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PDB: 739 results

7BBY
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Crystal structure of aldo-keto reductase with C-terminal His tag from Agrobacterium tumefaciens
Descriptor: Aryl-alcohol dehydrogenase, PHOSPHATE ION
Authors:Snow, A, Sharma, M, Davies, G.J.
Deposit date:2020-12-18
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7BC1
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Crystal structure of aldo-keto reductase from Agrobacterium tumefaciens in a ternary complex with NADPH and glucose
Descriptor: Aryl-alcohol dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, alpha-D-glucopyranose
Authors:Snow, A, Sharma, M, Davies, G.J.
Deposit date:2020-12-18
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7BBZ
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Crystal structure of apo aldo-keto reductase from Agrobacterium tumefaciens
Descriptor: Aryl-alcohol dehydrogenase
Authors:Snow, A, Sharma, M, Davies, G.J.
Deposit date:2020-12-18
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
1UQT
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BU of 1uqt by Molmil
Trehalose-6-phosphate from E. coli bound with UDP-2-fluoro glucose.
Descriptor: ALPHA, ALPHA-TREHALOSE-PHOSPHATE SYNTHASE, URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE
Authors:Gibson, R.P, Tarling, C.A, Roberts, S, Withers, S.G, Davies, G.J.
Deposit date:2003-10-20
Release date:2003-12-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The donor subsite of trehalose-6-phosphate synthase: binary complexes with UDP-glucose and UDP-2-deoxy-2-fluoro-glucose at 2 A resolution.
J. Biol. Chem., 279, 2004
1W3J
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Family 1 b-glucosidase from Thermotoga maritima in complex with tetrahydrooxazine
Descriptor: BETA-GLUCOSIDASE, TETRAHYDROOXAZINE
Authors:Gloster, T.M, Macdonald, J.M, Tarling, C.A, Stick, R.V, Withers, S.W, Davies, G.J.
Deposit date:2004-07-16
Release date:2004-09-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural, Thermodynamic, and Kinetic Analyses of Tetrahydrooxazine-Derived Inhibitors Bound to {Beta}-Glucosidases
J.Biol.Chem., 279, 2004
2IYA
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The crystal structure of macrolide glycosyltransferases: A blueprint for antibiotic engineering
Descriptor: (3S,5R,6S,7R,8R,11R,12S,13R,14S,15S)-6-HYDROXY-5,7,8,11,13,15-HEXAMETHYL-4,10-DIOXO-14-{[3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSYL]OXY}-1,9-DIOXASPIRO[2.13]HEXADEC-12-YL 2,6-DIDEOXY-3-O-METHYL-ALPHA-L-ARABINO-HEXOPYRANOSIDE, OLEANDOMYCIN GLYCOSYLTRANSFERASE, URIDINE-5'-DIPHOSPHATE
Authors:Bolam, D.N, Roberts, S.M, Proctor, M.R, Turkenburg, J.P, Dodson, E.J, Martinez-Fleites, C, Yang, M, Davis, B.G, Davies, G.J, Gilbert, H.J.
Deposit date:2006-07-13
Release date:2007-03-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Crystal Structure of Two Macrolide Glycosyltransferases Provides a Blueprint for Host Cell Antibiotic Immunity.
Proc.Natl.Acad.Sci.USA, 104, 2007
2IYF
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The crystal structure of macrolide glycosyltransferases: A blueprint for antibiotic engineering
Descriptor: ERYTHROMYCIN A, MAGNESIUM ION, OLEANDOMYCIN GLYCOSYLTRANSFERASE, ...
Authors:Bolam, D.N, Roberts, S.M, Proctor, M.R, Turkenburg, J.P, Dodson, E.J, Martinez-Fleites, C, Yang, M, Davis, B.G, Davies, G.J, Gilbert, H.J.
Deposit date:2006-07-17
Release date:2007-03-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Crystal Structure of Two Macrolide Glycosyltransferases Provides a Blueprint for Host Cell Antibiotic Immunity.
Proc.Natl.Acad.Sci.USA, 104, 2007
1WCU
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BU of 1wcu by Molmil
CBM29_1, A Family 29 Carbohydrate Binding Module from Piromyces equi
Descriptor: GLYCEROL, NON-CATALYTIC PROTEIN 1
Authors:Flint, J, Bolam, D.N, Nurizzo, D, Taylor, E.J, Williamson, M.P, Walters, C, Davis, G.J, Gilbert, H.J.
Deposit date:2004-11-22
Release date:2005-03-31
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Probing the Mechanism of Ligand Recognition in Family 29 Carbohydrate-Binding Modules
J.Biol.Chem., 280, 2005
1B65
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BU of 1b65 by Molmil
Structure of l-aminopeptidase d-ala-esterase/amidase from ochrobactrum anthropi, a prototype for the serine aminopeptidases, reveals a new variant among the ntn hydrolase fold
Descriptor: PROTEIN (AMINOPEPTIDASE)
Authors:Bompard-Gilles, C, Villeret, V, Davies, G.J, Fanuel, L, Joris, B, Frere, J.M, Van Beeumen, J.
Deposit date:1999-01-20
Release date:1999-07-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:A new variant of the Ntn hydrolase fold revealed by the crystal structure of L-aminopeptidase D-ala-esterase/amidase from Ochrobactrum anthropi.
Structure Fold.Des., 8, 2000
8RVK
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BU of 8rvk by Molmil
Maltodextrin phosphorylase (MalP) in complex with a alpha-1,2-cyclophellitol analogue
Descriptor: (3~{a}~{R},4~{R},5~{R},6~{R},7~{a}~{S})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-3~{a},4,5,6,7,7~{a}-hexahydro-3~{H}-1,3-benzoxazol-2-one, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Bennett, M, Ofman, T.P, Overkleeft, H.S, Davies, G.J.
Deposit date:2024-02-01
Release date:2024-05-15
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Conformational and Electronic Variations in 1,2- and 1,5a-Cyclophellitols and their Impact on Retaining alpha-Glucosidase Inhibition.
Chemistry, 2024
2CET
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BU of 2cet by Molmil
Beta-glucosidase from Thermotoga maritima in complex with phenethyl- substituted glucoimidazole
Descriptor: (5R,6R,7S,8S)-5-(HYDROXYMETHYL)-2-(2-PHENYLETHYL)-1,5,6,7,8,8A-HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL, ACETATE ION, BETA-GLUCOSIDASE A, ...
Authors:Gloster, T.M, Roberts, S, Vasella, A, Davies, G.J.
Deposit date:2006-02-10
Release date:2006-09-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural, Kinetic, and Thermodynamic Analysis of Glucoimidazole-Derived Glycosidase Inhibitors.
Biochemistry, 45, 2006
2CES
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BU of 2ces by Molmil
Beta-glucosidase from Thermotoga maritima in complex with glucoimidazole
Descriptor: ACETATE ION, BETA-GLUCOSIDASE A, CALCIUM ION, ...
Authors:Gloster, T.M, Roberts, S, Vasella, A, Davies, G.J.
Deposit date:2006-02-10
Release date:2006-09-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural, Kinetic, and Thermodynamic Analysis of Glucoimidazole-Derived Glycosidase Inhibitors.
Biochemistry, 45, 2006
2CBU
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BU of 2cbu by Molmil
Beta-glucosidase from Thermotoga maritima in complex with castanospermine
Descriptor: ACETATE ION, BETA-GLUCOSIDASE A, CALCIUM ION, ...
Authors:Gloster, T.M, Davies, G.J, Madsen, R.
Deposit date:2006-01-09
Release date:2006-02-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Dissection of Conformationally Restricted Inhibitors Binding to a Beta-Glucosidase.
Chembiochem, 7, 2006
2CBV
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Beta-glucosidase from Thermotoga maritima in complex with calystegine B2
Descriptor: ACETATE ION, BETA-GLUCOSIDASE A, CALYSTEGINE B2
Authors:Gloster, T.M, Madsen, R, Davies, G.J.
Deposit date:2006-01-09
Release date:2006-02-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Dissection of Conformationally Restricted Inhibitors Binding to a Beta-Glucosidase.
Chembiochem, 7, 2006
8A3H
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BU of 8a3h by Molmil
Cellobiose-derived imidazole complex of the endoglucanase cel5A from Bacillus agaradhaerens at 0.97 A resolution
Descriptor: (5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl beta-D-glucopyranoside, ACETATE ION, GLYCEROL, ...
Authors:Varrot, A, Schulein, M, Pipelier, M, Vasella, A, Davies, G.J.
Deposit date:1999-01-20
Release date:2000-01-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Lateral Protonation of a Glycosidase Inhibitor. Structure of the Bacillus agaradhaerens Cel5A in Complex with a Cellobiose-Derived Imidazole at 0.97 A Resolution
J.Am.Chem.Soc., 121, 1999
7OP6
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BU of 7op6 by Molmil
Bacteroides thetaiotaomicron mannosidase GH2 with beta-manno-configured cyclophellitol aziridine
Descriptor: (1~{R},2~{R},3~{S},4~{R},5~{R},6~{R})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol, 1,2-ETHANEDIOL, BROMIDE ION, ...
Authors:McGregor, N.G.S, Beenakker, T.J.M, Kuo, C, Wong, C, Offen, W.A, Armstrong, Z, Codee, J.D.C, Aerts, J.M.F.G, Florea, B.I, Overkleeft, H.S, Davies, G.J.
Deposit date:2021-05-29
Release date:2022-05-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Synthesis of broad-specificity activity-based probes for exo -beta-mannosidases.
Org.Biomol.Chem., 20, 2022
7OU6
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BU of 7ou6 by Molmil
Human O-GlcNAc hydrolase in complex with DNJNAc-thiazolidines
Descriptor: Protein O-GlcNAcase, ~{N}-[(3~{Z},6~{S},7~{R},8~{R},8~{a}~{S})-7,8-bis(oxidanyl)-3-(phenylmethyl)imino-1,5,6,7,8,8~{a}-hexahydro-[1,3]thiazolo[3,4-a]pyridin-6-yl]ethanamide
Authors:Males, A, Davies, G.J, Gonzalez-Cuesta, M, Mellet, C.O, Fernandez, J.M.G, Sidhu, P, Ashmus, R, Busmann, J, Vocadlo, D.J, Foster, L.
Deposit date:2021-06-11
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Bicyclic Picomolar OGA Inhibitors Enable Chemoproteomic Mapping of Its Endogenous Post-translational Modifications
J.Am.Chem.Soc., 144, 2022
8B2E
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BU of 8b2e by Molmil
Muramidase from Kionochaeta sp natural catalytic core
Descriptor: CADMIUM ION, Muramidase
Authors:Moroz, O.V, Blagova, E, Lebedev, A.A, Skov, L.K, Pache, R.A, Schnorr, K.M, Kiemer, L, Nymand-Grarup, S, Ming, L, Ye, L, Klausen, M, Cohn, M.T, Schmidt, E.G.W, Davies, G.J, Wilson, K.S.
Deposit date:2022-09-13
Release date:2023-07-19
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Module walking using an SH3-like cell-wall-binding domain leads to a new GH184 family of muramidases.
Acta Crystallogr D Struct Biol, 79, 2023
8B2G
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BU of 8b2g by Molmil
SH3-like domain from Penicillium virgatum muramidase
Descriptor: 1,2-ETHANEDIOL, SH3b domain-containing protein, ZINC ION
Authors:Moroz, O.V, Blagova, E, Lebedev, A.A, Skov, L.K, Pache, R.A, Schnorr, K.M, Kiemer, L, Nymand-Grarup, S, Ming, L, Ye, L, Klausen, M, Cohn, M.T, Schmidt, E.G.W, Davies, G.J, Wilson, K.S.
Deposit date:2022-09-13
Release date:2023-07-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Module walking using an SH3-like cell-wall-binding domain leads to a new GH184 family of muramidases.
Acta Crystallogr D Struct Biol, 79, 2023
8B2F
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BU of 8b2f by Molmil
SH3-like cell wall binding domain of the GH24 family muramidase from Trichophaea saccata in complex with triglycine
Descriptor: 1,2-ETHANEDIOL, GLY-GLY-GLY, SH3-like cell wall binding domain-containing protein, ...
Authors:Moroz, O.V, Blagova, E, Lebedev, A.A, Skov, L.K, Pache, R.A, Schnorr, K.M, Kiemer, L, Nymand-Grarup, S, Ming, L, Ye, L, Klausen, M, Cohn, M.T, Schmidt, E.G.W, Davies, G.J, Wilson, K.S.
Deposit date:2022-09-13
Release date:2023-07-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.183 Å)
Cite:Module walking using an SH3-like cell-wall-binding domain leads to a new GH184 family of muramidases.
Acta Crystallogr D Struct Biol, 79, 2023
8B2H
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BU of 8b2h by Molmil
Muramidase from Thermothielavioides terrestris, catalytic domain
Descriptor: 1,2-ETHANEDIOL, SH3b domain-containing protein, ZINC ION
Authors:Moroz, O.V, Blagova, E, Lebedev, A.A, Skov, L.K, Pache, R.A, Schnorr, K.M, Kiemer, L, Nymand-Grarup, S, Ming, L, Ye, L, Klausen, M, Cohn, M.T, Schmidt, E.G.W, Davies, G.J, Wilson, K.S.
Deposit date:2022-09-13
Release date:2023-07-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Module walking using an SH3-like cell-wall-binding domain leads to a new GH184 family of muramidases.
Acta Crystallogr D Struct Biol, 79, 2023
8B2S
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BU of 8b2s by Molmil
GH24 family muramidase from Trichophaea saccata with an SH3-like cell wall binding domain
Descriptor: GH24 family muramidase, POTASSIUM ION
Authors:Moroz, O.V, Blagova, E, Lebedev, A.A, Skov, L.K, Pache, R.A, Schnorr, K.M, Kiemer, L, Nymand-Grarup, S, Ming, L, Ye, L, Klausen, M, Cohn, M.T, Schmidt, E.G.W, Davies, G.J, Wilson, K.S.
Deposit date:2022-09-14
Release date:2023-07-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Module walking using an SH3-like cell-wall-binding domain leads to a new GH184 family of muramidases.
Acta Crystallogr D Struct Biol, 79, 2023
7PR6
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BU of 7pr6 by Molmil
Crystal structure of E. coli beta-glucuronidase in complex with covalent inhibitor ME727
Descriptor: (2R,3S,5R,6R)-2,3,4,5,6-pentakis(oxidanyl)cyclohexane-1-carboxylic acid, Beta-glucuronidase
Authors:Wu, L, Armstrong, Z, Davies, G.J.
Deposit date:2021-09-20
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Mechanism-based heparanase inhibitors reduce cancer metastasis in vivo.
Proc.Natl.Acad.Sci.USA, 119, 2022
7PZG
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BU of 7pzg by Molmil
Phocaeicola vulgatus sialic acid esterase at 1.44 Angstrom resolution
Descriptor: 1,2-ETHANEDIOL, Lysophospholipase L1, MAGNESIUM ION, ...
Authors:Scott, H, Armstrong, Z, Davies, G.J.
Deposit date:2021-10-12
Release date:2022-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:The structure of Phocaeicola vulgatus sialic acid acetylesterase.
Acta Crystallogr D Struct Biol, 78, 2022
7PZH
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BU of 7pzh by Molmil
Phocaeicola vulgatus sialic acid esterase at 2.06 Angstrom resolution
Descriptor: Lysophospholipase L1, MAGNESIUM ION
Authors:Scott, H, Armstrong, Z, Davies, G.J.
Deposit date:2021-10-12
Release date:2022-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:The structure of Phocaeicola vulgatus sialic acid acetylesterase.
Acta Crystallogr D Struct Biol, 78, 2022

219869

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