host cell adhesion.
Nat Commun, 2, 2011

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon