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PDB: 249 results

1HO8
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CRYSTAL STRUCTURE OF THE REGULATORY SUBUNIT H OF THE V-TYPE ATPASE OF SACCHAROMYCES CEREVISIAE
Descriptor: SULFATE ION, VACUOLAR ATP SYNTHASE SUBUNIT H
Authors:Sagermann, M, Stevens, T.H, Matthews, B.W.
Deposit date:2000-12-10
Release date:2001-06-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal structure of the regulatory subunit H of the V-type ATPase of Saccharomyces cerevisiae.
Proc.Natl.Acad.Sci.USA, 98, 2001
8DAN
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BU of 8dan by Molmil
CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, E1 envelope glycoprotein, E2 envelope glycoprotein, ...
Authors:Zimmerman, M.I, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2022-06-13
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (4.74 Å)
Cite:Alternate domain repeat usage in an alphavirus entry receptor enables host species expansion
To Be Published
8DAQ
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CryoEM structure of Western equine encephalitis virus VLP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, E1 envelope glycoprotein, E2 envelope glycoprotein
Authors:Zimmerman, M.I, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2022-06-13
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (4.35 Å)
Cite:Alternate repeat domain usage in an alphavirus entry receptor enables host species expansion
To Be Published
262L
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BU of 262l by Molmil
STRUCTURAL CHARACTERISATION OF AN ENGINEERED TANDEM REPEAT CONTRASTS THE IMPORTANCE OF CONTEXT AND SEQUENCE IN PROTEIN FOLDING
Descriptor: LYSOZYME
Authors:Sagermann, M, Baase, W.A, Matthews, B.W.
Deposit date:1999-05-11
Release date:1999-05-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural characterization of an engineered tandem repeat contrasts the importance of context and sequence in protein folding.
Proc.Natl.Acad.Sci.USA, 96, 1999
8EWF
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BU of 8ewf by Molmil
CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Chimeric MXRA8 receptor: D1 from Duck MXRA8 and D2 from Mouse MXRA8, E1 envelope protein, ...
Authors:Zimmerman, M.I, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2022-10-22
Release date:2023-10-25
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.92 Å)
Cite:Alternate domain repeat usage in an alphavirus entry receptor enables host species expansion
To Be Published
6MRM
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BU of 6mrm by Molmil
Red Clover Necrotic Mosaic Virus
Descriptor: CALCIUM ION, Capsid protein
Authors:Sherman, M.B, Smith, T.J.
Deposit date:2018-10-14
Release date:2019-10-16
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Near-Atomic-Resolution Cryo-Electron Microscopy Structures of Cucumber Leaf Spot Virus and Red Clover Necrotic Mosaic Virus: Evolutionary Divergence at the Icosahedral Three-Fold Axes.
J.Virol., 94, 2020
6MRL
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BU of 6mrl by Molmil
Cucumber Leaf Spot Virus
Descriptor: CALCIUM ION, p41
Authors:Sherman, M.B, Smith, T.J.
Deposit date:2018-10-14
Release date:2019-10-16
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Near-Atomic-Resolution Cryo-Electron Microscopy Structures of Cucumber Leaf Spot Virus and Red Clover Necrotic Mosaic Virus: Evolutionary Divergence at the Icosahedral Three-Fold Axes.
J.Virol., 94, 2020
1C2Q
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BU of 1c2q by Molmil
SOLUTION STRUCTURE OF A DNA.RNA HYBRID CONTAINING AN ALPHAT-ANOMERIC THYMIDINE AND POLARITY REVERSALS
Descriptor: 5'-D(ATGG-3'-3'-(T3P)-5'-5'-GCTC)-3', 5'-R(GAGCACCAU)-3'
Authors:Germann, M.W, Aramini, J.M.
Deposit date:1999-07-26
Release date:1999-11-29
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a DNA.RNA hybrid containing an alpha-anomeric thymidine and polarity reversals: d(ATGG-3'-3'-alphaT-5'-5'-GCTC). r(gagcaccau).
Biochemistry, 38, 1999
3MPW
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Structure of EUTM in 2-D protein membrane
Descriptor: Ethanolamine utilization protein eutM, PHOSPHATE ION
Authors:Sagermann, M, Takenoya, M, Nikolakakis, K.
Deposit date:2010-04-27
Release date:2011-05-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystallographic insights into the pore structures and mechanisms of the EutL and EutM shell proteins of the ethanolamine-utilizing microcompartment of Escherichia coli.
J.Bacteriol., 192, 2010
3MPY
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Structure of EUTM in 2-D protein membrane
Descriptor: Ethanolamine utilization protein eutM, SULFATE ION
Authors:Sagermann, M, Takenoya, M, Nikolakakis, K.
Deposit date:2010-04-27
Release date:2010-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic insights into the pore structures and mechanisms of the EutL and EutM shell proteins of the ethanolamine-utilizing microcompartment of Escherichia coli.
J.Bacteriol., 192, 2010
3MPV
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Structure of EUTL in the zinc-induced open form
Descriptor: BETA-MERCAPTOETHANOL, Ethanolamine utilization protein eutL, ZINC ION
Authors:Sagermann, M, Takenoya, M, Nikolakakis, K.
Deposit date:2010-04-27
Release date:2010-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic insights into the pore structures and mechanisms of the EutL and EutM shell proteins of the ethanolamine-utilizing microcompartment of Escherichia coli.
J.Bacteriol., 192, 2010
1JTM
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Alternative Structures of a Sequence Extended T4 Lysozyme Show that the Highly Conserved Beta-Sheet has Weak Intrinsic Folding Propensity
Descriptor: BETA-MERCAPTOETHANOL, LYSOZYME
Authors:Sagermann, M, Matthews, B.W.
Deposit date:2001-08-21
Release date:2002-03-20
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of a T4-lysozyme Duplication-extension Mutant Demonstrate that the Highly Conserved beta-Sheet Region has Low Intrinsic Folding Propensity
J.Mol.Biol., 316, 2002
1JQU
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Are Carboxy Terminii of Helices Coded by the Local Sequence or by Tertiary Structure Contacts
Descriptor: Lysozyme
Authors:Sagermann, M, Martensson, L.-G, Baase, W.A, Matthews, B.W.
Deposit date:2001-08-08
Release date:2002-03-06
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A test of proposed rules for helix capping: Implications for protein design
Protein Sci., 11, 2002
1JTN
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BU of 1jtn by Molmil
Alternative Structures of a Sequence Extended T4 Lysozyme Show that the Highly Conserved Beta-Sheet Region has weak intrinsic Folding Propensity
Descriptor: LYSOZYME, SULFATE ION
Authors:Sagermann, M, Matthews, B.W.
Deposit date:2001-08-21
Release date:2002-03-20
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of a T4-lysozyme Duplication-extension Mutant Demonstrate that the Highly Conserved beta-Sheet Region has Low Intrinsic Folding Propensity
J.Mol.Biol., 316, 2002
2FFS
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BU of 2ffs by Molmil
Structure of PR10-allergen-like protein PA1206 from Pseudomonas aeruginosa PAO1
Descriptor: hypothetical protein PA1206
Authors:Zimmerman, M.D, Chruszcz, M, Cymborowski, M.T, Wang, S, Kirillova, O, Skarina, T, Onopriyenko, O, Savchenko, A, Edwards, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2005-12-20
Release date:2006-01-10
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of PR10-Allergen-Like Protein PA1206 From Pseudomonas aeruginosa PAO1
To be Published
2IAI
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BU of 2iai by Molmil
Crystal structure of SCO3833, a member of the TetR transcriptional regulator family from Streptomyces coelicolor A3
Descriptor: Putative transcriptional regulator SCO3833
Authors:Zimmerman, M.D, Xu, X, Wang, S, Gu, J, Chruszcz, M, Cymborowski, M, Savchenko, A, Edwards, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-09-08
Release date:2006-09-26
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of SCO3833, a member of the TetR transcriptional regulator family from Streptomyces coelicolor A3
To be Published
8SQN
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BU of 8sqn by Molmil
CryoEM structure of Western equine encephalitis virus VLP in complex with the chimeric Du-D1-Mo-D2 MXRA8 receptor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DuD1MoD2 chimeric MXRA8, E1 envelope glycoprotein, ...
Authors:Zimmerman, M.I, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2023-05-04
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (3.89 Å)
Cite:Vertebrate-class-specific binding modes of the alphavirus receptor MXRA8.
Cell, 186, 2023
2VM5
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HUMAN BIR2 DOMAIN OF BACULOVIRAL INHIBITOR OF APOPTOSIS REPEAT- CONTAINING 1 (BIRC1)
Descriptor: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 1, GLYCEROL, ZINC ION
Authors:Herman, M.D, Welin, M, Arrowsmith, C.H, Berglund, H, Busam, R.D, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Kallas, A, Karlberg, T, Kotenyova, T, Lehtio, L, Moche, M, Nilsson, M.E, Nyman, T, Persson, C, Sagemark, J, Svensson, L, Thorsell, A.G, Tresaugues, L, van den Berg, S, Weigelt, J, Nordlund, P, Structural Genomics Consortium (SGC)
Deposit date:2008-01-23
Release date:2008-01-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of Bir Domains from Human Naip and Ciap2.
Acta Crystallogr.,Sect.F, 65, 2009
2VM6
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BU of 2vm6 by Molmil
Human Bcl2-A1 in complex with Bim-BH3 peptide
Descriptor: BCL-2-LIKE PROTEIN 11, BCL-2-RELATED PROTEIN A1, SULFATE ION
Authors:Herman, M.D, Lehtio, L, Arrowsmith, C.H, Berglund, H, Busam, R.D, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Kallas, A, Karlberg, T, Kotenyova, T, Moche, M, Nilsson, M.E, Nyman, T, Persson, C, Sagemark, J, Svensson, L, Thorsell, A.G, Tresaugues, L, van den Berg, S, Weigelt, J, Welin, M, Nordlund, P, Structural Genomics Consortium (SGC)
Deposit date:2008-01-23
Release date:2008-02-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Completing the Family Portrait of the Anti- Apoptotic Bcl-2 Proteins: Crystal Structure of Human Bfl-1 in Complex with Bim.
FEBS Lett., 582, 2008
2B7X
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Sequential reorganization of beta-sheet topology by insertion of a single strand
Descriptor: Lysozyme, SULFATE ION
Authors:Sagermann, M, Matthews, B.W.
Deposit date:2005-10-05
Release date:2006-08-01
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Sequential reorganization of beta-sheet topology by insertion of a single strand.
Protein Sci., 15, 2006
1LLH
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BU of 1llh by Molmil
ARE CARBOXY TERMINII OF HELICES CODED BY THE LOCAL SEQUENCE OR BY TERTIARY STRUCTURE CONTACTS
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, Lysozyme
Authors:Sagermann, M, Martensson, L.-G, Baase, W.A, Matthews, B.W.
Deposit date:2002-04-28
Release date:2002-05-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A test of proposed rules for helix capping: Implications for protein design
Protein Sci., 11, 2002
1P56
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BU of 1p56 by Molmil
Duplication-extension of Helix A of T4 lysozyme
Descriptor: PROTEIN (Lysozyme)
Authors:Sagermann, M, Gay, L, Baase, W.A, Matthews, B.W.
Deposit date:2003-04-25
Release date:2004-05-04
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Relocation or duplication of the helix A sequence of T4 lysozyme causes only modest changes in structure but can increase or decrease the rate of folding.
Biochemistry, 43, 2004
1OYU
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Long-Distance conformational changes in a protein engineered by modulated sequence duplication
Descriptor: Lysozyme
Authors:Sagermann, M, Gay, L, Matthews, B.W.
Deposit date:2003-04-07
Release date:2003-07-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Long-distance conformational changes in a protein engineered by modulated sequence duplication
Proc.Natl.Acad.Sci.USA, 100, 2003
1YO7
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Re-engineering topology of the homodimeric ROP protein into a single-chain 4-helix bundle
Descriptor: Regulatory protein rop, ZINC ION
Authors:Sagermann, M, Emery, S.C, Sander, C.
Deposit date:2005-01-26
Release date:2005-02-15
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Re-engineering topology of the homodimeric ROP protein into a single-chain 4-helix bundle.
To be Published
1P5C
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Circular permutation of Helix A in T4 lysozyme
Descriptor: Lysozyme
Authors:Sagermann, M, Gay, L, Baase, W.A, Matthews, B.W.
Deposit date:2003-04-25
Release date:2004-05-04
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Relocation or duplication of the helix A sequence of T4 lysozyme causes only modest changes in structure but can increase or decrease the rate of folding.
Biochemistry, 43, 2004

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