Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1609 件

5D1C
DownloadVisualize
BU of 5d1c by Molmil
Crystal structure of D233G-Y306F HDAC8 in complex with a tetrapeptide substrate
分子名称: GLYCEROL, HDAC8 Fluor de Lys tetrapeptide substrate, Histone deacetylase 8, ...
著者Decroos, C, Christianson, N.H, Gullett, L.E, Bowman, C.M, Christianson, K.E, Deardorff, M.A, Christianson, D.W.
登録日2015-08-04
公開日2015-10-21
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.422 Å)
主引用文献Biochemical and Structural Characterization of HDAC8 Mutants Associated with Cornelia de Lange Syndrome Spectrum Disorders.
Biochemistry, 54, 2015
5CXX
DownloadVisualize
BU of 5cxx by Molmil
Structure of a CE1 ferulic acid esterase, AmCE1/Fae1A, from Anaeromyces mucronatus in complex with Ferulic acid
分子名称: 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, GLYCEROL, SULFATE ION, ...
著者Gruninger, R.J, Abbott, D.W.
登録日2015-07-29
公開日2016-04-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Contributions of a unique beta-clamp to substrate recognition illuminates the molecular basis of exolysis in ferulic acid esterases.
Biochem.J., 473, 2016
1EK1
DownloadVisualize
BU of 1ek1 by Molmil
CRYSTAL STRUCTURE OF MURINE SOLUBLE EPOXIDE HYDROLASE COMPLEXED WITH CIU INHIBITOR
分子名称: EPOXIDE HYDROLASE, N-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA
著者Argiriadi, M.A, Morisseau, C, Goodrow, M.H, Dowdy, D.L, Hammock, B.D, Christianson, D.W.
登録日2000-03-06
公開日2000-05-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Binding of alkylurea inhibitors to epoxide hydrolase implicates active site tyrosines in substrate activation.
J.Biol.Chem., 275, 2000
5EL9
DownloadVisualize
BU of 5el9 by Molmil
A. thaliana IGPD2 in complex with the triazole-phosphonate inhibitor, (S)-C348, to 1.1A resolution
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Imidazoleglycerol-phosphate dehydratase 2, ...
著者Bisson, C, Britton, K.L, Sedelnikova, S.E, Rodgers, H.F, Eadsforth, T.C, Viner, R.C, Hawkes, T.R, Baker, P.J, Rice, D.W.
登録日2015-11-04
公開日2016-10-05
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
Angew.Chem.Int.Ed.Engl., 55, 2016
1EL0
DownloadVisualize
BU of 1el0 by Molmil
SOLUTION STRUCTURE OF THE HUMAN CC CHEMOKINE, I-309
分子名称: I-309
著者Keizer, D.W, Crump, M.P, Lee, T.W, Slupsky, C.M, Clark-Lewis, I, Sykes, B.D.
登録日2000-03-11
公開日2000-09-01
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Human CC chemokine I-309, structural consequences of the additional disulfide bond.
Biochemistry, 39, 2000
5EDU
DownloadVisualize
BU of 5edu by Molmil
Crystal structure of human histone deacetylase 6 catalytic domain 2 in complex with trichostatin A
分子名称: Maltose-binding periplasmic protein, Histone deacetylase 6 chimera, POTASSIUM ION, ...
著者Hai, Y, Christianson, D.W.
登録日2015-10-22
公開日2016-07-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Histone deacetylase 6 structure and molecular basis of catalysis and inhibition.
Nat.Chem.Biol., 12, 2016
1ENO
DownloadVisualize
BU of 1eno by Molmil
BRASSICA NAPUS ENOYL ACP REDUCTASE/NAD BINARY COMPLEX AT PH 8.0 AND ROOM TEMPERATURE
分子名称: ENOYL ACYL CARRIER PROTEIN REDUCTASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Rafferty, J.B, Rice, D.W.
登録日1995-10-18
公開日1996-10-14
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Common themes in redox chemistry emerge from the X-ray structure of oilseed rape (Brassica napus) enoyl acyl carrier protein reductase.
Structure, 3, 1995
5EF8
DownloadVisualize
BU of 5ef8 by Molmil
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with panobinostat
分子名称: 1,2-ETHANEDIOL, GLYCEROL, Hdac6 protein, ...
著者Hai, Y, Christianson, D.W.
登録日2015-10-23
公開日2016-07-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Histone deacetylase 6 structure and molecular basis of catalysis and inhibition.
Nat.Chem.Biol., 12, 2016
8S9U
DownloadVisualize
BU of 8s9u by Molmil
CRISPR-Cas type III-D effector complex bound to a target RNA
分子名称: CRISPR RNA, Cas10, Cas7-2x, ...
著者Schwartz, E.A, Taylor, D.W.
登録日2023-03-30
公開日2024-04-24
実験手法ELECTRON MICROSCOPY (2.77 Å)
主引用文献Type III CRISPR-Cas effectors act as protein-assisted ribozymes
To Be Published
5EEM
DownloadVisualize
BU of 5eem by Molmil
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2
分子名称: FORMIC ACID, Hdac6 protein, POTASSIUM ION, ...
著者Hai, Y, Christianson, D.W.
登録日2015-10-23
公開日2016-07-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Histone deacetylase 6 structure and molecular basis of catalysis and inhibition.
Nat.Chem.Biol., 12, 2016
8S9V
DownloadVisualize
BU of 8s9v by Molmil
CRISPR-Cas type III-D effector complex bound to a self-target RNA in the pre-cleavage state
分子名称: CRISPR RNA, Cas10, Cas7-2x, ...
著者Schwartz, E.A, Taylor, D.W.
登録日2023-03-30
公開日2024-04-24
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献RNA targeting and cleavage by the type III-Dv CRISPR effector complex.
Nat Commun, 15, 2024
8S9X
DownloadVisualize
BU of 8s9x by Molmil
CRISPR-Cas type III-D effector complex bound to self-target RNA in a post-cleavage state
分子名称: CRISPR RNA, Cas10, Cas7-2x, ...
著者Schwartz, E.A, Taylor, D.W.
登録日2023-03-30
公開日2024-04-24
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.44 Å)
主引用文献RNA targeting and cleavage by the type III-Dv CRISPR effector complex.
Nat Commun, 15, 2024
8S9T
DownloadVisualize
BU of 8s9t by Molmil
CRISPR-Cas type III-D effector complex
分子名称: CRISPR RNA, Cas10, Cas7-2x, ...
著者Schwartz, E.A, Taylor, D.W.
登録日2023-03-30
公開日2024-04-24
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (2.52 Å)
主引用文献RNA targeting and cleavage by the type III-Dv CRISPR effector complex.
Nat Commun, 15, 2024
5EFJ
DownloadVisualize
BU of 5efj by Molmil
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with HC toxin
分子名称: 1,2-ETHANEDIOL, GLYCEROL, HC toxin, ...
著者Hai, Y, Christianson, D.W.
登録日2015-10-23
公開日2016-07-27
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Histone deacetylase 6 structure and molecular basis of catalysis and inhibition.
Nat.Chem.Biol., 12, 2016
8TC9
DownloadVisualize
BU of 8tc9 by Molmil
Human asparaginyl-tRNA synthetase bound to OSM-S-106
分子名称: Asparagine--tRNA ligase, cytoplasmic, GLYCEROL, ...
著者Dogovski, C, Metcalfe, R.D, Xie, S.C, Morton, C.J, Tilley, L, Griffin, M.D.W.
登録日2023-06-30
公開日2024-02-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Reaction hijacking inhibition of Plasmodium falciparum asparagine tRNA synthetase.
Nat Commun, 15, 2024
8TC8
DownloadVisualize
BU of 8tc8 by Molmil
Human asparaginyl-tRNA synthetase bound to adenosine 5'-sulfamate
分子名称: 5'-O-[N-(L-ASPARAGINYL)SULFAMOYL]ADENOSINE, Asparagine--tRNA ligase, cytoplasmic, ...
著者Dogovski, C, Metcalfe, R.D, Xie, S.C, Morton, C.J, Tilley, L, Griffin, M.D.W.
登録日2023-06-30
公開日2024-02-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Reaction hijacking inhibition of Plasmodium falciparum asparagine tRNA synthetase.
Nat Commun, 15, 2024
8TC7
DownloadVisualize
BU of 8tc7 by Molmil
Human asparaginyl-tRNA synthetase, apo form
分子名称: Asparagine--tRNA ligase, cytoplasmic, CHLORIDE ION, ...
著者Dogovski, C, Metcalfe, R.D, Xie, S.C, Morton, C.J, Tilley, L, Griffin, M.D.W.
登録日2023-06-30
公開日2024-02-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Reaction hijacking inhibition of Plasmodium falciparum asparagine tRNA synthetase.
Nat Commun, 15, 2024
5DC7
DownloadVisualize
BU of 5dc7 by Molmil
Crystal structure of D176A-Y306F HDAC8 in complex with a tetrapeptide substrate
分子名称: Fluor-de-Lys tetrapeptide assay substrate, GLYCEROL, Histone deacetylase 8, ...
著者Decroos, C, Lee, M.S, Christianson, D.W.
登録日2015-08-23
公開日2016-02-03
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献General Base-General Acid Catalysis in Human Histone Deacetylase 8.
Biochemistry, 55, 2016
1EK2
DownloadVisualize
BU of 1ek2 by Molmil
CRYSTAL STRUCTURE OF MURINE SOLUBLE EPOXIDE HYDROLASE COMPLEXED WITH CDU INHIBITOR
分子名称: EPOXIDE HYDROLASE, N-CYCLOHEXYL-N'-DECYLUREA
著者Argiriadi, M.A, Morisseau, C, Goodrow, M.H, Dowdy, D.L, Hammock, B.D, Christianson, D.W.
登録日2000-03-06
公開日2000-05-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Binding of alkylurea inhibitors to epoxide hydrolase implicates active site tyrosines in substrate activation.
J.Biol.Chem., 275, 2000
8TL0
DownloadVisualize
BU of 8tl0 by Molmil
Structure of activated SAVED-CHAT filament
分子名称: CHAT domain-containing protein, RNA (5'-R(*AP*AP*A)-3')
著者Bravo, J.P.K, Taylor, D.W.
登録日2023-07-26
公開日2024-03-06
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Type III-B CRISPR-Cas cascade of proteolytic cleavages.
Science, 383, 2024
6VYJ
DownloadVisualize
BU of 6vyj by Molmil
Human UHRF1 TTD domain in complex with a fragment
分子名称: 2,4-dimethylpyridine, E3 ubiquitin-protein ligase UHRF1, beta-D-glucopyranose
著者Campbell, J.C, Chang, L, Young, D.W.
登録日2020-02-26
公開日2021-01-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Discovery of small molecules targeting the tandem tudor domain of the epigenetic factor UHRF1 using fragment-based ligand discovery.
Sci Rep, 11, 2021
6UFO
DownloadVisualize
BU of 6ufo by Molmil
Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with 7-[(3-aminopropyl)amino]-1-methoxyheptan-2-one
分子名称: 7-[(3-aminopropyl)amino]-1-methoxyheptane-2,2-diol, PHOSPHATE ION, POTASSIUM ION, ...
著者Herbst-Gervasoni, C.J, Christianson, D.W.
登録日2019-09-24
公開日2019-12-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Binding ofN8-Acetylspermidine Analogues to Histone Deacetylase 10 Reveals Molecular Strategies for Blocking Polyamine Deacetylation.
Biochemistry, 58, 2019
6UIL
DownloadVisualize
BU of 6uil by Molmil
Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with 7-[(3-aminopropyl)amino]-1,1,1-trifluoroheptan-2-one
分子名称: 7-[(3-aminopropyl)amino]-1,1,1-trifluoroheptane-2,2-diol, PHOSPHATE ION, POTASSIUM ION, ...
著者Herbst-Gervasoni, C.J, Christianson, D.W.
登録日2019-10-01
公開日2019-12-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Binding ofN8-Acetylspermidine Analogues to Histone Deacetylase 10 Reveals Molecular Strategies for Blocking Polyamine Deacetylation.
Biochemistry, 58, 2019
6UKD
DownloadVisualize
BU of 6ukd by Molmil
Co-complex of S. pyogenes 10782 streptopain bound with a nitrile-based specific covalent inhibitor
分子名称: NITRATE ION, Streptopain, benzyl [(2S)-1-(3-nitrophenyl)-3-oxobutan-2-yl]carbamate
著者Wolan, D.W, Woehl, J.L, Kitamura, S.
登録日2019-10-04
公開日2020-09-09
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.589 Å)
主引用文献An Irreversible Inhibitor to Probe the Role ofStreptococcus pyogenesCysteine Protease SpeB in Evasion of Host Complement Defenses.
Acs Chem.Biol., 15, 2020
6UO4
DownloadVisualize
BU of 6uo4 by Molmil
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 1 (CD1) Y363F mutant complexed with Trichostatin A
分子名称: Histone deacetylase 6, POTASSIUM ION, TRICHOSTATIN A, ...
著者Osko, J.D, Christianson, D.W.
登録日2019-10-14
公開日2019-12-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.26830983 Å)
主引用文献Structural Basis of Catalysis and Inhibition of HDAC6 CD1, the Enigmatic Catalytic Domain of Histone Deacetylase 6.
Biochemistry, 58, 2019

227111

件を2024-11-06に公開中

PDB statisticsPDBj update infoContact PDBjnumon