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PDB: 996 results
1R48
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BU of 1r48 by Molmil
Solution structure of the C-terminal cytoplasmic domain residues 468-497 of Escherichia coli protein ProP
Descriptor: Proline/betaine transporter
Authors:Zoetewey, D.L, Tripet, B.P, Kutateladze, T.G, Overduin, M.J, Wood, J.M, Hodges, R.S.
Deposit date:2003-10-03
Release date:2003-12-23
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of the C-terminal Antiparallel Coiled-coil Domain from Escherichia coli Osmosensor ProP.
J.Mol.Biol., 334, 2003
1PE1
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BU of 1pe1 by Molmil
Aquifex aeolicus KDO8PS in complex with cadmium and 2-PGA
Descriptor: 2-PHOSPHOGLYCERIC ACID, 2-dehydro-3-deoxyphosphooctonate aldolase, CADMIUM ION, ...
Authors:Wang, J, Xu, X, Grison, C, Petek, S, Coutrot, P, Birck, M.R, Woodard, R.W, Gatti, D.L.
Deposit date:2003-05-20
Release date:2004-02-03
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structure-Based Design of Novel Inhibitors of 3-Deoxy-D-manno-octulosonate 8-Phosphate Synthase
DRUG DES.DISCOVERY, 18, 2003
1PH8
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BU of 1ph8 by Molmil
CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGCGG
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*CP*GP*G)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', CHLORIDE ION, ...
Authors:Theobald, D.L, Schultz, S.C.
Deposit date:2003-05-29
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Nucleotide Shuffling and Ssdna Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes
Embo J., 22, 2003
1PH6
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BU of 1ph6 by Molmil
Crystal Structure of THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGTGG
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*TP*GP*G)-3', SODIUM ION, ...
Authors:Theobald, D.L, Schultz, S.C.
Deposit date:2003-05-29
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes
Embo J., 22, 2003
1PHJ
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BU of 1phj by Molmil
CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GG(3DR)GTTTTGGGG
Descriptor: 5'-D(*GP*GP*(3DR)P*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', Telomere-binding protein alpha subunit, ...
Authors:Theobald, D.L, Schultz, S.C.
Deposit date:2003-05-29
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes
Embo J., 22, 2003
1PH9
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BU of 1ph9 by Molmil
CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGAGG
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*AP*GP*G)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', CHLORIDE ION, ...
Authors:Theobald, D.L, Schultz, S.C.
Deposit date:2003-05-29
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes
Embo J., 22, 2003
1PCK
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BU of 1pck by Molmil
Aquifex aeolicus KDO8PS in complex with Z-methyl-PEP
Descriptor: 2-(PHOSPHONOOXY)BUTANOIC ACID, 2-dehydro-3-deoxyphosphooctonate aldolase, CADMIUM ION, ...
Authors:Wang, J, Xu, X, Grison, C, Petek, S, Coutrot, P, Birck, M, Woodard, R.W, Gatti, D.L.
Deposit date:2003-05-16
Release date:2004-02-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-Based Design of Novel Inhibitors of 3-Deoxy-D-manno-octulosonate 8-Phosphate Synthase.
DRUG DES.DISCOVERY, 18, 2003
1PH1
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BU of 1ph1 by Molmil
CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGGGT
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', Telomere-binding protein alpha subunit, Telomere-binding protein beta subunit
Authors:Theobald, D.L, Schultz, S.C.
Deposit date:2003-05-29
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Nucleotide Shuffling and Ssdna Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes
Embo J., 22, 2003
1PH2
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BU of 1ph2 by Molmil
CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTG
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*G)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', CHLORIDE ION, ...
Authors:Theobald, D.L, Schultz, S.C.
Deposit date:2003-05-29
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes
Embo J., 22, 2003
1T96
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BU of 1t96 by Molmil
r106g kdo8ps with pep
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, CADMIUM ION, PHOSPHATE ION, ...
Authors:Gatti, D.L.
Deposit date:2004-05-14
Release date:2005-06-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Effects of the Arg106==>Gly mutation on the catalytic and conformational cycle of Aquifex aeolicus KDO8P synthase.
To be Published
1T5L
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BU of 1t5l by Molmil
Crystal structure of the DNA repair protein UvrB point mutant Y96A revealing a novel fold for domain 2
Descriptor: UvrABC system protein B, ZINC ION
Authors:Truglio, J.J, Croteau, D.L, Skorvaga, M, DellaVecchia, M.J, Theis, K, Mandavilli, B.S, Van Houten, B, Kisker, C.
Deposit date:2004-05-04
Release date:2004-06-22
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Interactions between UvrA and UvrB: the role of UvrB's domain 2 in nucleotide excision repair
Embo J., 23, 2004
1TFZ
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BU of 1tfz by Molmil
Structural basis for herbicidal inhibitor selectivity revealed by comparison of crystal structures of plant and mammalian 4-hydroxyphenylpyruvate dioxygenases
Descriptor: (1-TERT-BUTYL-5-HYDROXY-1H-PYRAZOL-4-YL)[6-(METHYLSULFONYL)-4'-METHOXY-2-METHYL-1,1'-BIPHENYL-3-YL]METHANONE, 4-hydroxyphenylpyruvate dioxygenase, FE (III) ION
Authors:Yang, C, Pflugrath, J.W, Camper, D.L, Foster, M.L, Pernich, D.J, Walsh, T.A.
Deposit date:2004-05-27
Release date:2004-08-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for herbicidal inhibitor selectivity revealed by comparison of crystal structures of plant and Mammalian 4-hydroxyphenylpyruvate dioxygenases
Biochemistry, 43, 2004
1TEX
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BU of 1tex by Molmil
Mycobacterium smegmatis Stf0 Sulfotransferase with Trehalose
Descriptor: Stf0 Sulfotransferase, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
Authors:Mougous, J.D, Petzold, C.J, Senaratne, R.H, Lee, D.H, Akey, D.L, Lin, F.L, Munchel, S.E, Pratt, M.R, Riley, L.W, Leary, J.A, Berger, J.M, Bertozzi, C.R.
Deposit date:2004-05-25
Release date:2004-07-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Identification, function and structure of the mycobacterial sulfotransferase that initiates sulfolipid-1 biosynthesis.
Nat.Struct.Mol.Biol., 11, 2004
1PH3
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BU of 1ph3 by Molmil
CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTG
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*TP*G)-3', SODIUM ION, ...
Authors:Theobald, D.L, Schultz, S.C.
Deposit date:2003-05-29
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes
Embo J., 22, 2003
1PCW
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BU of 1pcw by Molmil
Aquifex aeolicus KDO8PS in complex with cadmium and APP, a bisubstrate inhibitor
Descriptor: 1-DEOXY-6-O-PHOSPHONO-1-[(PHOSPHONOMETHYL)AMINO]-L-THREO-HEXITOL, 2-dehydro-3-deoxyphosphooctonate aldolase, CADMIUM ION
Authors:Xu, X, Wang, J, Grison, C, Petek, S, Coutrot, P, Birck, M, Woodard, R.W, Gatti, D.L.
Deposit date:2003-05-17
Release date:2004-02-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure-Based Design of Novel Inhibitors of 3-Deoxy-D-manno-octulosonate 8-Phosphate Synthase.
Drug DES.DISCOVERY, 18, 2003
1PH5
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BU of 1ph5 by Molmil
CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTG(3DR)GG
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*(3DR)P*GP*G)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', CHLORIDE ION, ...
Authors:Theobald, D.L, Schultz, S.C.
Deposit date:2003-05-29
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes
Embo J., 22, 2003
1PH4
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BU of 1ph4 by Molmil
CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGCG
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*CP*G)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', CHLORIDE ION, ...
Authors:Theobald, D.L, Schultz, S.C.
Deposit date:2003-05-29
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes
Embo J., 22, 2003
1PH7
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BU of 1ph7 by Molmil
CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGIGG
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*IP*GP*G)-3', CHLORIDE ION, ...
Authors:Theobald, D.L, Schultz, S.C.
Deposit date:2003-05-29
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes
Embo J., 22, 2003
1T4Q
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BU of 1t4q by Molmil
Interleukin 1 beta F101W
Descriptor: Interleukin-1 beta
Authors:Adamek, D.H, Guerrero, L, Caspar, D.L.
Deposit date:2004-04-30
Release date:2004-12-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and energetic consequences of mutations in a solvated hydrophobic cavity.
J.Mol.Biol., 346, 2005
3GUT
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BU of 3gut by Molmil
Crystal structure of a higher-order complex of p50:RelA bound to the HIV-1 LTR
Descriptor: HIV-LTR Core Forward Strand, HIV-LTR Core Reverse Strand, Nuclear factor NF-kappa-B p105 subunit, ...
Authors:Stroud, J.C, Oltman, A.J, Han, A, Bates, D.L, Chen, L.
Deposit date:2009-03-30
Release date:2009-09-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.59 Å)
Cite:Structural basis of HIV-1 activation by NF-kappaB--a higher-order complex of p50:RelA bound to the HIV-1 LTR.
J.Mol.Biol., 393, 2009
3GYU
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BU of 3gyu by Molmil
Nuclear receptor DAF-12 from parasitic nematode Strongyloides stercoralis in complex with its physiological ligand dafachronic acid delta 7
Descriptor: (5beta,14beta,17alpha,25R)-3-oxocholest-7-en-26-oic acid, Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily, SRC1
Authors:Zhou, X.E, Wang, Z, Suino-Powell, K, Motola, D.L, Conneely, A, Ogata, C, Sharma, K.K, Auchus, R.J, Kliewer, S.A, Xu, H.E, Mangelsdorf, D.J.
Deposit date:2009-04-05
Release date:2009-07-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification of the nuclear receptor DAF-12 as a therapeutic target in parasitic nematodes.
Proc.Natl.Acad.Sci.USA, 106, 2009
3HFE
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BU of 3hfe by Molmil
A trimeric form of the Kv7.1 A domain Tail
Descriptor: Potassium voltage-gated channel subfamily KQT member 1
Authors:Xu, Q, Minor, D.L.
Deposit date:2009-05-11
Release date:2009-09-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of a trimeric form of the K(V)7.1 (KCNQ1) A-domain tail coiled-coil reveals structural plasticity and context dependent changes in a putative coiled-coil trimerization motif.
Protein Sci., 18, 2009
3HT8
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BU of 3ht8 by Molmil
5-chloro-2-methylphenol in complex with T4 lysozyme L99A/M102Q
Descriptor: 5-chloro-2-methylphenol, Lysozyme, PHOSPHATE ION
Authors:Boyce, S.E, Mobley, D.L, Rocklin, G.J, Graves, A.P, Dill, K.A, Shoichet, B.K.
Deposit date:2009-06-11
Release date:2009-11-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Predicting ligand binding affinity with alchemical free energy methods in a polar model binding site.
J.Mol.Biol., 394, 2009
3HTG
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BU of 3htg by Molmil
2-ethoxy-3,4-dihydro-2h-pyran in complex with T4 lysozyme L99A/M102Q
Descriptor: (2S)-2-ethoxy-3,4-dihydro-2H-pyran, BETA-MERCAPTOETHANOL, Lysozyme, ...
Authors:Boyce, S.E, Mobley, D.L, Rocklin, G.J, Graves, A.P, Dill, K.A, Shoichet, B.K.
Deposit date:2009-06-11
Release date:2009-11-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Predicting ligand binding affinity with alchemical free energy methods in a polar model binding site.
J.Mol.Biol., 394, 2009
3HUA
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BU of 3hua by Molmil
4,5,6,7-tetrahydroindole in complex with T4 lysozyme L99A/M102Q
Descriptor: 4,5,6,7-tetrahydro-1H-indole, BETA-MERCAPTOETHANOL, Lysozyme, ...
Authors:Boyce, S.E, Mobley, D.L, Rocklin, G.J, Graves, A.P, Dill, K.A, Shoichet, B.K.
Deposit date:2009-06-13
Release date:2009-11-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Predicting ligand binding affinity with alchemical free energy methods in a polar model binding site.
J.Mol.Biol., 394, 2009

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