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PDB: 110 results

6FRQ
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BU of 6frq by Molmil
Structure of tetragonal Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM Potassium sodium tartrate tetrahydrate.
Descriptor: CHLORIDE ION, Lysozyme C, TERBIUM(III) ION
Authors:Engilberge, S, Riobe, F, Di Pietro, S, Wagner, T, Shima, S, Girard, E, Dumont, E, Maury, O.
Deposit date:2018-02-16
Release date:2018-10-03
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Chemistry, 24, 2018
6FRM
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BU of 6frm by Molmil
Crystal Structure of coenzyme F420H2 oxidase (FprA) co-crystallized with 10 mM Tb-Xo4
Descriptor: CHLORIDE ION, Coenzyme F420H2 oxidase (FprA), FE (III) ION, ...
Authors:Engilberge, S, Riobe, F, Wagner, T, Di Pietro, S, Shima, S, Girard, E, Dumont, E, Maury, O.
Deposit date:2018-02-16
Release date:2018-10-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Chemistry, 24, 2018
6HK1
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BU of 6hk1 by Molmil
Crystal structure of the Thiazole synthase from Methanothermococcus thermolithotrophicus co-crystallized with Tb-Xo4
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, SODIUM ION, ...
Authors:Engilberge, S, Wagner, T, Santoni, G, Breyton, C, Shima, S, Franzetti, B, Riobe, F, Maury, O, Girard, E.
Deposit date:2018-09-05
Release date:2019-06-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Protein crystal structure determination with the crystallophore, a nucleating and phasing agent.
J.Appl.Crystallogr., 52, 2019
7BKR
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BU of 7bkr by Molmil
Endothiapepsin structure obtained at 298K and 40 mM DMSO from a dataset collected with JUNGFRAU detector
Descriptor: DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, Endothiapepsin, ...
Authors:Engilberge, S, Huang, C.-Y, Leonarski, F, Wojdyla, J.A, Marsh, M, Olieric, V, Wang, M.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Endothiapepsin structure obtained at 298K and 40 mM DMSO from a dataset collected with JUNGFRAU detector
To Be Published
7BKS
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BU of 7bks by Molmil
100K endothiapepsin structure obtained in presence of 40 mM DMSO
Descriptor: DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, Endothiapepsin, ...
Authors:Engilberge, S, Huang, C.-Y, Smith, K.M.L, Eris, D, Marsh, M, Wang, M, Wojdyla, J.A.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:100K endothiapepsin structure obtained in presence of 40 mM DMSO
To Be Published
7BKZ
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BU of 7bkz by Molmil
Endothiapepsin structure obtained at 298K after a soaking with fragment AC39729 from a dataset collected with JUNGFRAU detector
Descriptor: DIMETHYL SULFOXIDE, Endothiapepsin
Authors:Engilberge, S, Huang, C.-Y, Leonarski, F, Wojdyla, J.A, Marsh, M, Olieric, V, Wang, M.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Endothiapepsin structure obtained at 298K after a soaking with fragment AC39729 from a dataset collected with JUNGFRAU detector
To Be Published
7BKW
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BU of 7bkw by Molmil
Endothiapepsin structure obtained at 100K with fragment BTB09871 bound
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Engilberge, S, Huang, C.-Y, Smith, K.M.L, Eris, D, Marsh, M, Wang, M, Wojdyla, J.A.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Endothiapepsin structure obtained at 100K with fragment BTB09871 bound
To Be Published
7BKV
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BU of 7bkv by Molmil
Endothiapepsin structure obtained at 100K with fragment AC39729 bound
Descriptor: 5-fluoranylpyridin-2-amine, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Engilberge, S, Huang, C.-Y, Smith, K.M.L, Eris, D, Marsh, M, Wang, M, Wojdyla, J.A.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Endothiapepsin structure obtained at 100K with fragment AC39729 bound
To Be Published
7BKY
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BU of 7bky by Molmil
Endothiapepsin structure obtained at 298K with fragment BTB09871 bound from a dataset collected with JUNGFRAU detector
Descriptor: DIMETHYL SULFOXIDE, Endothiapepsin, PENTAETHYLENE GLYCOL, ...
Authors:Engilberge, S, Huang, C.-Y, Leonarski, F, Wojdyla, J.A, Marsh, M, Olieric, V, Wang, M.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Endothiapepsin structure obtained at 298K with fragment BTB09871 bound from a dataset collected with JUNGFRAU detector
To Be Published
7BKU
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BU of 7bku by Molmil
Endothiapepsin structure obtained at 100K with fragment JFD03909 bound
Descriptor: 1,10-PHENANTHROLINE, DIMETHYL SULFOXIDE, Endothiapepsin
Authors:Engilberge, S, Huang, C.-Y, Smith, K.M.L, Eris, D, Marsh, M, Wang, M, Wojdyla, J.A.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Endothiapepsin structure obtained at 100K with fragment JFD03909 bound
To Be Published
8A4E
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BU of 8a4e by Molmil
Room temperature structure of AtPhot2LOV2 in a photostationary equilibrium
Descriptor: 6-(3-TETRADECANOIC ACID) FLAVINE MONONUCLEOTIDE, FLAVIN MONONUCLEOTIDE, Phototropin-2
Authors:Engilberge, S, Caramello, N, Royant, A.
Deposit date:2022-06-10
Release date:2023-03-29
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Slow protein dynamics probed by time-resolved oscillation crystallography at room temperature.
Iucrj, 9, 2022
8A2W
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BU of 8a2w by Molmil
Room temperature structure of the ground state of AtPhot2LOV2 in space group P212121, as recovered 1620 seconds after light irradiation
Descriptor: FLAVIN MONONUCLEOTIDE, Phototropin-2
Authors:Engilberge, S, Caramello, N, Royant, A.
Deposit date:2022-06-06
Release date:2023-03-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Slow protein dynamics probed by time-resolved oscillation crystallography at room temperature.
Iucrj, 9, 2022
8A2V
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BU of 8a2v by Molmil
Room temperature structure of the ground state of AtPhot2LOV2 in space group P43212
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FLAVIN MONONUCLEOTIDE, Phototropin-2
Authors:Engilberge, S, Caramello, N, Royant, A.
Deposit date:2022-06-06
Release date:2023-03-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Slow protein dynamics probed by time-resolved oscillation crystallography at room temperature.
Iucrj, 9, 2022
6EQO
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BU of 6eqo by Molmil
Tri-functional propionyl-CoA synthase of Erythrobacter sp. NAP1 with bound NADP+ and phosphomethylphosphonic acid adenylate ester
Descriptor: Acetyl-coenzyme A synthetase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Authors:Zarzycki, J, Bernhardsgruetter, I, Voegeli, B, Wagner, T, Engilberge, S, Girard, E, Shima, S, Erb, T.J.
Deposit date:2017-10-13
Release date:2018-10-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The multicatalytic compartment of propionyl-CoA synthase sequesters a toxic metabolite.
Nat. Chem. Biol., 14, 2018
8KCM
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BU of 8kcm by Molmil
MmCPDII-DNA complex containing low-dosage, light induced repaired DNA.
Descriptor: Deoxyribodipyrimidine photo-lyase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Maestre-Reyna, M, Wang, P.-H, Nango, E, Hosokawa, Y, Saft, M, Furrer, A, Yang, C.-H, Ngura Putu, E.P.G, Wu, W.-J, Emmerich, H.-J, Engilberge, S, Caramello, N, Wranik, M, Glover, H.L, Franz-Badur, S, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Liao, J.-H, Weng, J.-H, Gad, W, Chang, C.-W, Pang, A.H, Gashi, D, Beale, E, Ozerov, D, Milne, C, Cirelli, C, Bacellar, C, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Spadaccini, R, Royant, A, Yamamoto, J, Iwata, S, Standfuss, J, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2023-08-08
Release date:2023-11-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Visualizing the DNA repair process by a photolyase at atomic resolution.
Science, 382, 2023
4KII
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BU of 4kii by Molmil
Beta-lactoglobulin in complex with Cp*Rh(III)Cl N,N-di(pyridin-2-yl)dodecanamide
Descriptor: Beta-lactoglobulin, [N,N-di(pyridin-2-yl-kappaN)dodecanamide]rhodium
Authors:Cherrier, M.V, Amara, P, Engilberge, S, Fontecilla-Camps, J.C.
Deposit date:2013-05-02
Release date:2013-09-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Basis for Enantioselectivity in the Transfer Hydrogenation of a Ketone Catalyzed by an Artificial Metalloenzyme
Eur.J.Inorg.Chem., 21, 2013
6Q3T
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BU of 6q3t by Molmil
Structure of Protease1 from Pyrococcus horikoshii at room temperature in ChipX microfluidic device
Descriptor: Deglycase PH1704
Authors:de Wijn, R, Engilberge, S, Olieric, V, Girard, E, Sauter, C.
Deposit date:2018-12-04
Release date:2019-05-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A simple and versatile microfluidic device for efficient biomacromolecule crystallization and structural analysis by serial crystallography.
Iucrj, 6, 2019
5NGJ
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BU of 5ngj by Molmil
Crystal structure of pb6, major tail tube protein of bacteriophage T5
Descriptor: CHLORIDE ION, Tail tube protein
Authors:Arnaud, C.-A, Effantin, G, Vives, C, Engilberge, S, Bacia, M, Boulanger, P, Girard, E, Schoehn, G, Breyton, C.
Deposit date:2017-03-17
Release date:2018-01-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bacteriophage T5 tail tube structure suggests a trigger mechanism for Siphoviridae DNA ejection.
Nat Commun, 8, 2017
5LDA
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BU of 5lda by Molmil
Structure of deubiquitinating enzyme homolog (Pyrococcus furiosus JAMM1) in complex with ubiquitin-like SAMP2.
Descriptor: GLYCEROL, JAMM1, SAMP2, ...
Authors:Cao, S, Engilberge, S, Girard, E, Gabel, F, Franzetti, B, Maupin-Furlow, J.A.
Deposit date:2016-06-24
Release date:2017-06-21
Last modified:2022-03-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Insight into Ubiquitin-Like Protein Recognition and Oligomeric States of JAMM/MPN(+) Proteases.
Structure, 25, 2017
5LD9
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BU of 5ld9 by Molmil
Structure of deubiquitinating enzyme homolog, Pyrococcus furiosus JAMM1.
Descriptor: CHLORIDE ION, JAMM1, ZINC ION
Authors:Maupin-Furlow, J.A, Franzetti, B, Cao, S, Girard, E, Gabel, F, Engilberge, S.
Deposit date:2016-06-24
Release date:2017-05-17
Last modified:2022-03-30
Method:X-RAY DIFFRACTION (1.733 Å)
Cite:Structural Insight into Ubiquitin-Like Protein Recognition and Oligomeric States of JAMM/MPN(+) Proteases.
Structure, 25, 2017
8B2Y
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BU of 8b2y by Molmil
Structure of the weakly red fluorescent protein csiFP4 from Clytia simplex
Descriptor: CHLORIDE ION, CsiFP4 chain A, SULFATE ION
Authors:Depernet, H, Engilberge, S, Lambert, G, Gotthard, G, Shaner, N, Royant, A.
Deposit date:2022-09-15
Release date:2023-09-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Structure of the weakly red fluorescent protein csiFP4 from Clytia simplex
To Be Published
7P2H
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BU of 7p2h by Molmil
Dimethylated fusion protein of RSL and mussel adhesion peptide (Mefp) in complex with cucurbit[7]uril, H3 sheet assembly
Descriptor: Fucose-binding lectin protein, GLYCEROL, SODIUM ION, ...
Authors:Ramberg, K, Engilberge, S, Crowley, P.B.
Deposit date:2021-07-06
Release date:2021-09-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Segregated Protein-Cucurbit[7]uril Crystalline Architectures via Modulatory Peptide Tectons.
Chemistry, 27, 2021
7P2J
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BU of 7p2j by Molmil
Dimethylated fusion protein of RSL and trimeric coiled coil (4dzn) in complex with cucurbit[7]uril, H3 sheet assembly
Descriptor: Fucose-binding lectin protein, SODIUM ION, beta-D-mannopyranose, ...
Authors:Ramberg, K, Engilberge, S, Crowley, P.B.
Deposit date:2021-07-06
Release date:2021-09-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Segregated Protein-Cucurbit[7]uril Crystalline Architectures via Modulatory Peptide Tectons.
Chemistry, 27, 2021
6Z5Q
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BU of 6z5q by Molmil
The RSL - sulfonato-calix[8]arene complex, P3 form, acetate pH 4.0
Descriptor: Fucose-binding lectin protein, GLYCEROL, beta-D-fructopyranose, ...
Authors:Ramberg, K, Engilberge, S, Crowley, P.B.
Deposit date:2020-05-27
Release date:2021-04-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Facile Fabrication of Protein-Macrocycle Frameworks.
J.Am.Chem.Soc., 143, 2021
6Z5M
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BU of 6z5m by Molmil
The RSL - sulfonato-calix[8]arene complex, I23 form, Gly-HCl pH 2.2
Descriptor: Fucose-binding lectin protein, GLYCEROL, beta-D-fructopyranose, ...
Authors:Ramberg, K, Engilberge, S, Crowley, P.B.
Deposit date:2020-05-26
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Facile Fabrication of Protein-Macrocycle Frameworks.
J.Am.Chem.Soc., 143, 2021

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