Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 148 件

8KD6
DownloadVisualize
BU of 8kd6 by Molmil
Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class3
分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ...
著者Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J.
登録日2023-08-09
公開日2023-09-13
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.07 Å)
主引用文献Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
Cell Res., 33, 2023
8KD5
DownloadVisualize
BU of 8kd5 by Molmil
Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class2
分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ...
著者Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Chang, X, Chao, W.C.H, He, J.
登録日2023-08-09
公開日2023-09-13
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
Cell Res., 33, 2023
8KD4
DownloadVisualize
BU of 8kd4 by Molmil
Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class1
分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ...
著者Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J.
登録日2023-08-09
公開日2023-09-13
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
Cell Res., 33, 2023
8KD2
DownloadVisualize
BU of 8kd2 by Molmil
Rpd3S in complex with 187bp nucleosome
分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ...
著者Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J.
登録日2023-08-09
公開日2023-09-13
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.02 Å)
主引用文献Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
Cell Res., 33, 2023
8KD7
DownloadVisualize
BU of 8kd7 by Molmil
Rpd3S in complex with nucleosome with H3K36MLA modification and 167bp DNA
分子名称: 167bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ...
著者Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Chang, X, Chao, W.C.H, He, J.
登録日2023-08-09
公開日2023-09-13
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.09 Å)
主引用文献Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
Cell Res., 33, 2023
6D6A
DownloadVisualize
BU of 6d6a by Molmil
The structure of ligand binding domain of LasR in complex with TP-1 homolog, compound 10
分子名称: 2,4-dibromo-6-{[(2-nitrobenzene-1-carbonyl)amino]methyl}phenyl benzoate, Transcriptional activator protein LasR
著者Dong, S.H, Nair, S.K.
登録日2018-04-20
公開日2018-08-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop "Out" Conformation for LasR.
Cell Chem Biol, 25, 2018
6LUS
DownloadVisualize
BU of 6lus by Molmil
Crystal structure of the Mengla Virus VP30 C-terminal domain
分子名称: Minor nucleoprotein VP30
著者Dong, S.S, Wen, K.N, Chu, H.G, Wang, C.H, Qin, X.C.
登録日2020-01-30
公開日2020-12-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of the Mengla virus VP30 C-terminal domain.
Biochem.Biophys.Res.Commun., 525, 2020
8KD3
DownloadVisualize
BU of 8kd3 by Molmil
Rpd3S in complex with nucleosome with H3K36MLA modification, H3K9Q mutation and 187bp DNA
分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ...
著者Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J.
登録日2023-08-09
公開日2023-09-13
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
Cell Res., 33, 2023
8KC7
DownloadVisualize
BU of 8kc7 by Molmil
Rpd3S histone deacetylase complex
分子名称: Chromatin modification-related protein EAF3, Histone deacetylase RPD3, Transcriptional regulatory protein RCO1, ...
著者Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J.
登録日2023-08-06
公開日2023-09-13
最終更新日2023-10-18
実験手法ELECTRON MICROSCOPY (3.46 Å)
主引用文献Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
Cell Res., 33, 2023
5UY9
DownloadVisualize
BU of 5uy9 by Molmil
Prolyl isomerase Pin1 R14A mutant bound with Brd4 peptide
分子名称: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Brd4 peptide, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, ...
著者Dong, S.-H, Nair, S.
登録日2017-02-23
公開日2017-04-26
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Prolyl isomerase PIN1 regulates the stability, transcriptional activity and oncogenic potential of BRD4.
Oncogene, 36, 2017
4ZOQ
DownloadVisualize
BU of 4zoq by Molmil
Crystal Structure of a Lanthipeptide Protease
分子名称: Intracellular serine protease
著者Dong, S.H, Nair, S.K.
登録日2015-05-06
公開日2016-03-23
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Applications of the class II lanthipeptide protease LicP for sequence-specific, traceless peptide bond cleavage.
Chem Sci, 6, 2015
6CIB
DownloadVisualize
BU of 6cib by Molmil
The structure of YcaO from Methanopyrus kandleri bound with AMPPCP and Mg2+
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, OXAMIC ACID, ...
著者Dong, S.-H, Nair, S.K.
登録日2018-02-23
公開日2018-03-21
最終更新日2018-03-28
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Enzymatic reconstitution of ribosomal peptide backbone thioamidation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6CI7
DownloadVisualize
BU of 6ci7 by Molmil
The structure of YcaO from Methanopyrus kandleri bound with AMPPCP and Mg2+
分子名称: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, YcaO
著者Dong, S.-H, Nair, S.K.
登録日2018-02-23
公開日2018-03-21
最終更新日2018-03-28
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Enzymatic reconstitution of ribosomal peptide backbone thioamidation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8WBS
DownloadVisualize
BU of 8wbs by Molmil
Crystal structure of cis-Epoxysuccinate Hydrolases KlCESH[L]-D48N complexed with sulfate ions
分子名称: (S)-2-haloacid dehalogenase, CALCIUM ION, SULFATE ION
著者Dong, S, Xuan, J.S, Feng, Y.G, Cui, Q.
登録日2023-09-10
公開日2024-01-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Deciphering the stereo-specific catalytic mechanisms of cis-epoxysuccinate hydrolases producing L(+)-tartaric acid.
J.Biol.Chem., 300, 2024
8WBT
DownloadVisualize
BU of 8wbt by Molmil
Crystal structure of cis-Epoxysuccinate Hydrolases KlCESH[L] mutant D48N complexed with L-TA
分子名称: (S)-2-haloacid dehalogenase, CALCIUM ION, GLYCEROL, ...
著者Dong, S, Xuan, J.S, Feng, Y.G, Cui, Q.
登録日2023-09-10
公開日2024-01-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Deciphering the stereo-specific catalytic mechanisms of cis-epoxysuccinate hydrolases producing L(+)-tartaric acid.
J.Biol.Chem., 300, 2024
8WBR
DownloadVisualize
BU of 8wbr by Molmil
Crystal structure of cis-Epoxysuccinate Hydrolases KlCESH[L]
分子名称: (S)-2-haloacid dehalogenase, CALCIUM ION
著者Dong, S, Xuan, J.S, Feng, Y.G, Cui, Q.
登録日2023-09-10
公開日2024-01-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Deciphering the stereo-specific catalytic mechanisms of cis-epoxysuccinate hydrolases producing L(+)-tartaric acid.
J.Biol.Chem., 300, 2024
8WBO
DownloadVisualize
BU of 8wbo by Molmil
Crystal structure of cis-Epoxysuccinate Hydrolases RhCESH[L] mutant D18N complexed with sulfate ions
分子名称: Epoxide hydrolase, SULFATE ION
著者Dong, S, Xuan, J.S, Feng, Y.G, Cui, Q.
登録日2023-09-10
公開日2024-01-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Deciphering the stereo-specific catalytic mechanisms of cis-epoxysuccinate hydrolases producing L(+)-tartaric acid.
J.Biol.Chem., 300, 2024
8WBK
DownloadVisualize
BU of 8wbk by Molmil
Crystal structure of cis-Epoxysuccinate Hydrolases RhCESH[L]
分子名称: Epoxide hydrolase, SULFATE ION
著者Dong, S, Xuan, J.S, Feng, Y.G, Cui, Q.
登録日2023-09-10
公開日2024-01-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Deciphering the stereo-specific catalytic mechanisms of cis-epoxysuccinate hydrolases producing L(+)-tartaric acid.
J.Biol.Chem., 300, 2024
8WBN
DownloadVisualize
BU of 8wbn by Molmil
Crystal structure of cis-Epoxysuccinate Hydrolases RhCESH[L] mutant D193N
分子名称: Epoxide hydrolase, SULFATE ION
著者Dong, S, Xuan, J.S, Feng, Y.G, Cui, Q.
登録日2023-09-10
公開日2024-01-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Deciphering the stereo-specific catalytic mechanisms of cis-epoxysuccinate hydrolases producing L(+)-tartaric acid.
J.Biol.Chem., 300, 2024
8WBM
DownloadVisualize
BU of 8wbm by Molmil
Crystal structure of cis-Epoxysuccinate Hydrolases RhCESH[L] mutant D193A complexed with sulfate ions
分子名称: Epoxide hydrolase, SULFATE ION
著者Dong, S, Xuan, J.S, Feng, Y.G, Cui, Q.
登録日2023-09-10
公開日2024-01-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献Deciphering the stereo-specific catalytic mechanisms of cis-epoxysuccinate hydrolases producing L(+)-tartaric acid.
J.Biol.Chem., 300, 2024
8WBL
DownloadVisualize
BU of 8wbl by Molmil
Crystal structure of cis-Epoxysuccinate Hydrolases RhCESH[L] complexed with sulfate ions
分子名称: Epoxide hydrolase, SULFATE ION
著者Dong, S, Xuan, J.S, Feng, Y.G, Cui, Q.
登録日2023-09-10
公開日2024-01-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.941 Å)
主引用文献Deciphering the stereo-specific catalytic mechanisms of cis-epoxysuccinate hydrolases producing L(+)-tartaric acid.
J.Biol.Chem., 300, 2024
8WBQ
DownloadVisualize
BU of 8wbq by Molmil
Crystal structure of cis-Epoxysuccinate Hydrolases RhCESH[L] mutant E212Q complexed with L-TA.
分子名称: Epoxide hydrolase, L(+)-TARTARIC ACID
著者Dong, S, Xuan, J.S, Feng, Y.G, Cui, Q.
登録日2023-09-10
公開日2024-01-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Deciphering the stereo-specific catalytic mechanisms of cis-epoxysuccinate hydrolases producing L(+)-tartaric acid.
J.Biol.Chem., 300, 2024
8WBP
DownloadVisualize
BU of 8wbp by Molmil
Crystal structure of cis-Epoxysuccinate Hydrolases RhCESH[L] mutant E212Q
分子名称: Epoxide hydrolase
著者Dong, S, Xuan, J.S, Feng, Y.G, Cui, Q.
登録日2023-09-10
公開日2024-01-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Deciphering the stereo-specific catalytic mechanisms of cis-epoxysuccinate hydrolases producing L(+)-tartaric acid.
J.Biol.Chem., 300, 2024
7YDL
DownloadVisualize
BU of 7ydl by Molmil
Crystal structure of the P450 BM3 heme domain mutant F87A/T268I/A184V/A82T in complex with N-imidazolyl-hexanoyl-L-phenylalanine
分子名称: (2S)-2-(6-imidazol-1-ylhexanoylamino)-3-phenyl-propanoic acid, Bifunctional cytochrome P450/NADPH--P450 reductase, PROTOPORPHYRIN IX CONTAINING FE
著者Dong, S, Chen, J, Jiang, Y, Cong, Z, Feng, Y.
登録日2022-07-04
公開日2023-07-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Crystal structure of the P450 BM3 heme domain mutant F87A/T268I/A184V/A82T in complex with N-imidazolyl-hexanoyl-L-phenylalanine
To Be Published
6D6D
DownloadVisualize
BU of 6d6d by Molmil
The structure of ligand binding domain of LasR in complex with TP-1 homolog, compound 13
分子名称: 2,4-dibromo-6-{[(2-nitrobenzene-1-carbonyl)amino]methyl}phenyl 2-cyanobenzoate, Transcriptional activator protein LasR
著者Dong, S.H, Nair, S.K.
登録日2018-04-20
公開日2018-08-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop "Out" Conformation for LasR.
Cell Chem Biol, 25, 2018

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon