Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 2998 results

9BGP
DownloadVisualize
BU of 9bgp by Molmil
X-ray structure of the aminotransferase from Vibrio vulnificus responsible for the biosynthesis of 2,3-diacetamido-4-amino-2,3,4-trideoxy-arabinose in the presence of its internal aldimine
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, aminotransferase
Authors:Fait, D.J, Thoden, J.B, Holden, H.M.
Deposit date:2024-04-19
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Biochemical Investigation of an Aminotransferase Required for the Production of 2,3,4-triacetamido-2,3,4-trideoxy-L-arabinose
To Be Published
9BGR
DownloadVisualize
BU of 9bgr by Molmil
X-ray structure of the aminotransferase from Vibrio vulnificus responsible for the biosynthesis of 2,3-diacetamido-4-amino-2,3,4-trideoxy-arabinose in the presence of its external aldimine with 2,3-diacetamido-4-amino-2,3,4-trideoxy-l-arabinose
Descriptor: (2R,3R,4R,5R)-3,4-diacetamido-5-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methoxy)oxan-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name), 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
Authors:Fait, D.J, Thoden, J.B, Holden, H.M.
Deposit date:2024-04-19
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Biochemical Investigation of an Aminotransferase Required for the Production of 2,3,4-triacetamido-2,3,4-trideoxy-L-arabinose
To Be Published
8V1J
DownloadVisualize
BU of 8v1j by Molmil
Structure of an allelic variant of Puccinia graminis f. sp. tritici (Pgt) effector AvrSr27 (AvrSr27-1)
Descriptor: AvrSr27, ZINC ION
Authors:Outram, M.A, Williams, S.J, Ericsson, D.J.
Deposit date:2023-11-20
Release date:2024-06-12
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.41596365 Å)
Cite:AvrSr27 is a zinc-bound effector with a modular structure important for immune recognition.
New Phytol., 243, 2024
8URU
DownloadVisualize
BU of 8uru by Molmil
Spo11 core complex with hairpin DNA
Descriptor: Antiviral protein SKI8, Hairpin DNA, MAGNESIUM ION, ...
Authors:Yu, Y, Patel, D.J.
Deposit date:2023-10-26
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of the yeast Spo11 core complex bound to DNA
To Be Published
7JGX
DownloadVisualize
BU of 7jgx by Molmil
Solution NMR structure of neuroVAL, a derived peptide from wasp
Descriptor: neuroVAL derived peptide ILE-PHE-TRP-LEU-PHE-ARG-GLY-LYS-ALA-ASP-VAL-ALA-LEU-NH2
Authors:Muller, J.A.I, Craik, D.J, Koehbach, J.
Deposit date:2020-07-20
Release date:2020-12-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Antimicrobial and Anticancer Properties of Synthetic Peptides Derived from the Wasp Parachartergus fraternus.
Chembiochem, 22, 2021
7JLS
DownloadVisualize
BU of 7jls by Molmil
RV3666c bound to tripeptide
Descriptor: Peptide SER-VAL-ALA, Probable periplasmic dipeptide-binding lipoprotein DppA
Authors:Lee, R.E, Griffith, E.C, Miller, D.J.
Deposit date:2020-07-30
Release date:2021-06-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Biophysical analysis of the Mycobacteria tuberculosis peptide binding protein DppA reveals a stringent peptide binding pocket.
Tuberculosis (Edinb), 132, 2021
7JGY
DownloadVisualize
BU of 7jgy by Molmil
Solution NMR structure of protonectin, a peptide from wasp
Descriptor: Protonectin peptide ILE-LEU-GLY-THR-ILE-LEU-GLY-LEU-LEU-LYS-GLY-LEU-NH2
Authors:Muller, J.A.I, Craik, D.J, Koehbach, J.
Deposit date:2020-07-20
Release date:2020-12-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Antimicrobial and Anticancer Properties of Synthetic Peptides Derived from the Wasp Parachartergus fraternus.
Chembiochem, 22, 2021
7JHF
DownloadVisualize
BU of 7jhf by Molmil
Solution NMR structure of protonectin-F, a derived peptide from wasp
Descriptor: Protonectin-F derived peptide ILE-PHE-GLY-THR-ILE-LEU-GLY-PHE-LEU-LYS-GLY-LEU-NH2
Authors:Muller, J.A.I, Craik, D.J, Koehbach, J.
Deposit date:2020-07-20
Release date:2020-12-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Antimicrobial and Anticancer Properties of Synthetic Peptides Derived from the Wasp Parachartergus fraternus.
Chembiochem, 22, 2021
7JQG
DownloadVisualize
BU of 7jqg by Molmil
Crystal structure of human PPARgamma ligand binding domain Y473E mutant in complex with GW1929
Descriptor: (2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid, Peroxisome proliferator-activated receptor gamma
Authors:Shang, J, Kojetin, D.J.
Deposit date:2020-08-10
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural mechanism underlying ligand binding and activation of PPAR gamma.
Structure, 29, 2021
7K3J
DownloadVisualize
BU of 7k3j by Molmil
Crystal structure of dLC8 in complex with Panoramix TQT+TQ peptide
Descriptor: Dynein light chain 1, cytoplasmic, Protein panoramix, ...
Authors:Wang, J, Patel, D.J.
Deposit date:2020-09-11
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex.
Genes Dev., 35, 2021
7K3K
DownloadVisualize
BU of 7k3k by Molmil
Crystal structure of dLC8 in complex with Panoramix TQT peptide
Descriptor: Dynein light chain 1, cytoplasmic, Protein panoramix
Authors:Wang, J, Patel, D.J.
Deposit date:2020-09-11
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.415 Å)
Cite:Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex.
Genes Dev., 35, 2021
7K3L
DownloadVisualize
BU of 7k3l by Molmil
Crystal structure of dLC8 in complex with Panoramix TQ peptide
Descriptor: 1,2-ETHANEDIOL, Dynein light chain 1, cytoplasmic, ...
Authors:Wang, J, Patel, D.J.
Deposit date:2020-09-11
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex.
Genes Dev., 35, 2021
7K22
DownloadVisualize
BU of 7k22 by Molmil
Murine polyomavirus pentavalent capsomer with 8A7H5 Fab, subparticle reconstruction
Descriptor: 8A7H5 Fab heavy chain, 8A7H5 Fab light chain, Capsid protein VP1
Authors:Goetschius, D.J, Hafenstein, S.L.
Deposit date:2020-09-08
Release date:2020-10-07
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Antibody escape by polyomavirus capsid mutation facilitates neurovirulence.
Elife, 9, 2020
7K23
DownloadVisualize
BU of 7k23 by Molmil
Murine polyomavirus hexavalent capsomer with 8A7H5 Fab, subparticle reconstruction
Descriptor: 8A7H5 Fab heavy chain, 8A7H5 Fab light chain, Capsid protein VP1
Authors:Goetschius, D.J, Hafenstein, S.L.
Deposit date:2020-09-08
Release date:2020-10-07
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Antibody escape by polyomavirus capsid mutation facilitates neurovirulence.
Elife, 9, 2020
7JW2
DownloadVisualize
BU of 7jw2 by Molmil
Crystal structure of Aedes aegypti Nibbler EXO domain
Descriptor: Exonuclease mut-7 homolog
Authors:Xie, W, Sowemimo, I, Hayashi, R, Wang, J, Brennecke, J, Ameres, S.L, Patel, D.J.
Deposit date:2020-08-24
Release date:2021-01-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Proc.Natl.Acad.Sci.USA, 117, 2020
7K7X
DownloadVisualize
BU of 7k7x by Molmil
Solution structure of the cyclotide pase A
Descriptor: Cyclotide pase A
Authors:Chan, L.Y, Pinto, M.E.F, Craik, D.J.
Deposit date:2020-09-24
Release date:2021-08-04
Method:SOLUTION NMR
Cite:Cyclotides from Brazilian Palicourea sessilis and Their Effects on Human Lymphocytes.
J.Nat.Prod., 84, 2021
7K25
DownloadVisualize
BU of 7k25 by Molmil
Murine polyomavirus hexavalent capsomer, subparticle reconstruction
Descriptor: Capsid protein VP1
Authors:Goetschius, D.J, Hafenstein, S.L.
Deposit date:2020-09-08
Release date:2020-10-07
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Antibody escape by polyomavirus capsid mutation facilitates neurovirulence.
Elife, 9, 2020
7KBH
DownloadVisualize
BU of 7kbh by Molmil
Structure of Human HDAC2 in complex with a 2-substituted benzamide inhibitor (compound 16)
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Histone deacetylase 2, ...
Authors:Klein, D.J, Liu, J.
Deposit date:2020-10-02
Release date:2020-12-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Discovery of Highly Selective and Potent HDAC3 Inhibitors Based on a 2-Substituted Benzamide Zinc Binding Group.
Acs Med.Chem.Lett., 11, 2020
7JW6
DownloadVisualize
BU of 7jw6 by Molmil
Crystal structure of Drosophila Nibbler EXO domain
Descriptor: Exonuclease mut-7 homolog
Authors:Xie, W, Sowemimo, I, Hayashi, R, Wang, J, Brennecke, J, Ameres, S.L, Patel, D.J.
Deposit date:2020-08-24
Release date:2021-01-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Proc.Natl.Acad.Sci.USA, 117, 2020
7JNN
DownloadVisualize
BU of 7jnn by Molmil
NMR Solution Structure of plant defensin SlD26
Descriptor: SlD26 plant defensin
Authors:Harvey, P.J, Craik, D.J.
Deposit date:2020-08-04
Release date:2020-09-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Histidine-Rich Defensins from the Solanaceae and Brasicaceae Are Antifungal and Metal Binding Proteins.
J Fungi (Basel), 6, 2020
7JN6
DownloadVisualize
BU of 7jn6 by Molmil
NMR Solution Structure of plant defensin AtD90
Descriptor: Defensin-like protein 204
Authors:Harvey, P.J, Craik, D.J.
Deposit date:2020-08-03
Release date:2020-09-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Histidine-Rich Defensins from the Solanaceae and Brasicaceae Are Antifungal and Metal Binding Proteins.
J Fungi (Basel), 6, 2020
7JW3
DownloadVisualize
BU of 7jw3 by Molmil
Crystal structure of Aedes aegypti Nibbler NTD domain
Descriptor: Exonuclease mut-7 homolog
Authors:Xie, W, Sowemimo, I, Hayashi, R, Wang, J, Brennecke, J, Ameres, S.L, Patel, D.J.
Deposit date:2020-08-24
Release date:2021-01-20
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Proc.Natl.Acad.Sci.USA, 117, 2020
7KBG
DownloadVisualize
BU of 7kbg by Molmil
Structure of Human HDAC2 in complex with a 2-substituted benzamide inhibitor (compound 20)
Descriptor: 2,5-dichloro-1H-benzimidazole, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Klein, D.J, Liu, J.
Deposit date:2020-10-02
Release date:2020-12-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Discovery of Highly Selective and Potent HDAC3 Inhibitors Based on a 2-Substituted Benzamide Zinc Binding Group.
Acs Med.Chem.Lett., 11, 2020
7K24
DownloadVisualize
BU of 7k24 by Molmil
Murine polyomavirus pentavalent capsomer, subparticle reconstruction
Descriptor: Capsid protein VP1
Authors:Goetschius, D.J, Hafenstein, S.L.
Deposit date:2020-09-08
Release date:2020-10-07
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Antibody escape by polyomavirus capsid mutation facilitates neurovirulence.
Elife, 9, 2020
7JS8
DownloadVisualize
BU of 7js8 by Molmil
STRUCTURE OF HUMAN HDAC2 IN COMPLEX WITH AN ETHYL KETONE INHIBITOR CONTAINING A SPIRO-BICYCLIC GROUP (COMPOUND 22)
Descriptor: (1S)-N-{(1S)-7,7-dihydroxy-1-[4-(2-methylquinolin-6-yl)-1H-imidazol-2-yl]nonyl}-6-methyl-6-azaspiro[2.5]octane-1-carboxamide, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Klein, D.J, Yu, W.
Deposit date:2020-08-14
Release date:2021-08-11
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.634 Å)
Cite:Discovery of Ethyl Ketone-Based Highly Selective HDACs 1, 2, 3 Inhibitors for HIV Latency Reactivation with Minimum Cellular Potency Serum Shift and Reduced hERG Activity.
J.Med.Chem., 64, 2021

222926

数据于2024-07-24公开中

PDB statisticsPDBj update infoContact PDBjnumon