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PDB: 163 件
7L7E
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BU of 7l7e by Molmil
Crystal structure of SARS-CoV-2 spike RBD in complex with human monoclonal antibodies AZD8895 and AZD1061
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHATE ION, Spike protein S1, ...
著者Dong, J, Crowe, J.E.
登録日2020-12-28
公開日2021-09-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Genetic and structural basis for SARS-CoV-2 variant neutralization by a two-antibody cocktail.
Nat Microbiol, 6, 2021
3HGL
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BU of 3hgl by Molmil
crystal of AvrPtoB 121-205
分子名称: Effector protein hopAB2
著者Dong, J, Xiao, F, Fan, F, Gu, L, Cang, H, Martin, G.B, Chai, J.
登録日2009-05-14
公開日2009-06-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of the Complex between Pseudomonas Effector AvrPtoB and the Tomato Pto Kinase Reveals Both a Shared and a Unique Interface Compared with AvrPto-Pto
Plant Cell, 21, 2009
6UIG
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BU of 6uig by Molmil
Crystal structure of human monoclonal antibody H7.200 in complex with H7N9 hemagglutinin HA1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, H7.200 Fab heavy chain, H7.200 Fab light chain, ...
著者Dong, J, Crowe, J.E.
登録日2019-09-30
公開日2020-10-07
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Anti-influenza H7 human antibody targets antigenic site in hemagglutinin head domain interface.
J.Clin.Invest., 130, 2020
5JRP
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BU of 5jrp by Molmil
crystal structure of monoclonal antibody MR78 Fab
分子名称: SODIUM ION, marberg virus monoclonal antibody MR78 Fab heavy chain, marberg virus monoclonal antibody MR78 Fab light chain
著者Dong, J, Crowe, J.
登録日2016-05-06
公開日2017-11-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Role of Non-local Interactions between CDR Loops in Binding Affinity of MR78 Antibody to Marburg Virus Glycoprotein.
Structure, 25, 2017
6VY4
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BU of 6vy4 by Molmil
Crystal structure of Hendra receptor binding protein head domain in complex with human neutralizing antibody HENV-32
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Anti-Hendra receptor binding protein antibody HENV-32 Fab heavy chain, Anti-Hendra receptor binding protein antibody HENV-32 Fab light chain, ...
著者Dong, J, Crowe, J.E.
登録日2020-02-25
公開日2020-12-30
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Potent Henipavirus Neutralization by Antibodies Recognizing Diverse Sites on Hendra and Nipah Virus Receptor Binding Protein.
Cell, 183, 2020
3HGK
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BU of 3hgk by Molmil
crystal structure of effect protein AvrptoB complexed with kinase Pto
分子名称: Effector protein hopAB2, Protein kinase
著者Dong, J, Fan, F, Gu, L, Chai, J.
登録日2009-05-14
公開日2009-06-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystal Structure of the Complex between Pseudomonas Effector AvrPtoB and the Tomato Pto Kinase Reveals Both a Shared and a Unique Interface Compared with AvrPto-Pto
Plant Cell, 21, 2009
7X8H
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BU of 7x8h by Molmil
Crystal structure of AtHPPD-(+)-Usnic acid complex
分子名称: (9bR)-2,6-diethanoyl-8,9b-dimethyl-3,7,9-tris(oxidanyl)dibenzofuran-1-one, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
著者Dong, J, Lin, H.-Y, Yang, G.-F.
登録日2022-03-13
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.986 Å)
主引用文献Discovery of Subnanomolar Inhibitors of 4-Hydroxyphenylpyruvate Dioxygenase via Structure-Based Rational Design.
J.Agric.Food Chem., 71, 2023
7X8E
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BU of 7x8e by Molmil
Crystal structure of PfHPPD-Y13287 complex
分子名称: 1,5-dimethyl-3-(2-methylphenyl)-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
著者Dong, J, Lin, H.-Y, Yang, G.-F.
登録日2022-03-12
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.749 Å)
主引用文献Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules
Adv Agrochem, 2022
7X8D
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BU of 7x8d by Molmil
Crystal structure of AtHPPD-phenylpyruvate complex
分子名称: 3-PHENYLPYRUVIC ACID, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
著者Dong, J, Lin, H.-Y, Yang, G.-F.
登録日2022-03-12
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.695 Å)
主引用文献Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules
Adv Agrochem, 2022
7X8I
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Crystal structure of AtHPPD-Shikonin complex
分子名称: 2-[(1R)-4-methyl-1-oxidanyl-pent-3-enyl]-5,8-bis(oxidanyl)naphthalene-1,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
著者Dong, J, Lin, H.-Y, Yang, G.-F.
登録日2022-03-13
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.096 Å)
主引用文献Discovery of Subnanomolar Inhibitors of 4-Hydroxyphenylpyruvate Dioxygenase via Structure-Based Rational Design.
J.Agric.Food Chem., 71, 2023
5H85
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BU of 5h85 by Molmil
Crystal structure of the bromodomain of human CREBBP in complex with UO37D
分子名称: CREB-binding protein, methyl 3-(7~{H}-purin-6-ylcarbamoyl)benzoate
著者Dong, J, Caflisch, A.
登録日2015-12-23
公開日2017-01-11
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.701 Å)
主引用文献Binding Motifs in the CBP Bromodomain: An Analysis of 20 Crystal Structures of Complexes with Small Molecules.
ACS Med Chem Lett, 9, 2018
6DLA
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BU of 6dla by Molmil
Crystal structures of an influenza A hemagglutinin antibody Fab CH65:7969d2
分子名称: CH65:7969d2 Fab heavy chain, CH65:7969d2 Fab light chain, SULFATE ION
著者Dong, J, Crowe, J.E, Finn, J.A.
登録日2018-05-31
公開日2019-06-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.004 Å)
主引用文献Identification of Structurally Related Antibodies in Antibody Sequence Databases Using Rosetta-Derived Position-Specific Scoring.
Structure, 28, 2020
6DL8
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BU of 6dl8 by Molmil
Crystal Structure of an influenza A hemagglutinin antibody Fab variant CH67:1203d4 chimera
分子名称: CH67:1203d4 FAB light chain, Ch67:1203d4 FAB heavy chain
著者Dong, J, Finn, J.A, Crowe, J.E.
登録日2018-05-31
公開日2019-06-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.805 Å)
主引用文献Identification of Structurally Related Antibodies in Antibody Sequence Databases Using Rosetta-Derived Position-Specific Scoring.
Structure, 28, 2020
6DLB
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BU of 6dlb by Molmil
Crystal Structure of an influenza A hemagglutinin antibody Fab CH65:1203d4 chimera
分子名称: CH65:1203d4 Fab heavy chain, CH65:1203d4 Fab light chain, SULFATE ION
著者Dong, J, Finn, J.A, Crowe, J.E.
登録日2018-05-31
公開日2019-06-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Identification of Structurally Related Antibodies in Antibody Sequence Databases Using Rosetta-Derived Position-Specific Scoring.
Structure, 28, 2020
5HCL
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BU of 5hcl by Molmil
Crystal Structure of the first bromodomain of BRD4 in complex with DMA
分子名称: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, ~{N},~{N}-dimethylethanamide
著者Dong, J, Weber, F.E, Caflisch, A.
登録日2016-01-04
公開日2017-01-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献N,N Dimethylacetamide a drug excipient that acts as bromodomain ligand for osteoporosis treatment.
Sci Rep, 7, 2017
3HTH
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BU of 3hth by Molmil
Crystal structure of multidrug binding protein EbrR complexed with proflavin
分子名称: EbrA repressor, NICKEL (II) ION, PROFLAVIN
著者Dong, J, Ni, L, Schumacher, M, Brennan, R.
登録日2009-06-11
公開日2010-07-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural plasticity is key to multiple ligand binding by the multidrug binding regulator EbrR
To be Published
3HTJ
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BU of 3htj by Molmil
Crystal structure of multidrug binding protein EbrR complexed with ethidium
分子名称: ETHIDIUM, EbrA repressor, NICKEL (II) ION
著者Dong, J, Ni, L, Schumacher, M, Brennan, R.
登録日2009-06-11
公開日2010-07-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural plasticity is key to multiple ligand binding by the multidrug binding regulator EbrR
To be Published
3HTA
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BU of 3hta by Molmil
Crystal structure of multidrug binding protein EbrR complexed with imidazole
分子名称: EbrA repressor, IMIDAZOLE
著者Dong, J, Ni, L, Schumacher, M, Brennan, R.
登録日2009-06-11
公開日2010-07-14
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural plasticity is key to multiple ligand binding by the multidrug binding regulator EbrR
To be Published
3HTI
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BU of 3hti by Molmil
Crystal structure of multidrug binding protein EbrR complexed with malachite green
分子名称: EbrA repressor, MALACHITE GREEN
著者Dong, J, Ni, L, Schumacher, M, Brennan, R.
登録日2009-06-11
公開日2010-07-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural plasticity is key to multiple ligand binding by the multidrug binding regulator EbrR
To be Published
6E9I
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BU of 6e9i by Molmil
The crystal structure of bovine ultralong antibody BOV-4
分子名称: Bovine ultralong antibody BOV-4 heavy chain, Bovine ultralong antibody BOV-4 light chain
著者Dong, J, Crowe, J.E.
登録日2018-08-01
公開日2019-05-01
最終更新日2019-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Diversity of Ultralong CDRH3s in Seven Bovine Antibody Heavy Chains.
Front Immunol, 10, 2019
6E9G
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BU of 6e9g by Molmil
The crystal structure of bovine ultralong antibody BOV-2
分子名称: Bovine ultralong antibody BOV-2 heavy chain, Bovine ultralong antibody BOV-2 light chain
著者Dong, J, Crowe, J.E.
登録日2018-08-01
公開日2019-05-01
実験手法X-RAY DIFFRACTION (2.904 Å)
主引用文献Structural Diversity of Ultralong CDRH3s in Seven Bovine Antibody Heavy Chains.
Front Immunol, 10, 2019
6E9U
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BU of 6e9u by Molmil
The crystal structure of bovine ultralong antibody BOV-7
分子名称: Bovine ultralong antibody BOV-7 heavy chain, Bovine ultralong antibody BOV-7 light chain
著者Dong, J, Crowe, J.E.
登録日2018-08-01
公開日2019-05-01
実験手法X-RAY DIFFRACTION (2.295 Å)
主引用文献Structural Diversity of Ultralong CDRH3s in Seven Bovine Antibody Heavy Chains.
Front Immunol, 10, 2019
6E9K
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BU of 6e9k by Molmil
The crystal structure of bovine ultralong antibody BOV-5
分子名称: Bovine ultralong antibody BOV-5 heavy chain, IGL@ protein
著者Dong, J, Crowe, J.E.
登録日2018-08-01
公開日2019-05-01
実験手法X-RAY DIFFRACTION (2.193 Å)
主引用文献Structural Diversity of Ultralong CDRH3s in Seven Bovine Antibody Heavy Chains.
Front Immunol, 10, 2019
6E9Q
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BU of 6e9q by Molmil
The crystal structure of bovine ultralong antibody BOV-6
分子名称: Bovine ultralong antibody BOV-6 heavy chain, Bovine ultralong antibody BOV-6 light chain
著者Dong, J, Crowe, J.E.
登録日2018-08-01
公開日2019-05-01
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural Diversity of Ultralong CDRH3s in Seven Bovine Antibody Heavy Chains.
Front Immunol, 10, 2019
5XOB
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BU of 5xob by Molmil
Crystal structure of apo TiaS (tRNAIle2 agmatidine synthetase)
分子名称: MAGNESIUM ION, ZINC ION, tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS
著者Dong, J.
登録日2017-05-27
公開日2018-08-29
最終更新日2018-10-24
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Structure of tRNA-Modifying Enzyme TiaS and Motions of Its Substrate Binding Zinc Ribbon.
J. Mol. Biol., 430, 2018

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