Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 2998 件

3GWX
DownloadVisualize
BU of 3gwx by Molmil
MOLECULAR RECOGNITION OF FATTY ACIDS BY PEROXISOME PROLIFERATOR-ACTIVATED RECEPTORS
分子名称: 5,8,11,14,17-EICOSAPENTAENOIC ACID, PROTEIN (PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR (PPAR-DELTA))
著者Xu, H.E, Lambert, M.H, Montana, V.G, Parks, D.J, Blanchard, S.G, Brown, P.J, Sternbach, D.D, Lehmann, J.M, Wisely, G.B, Willson, T.M, Kliewer, S.A, Milburn, M.V.
登録日1999-04-26
公開日2000-04-26
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular recognition of fatty acids by peroxisome proliferator-activated receptors.
Mol.Cell, 3, 1999
3VBH
DownloadVisualize
BU of 3vbh by Molmil
Crystal structure of formaldehyde treated human enterovirus 71 (space group R32)
分子名称: CHLORIDE ION, Genome Polyprotein, capsid protein VP1, ...
著者Wang, X, Peng, W, Ren, J, Hu, Z, Xu, J, Lou, Z, Li, X, Yin, W, Shen, X, Porta, C, Walter, T.S, Evans, G, Axford, D, Owen, R, Rowlands, D.J, Wang, J, Stuart, D.I, Fry, E.E, Rao, Z.
登録日2012-01-02
公開日2012-02-29
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A sensor-adaptor mechanism for enterovirus uncoating from structures of EV71.
Nat.Struct.Mol.Biol., 19, 2012
3U2P
DownloadVisualize
BU of 3u2p by Molmil
Crystal structure of N-terminal three extracellular domains of ErbB4/Her4
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Receptor tyrosine-protein kinase erbB-4
著者Liu, P, Bouyain, S, Elgenbrot, C, Leahy, D.J.
登録日2011-10-04
公開日2011-11-09
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献The ErbB4 extracellular region retains a tethered-like conformation in the absence of the tether.
Protein Sci., 21, 2012
3IQQ
DownloadVisualize
BU of 3iqq by Molmil
X-ray structure of bovine TRTK12-Ca(2+)-S100B
分子名称: CALCIUM ION, Protein S100-B, TRTK12 peptide, ...
著者Charpentier, T.H, Weber, D.J, Toth, E.A.
登録日2009-08-20
公開日2010-02-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献The Effects of CapZ Peptide (TRTK-12) Binding to S100B-Ca(2+) as Examined by NMR and X-ray Crystallography
J.Mol.Biol., 396, 2010
3TCH
DownloadVisualize
BU of 3tch by Molmil
Crystal structure of E. coli OppA in an open conformation
分子名称: Periplasmic oligopeptide-binding protein
著者Klepsch, M.M, Kovermann, M, Low, C, Balbach, J, de Gier, J.W, Slotboom, D.J, Berntsson, R.P.-A.
登録日2011-08-09
公開日2011-10-12
最終更新日2012-01-11
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Escherichia coli peptide binding protein OppA has a preference for positively charged peptides.
J.Mol.Biol., 414, 2011
3SOX
DownloadVisualize
BU of 3sox by Molmil
Structure of UHRF1 PHD finger in the free form
分子名称: E3 ubiquitin-protein ligase UHRF1, ZINC ION
著者Rajakumara, E, Patel, D.J.
登録日2011-06-30
公開日2011-08-03
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.6501 Å)
主引用文献PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression.
Mol.Cell, 43, 2011
3IEP
DownloadVisualize
BU of 3iep by Molmil
Firefly luciferase apo structure (P41 form)
分子名称: Luciferin 4-monooxygenase
著者Lovell, S, Battaile, K.P, Auld, D.S, Thorne, N, Lea, W.A, Maloney, D.J, Shen, M, Raj, G, Thomas, C.J, Simeonov, A, Hanzlik, R.P, Inglese, J.
登録日2009-07-23
公開日2010-02-16
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Molecular basis for the high-affinity binding and stabilization of firefly luciferase by PTC124.
Proc.Natl.Acad.Sci.USA, 107, 2010
3HJF
DownloadVisualize
BU of 3hjf by Molmil
Crystal structure of T. thermophilus Argonaute E546 mutant protein complexed with DNA guide strand and 15-nt RNA target strand
分子名称: 5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3', 5'-R(*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*G)-3', Argonaute, ...
著者Wang, Y, Li, H, Sheng, G, Patel, D.J.
登録日2009-05-21
公開日2009-10-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.056 Å)
主引用文献Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.
Nature, 461, 2009
3HF3
DownloadVisualize
BU of 3hf3 by Molmil
Old Yellow Enzyme from Thermus scotoductus SA-01
分子名称: Chromate reductase, FLAVIN MONONUCLEOTIDE, SULFATE ION
著者Opperman, D.J, Sewell, B.T, Litthauer, D, Isupov, M.N, Littlechild, J.A, van Heerden, E.
登録日2009-05-11
公開日2010-02-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of a thermostable old yellow enzyme from Thermus scotoductus SA-01
Biochem.Biophys.Res.Commun., 393, 2010
3TOS
DownloadVisualize
BU of 3tos by Molmil
Crystal Structure of CalS11, Calicheamicin Methyltransferase
分子名称: 1,2-ETHANEDIOL, CalS11, GLUTAMIC ACID, ...
著者Chang, A, Aceti, D.J, Beebe, E.T, Makino, S.-I, Wrobel, R.L, Bingman, C.A, Thorson, J.S, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
登録日2011-09-06
公開日2011-10-05
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal Structure of CalS11, Calicheamicin methyltransferase
To be Published
3FC6
DownloadVisualize
BU of 3fc6 by Molmil
hRXRalpha & mLXRalpha with an indole Pharmacophore, SB786875
分子名称: Nr1h3 protein, RETINOIC ACID, Retinoic acid receptor RXR-alpha, ...
著者Washburn, D.G, Hoang, T.H, Campobasso, N, Smallwood, A, Parks, D.J, Webb, C.L, Frank, K, Nord, M, Duraiswami, C, Evans, C, Jaye, M, Thompson, S.K.
登録日2008-11-21
公開日2009-02-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.063 Å)
主引用文献Synthesis and SAR of potent LXR agonists containing an indole pharmacophore.
Bioorg.Med.Chem.Lett., 19, 2009
3IQO
DownloadVisualize
BU of 3iqo by Molmil
1.5 angstrom X-ray structure of bovine Ca(2+)-S100B
分子名称: CALCIUM ION, Protein S100-B
著者Charpentier, T.H, Weber, D.J, Toth, E.A.
登録日2009-08-20
公開日2010-02-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The Effects of CapZ Peptide (TRTK-12) Binding to S100B-Ca(2+) as Examined by NMR and X-ray Crystallography
J.Mol.Biol., 396, 2010
3IVV
DownloadVisualize
BU of 3ivv by Molmil
Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATH-PucSBC1_pep1
分子名称: PucSBC1, Speckle-type POZ protein
著者Schulman, B.A, Miller, D.J, Calabrese, M.F, Seyedin, S.
登録日2009-09-01
公開日2009-10-20
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases.
Mol.Cell, 36, 2009
3UIJ
DownloadVisualize
BU of 3uij by Molmil
Crystal structure of human Survivin K62Y/H80W mutant in complex with Smac/DIABLO(1-15) peptide
分子名称: Baculoviral IAP repeat-containing protein 5, Diablo homolog, mitochondrial, ...
著者Du, J, Patel, D.J.
登録日2011-11-04
公開日2012-02-01
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.705 Å)
主引用文献Structural Basis for Recognition of H3T3ph and Smac/DIABLO N-terminal Peptides by Human Survivin.
Structure, 20, 2012
3UIH
DownloadVisualize
BU of 3uih by Molmil
crystal structure of human Survivin in complex with Smac/DIABLO(1-15) peptide
分子名称: Baculoviral IAP repeat-containing protein 5, Diablo homolog, mitochondrial, ...
著者Du, J, Patel, D.J.
登録日2011-11-04
公開日2012-02-01
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural Basis for Recognition of H3T3ph and Smac/DIABLO N-terminal Peptides by Human Survivin.
Structure, 20, 2012
3IVB
DownloadVisualize
BU of 3ivb by Molmil
Structures of SPOP-Substrate Complexes: Insights into Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATH-MacroH2ASBCpep1
分子名称: CHLORIDE ION, Core histone macro-H2A.1, Speckle-type POZ protein, ...
著者Schulman, B.A, Miller, D.J, Calabrese, M.F, Seyedin, S.
登録日2009-08-31
公開日2009-10-20
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structure 9
To be Published
3IYC
DownloadVisualize
BU of 3iyc by Molmil
Poliovirus late RNA-release intermediate
分子名称: Capsid protein VP1, Capsid protein VP2, Genome polyprotein, ...
著者Levy, H.C, Bostina, M, Filman, D.J, Hogle, J.M.
登録日2009-07-21
公開日2010-03-16
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (10 Å)
主引用文献Catching a virus in the act of RNA release: a novel poliovirus uncoating intermediate characterized by cryo-electron microscopy.
J.Virol., 84, 2010
3K8E
DownloadVisualize
BU of 3k8e by Molmil
Crystal structure of E. coli lipopolysaccharide specific CMP-KDO synthetase
分子名称: 3-deoxy-manno-octulosonate cytidylyltransferase
著者Heyes, D.J, Levy, C.W, Lafite, P, Scrutton, N.S, Leys, D.
登録日2009-10-14
公開日2009-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Structure-based mechanism of CMP-2-keto-3-deoxymanno-octulonic acid synthetase: convergent evolution of a sugar-activating enzyme with DNA/RNA polymerases
J.Biol.Chem., 284, 2009
3J41
DownloadVisualize
BU of 3j41 by Molmil
Pseudo-atomic model of the Aquaporin-0/Calmodulin complex derived from electron microscopy
分子名称: CALCIUM ION, Calmodulin, Lens fiber major intrinsic protein
著者Reichow, S.L, Clemens, D.M, Freites, J.A, Nemeth-Cahalan, K.L, Heyden, M, Tobias, D.J, Hall, J.E, Gonen, T.
登録日2013-05-31
公開日2013-07-31
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (25 Å)
主引用文献Allosteric mechanism of water-channel gating by Ca(2+)-calmodulin.
Nat.Struct.Mol.Biol., 20, 2013
3VBS
DownloadVisualize
BU of 3vbs by Molmil
Crystal structure of human Enterovirus 71
分子名称: Genome Polyprotein, capsid protein VP1, capsid protein VP2, ...
著者Wang, X, Peng, W, Ren, J, Hu, Z, Xu, J, Lou, Z, Li, X, Yin, W, Shen, X, Porta, C, Walter, T.S, Evans, G, Axford, D, Owen, R, Rowlands, D.J, Wang, J, Stuart, D.I, Fry, E.E, Rao, Z.
登録日2012-01-02
公開日2012-02-29
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A sensor-adaptor mechanism for enterovirus uncoating from structures of EV71.
Nat.Struct.Mol.Biol., 19, 2012
6OYT
DownloadVisualize
BU of 6oyt by Molmil
ASK1 kinase domain in complex with GS-4997
分子名称: 5-(4-cyclopropyl-1H-imidazol-1-yl)-2-fluoro-4-methyl-N-{6-[4-(propan-2-yl)-4H-1,2,4-triazol-3-yl]pyridin-2-yl}benzamide, ACETATE ION, Mitogen-activated protein kinase kinase kinase 5
著者Marcotte, D.J.
登録日2019-05-15
公開日2019-11-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.824 Å)
主引用文献Rational Design and Optimization of a Novel Class of Macrocyclic Apoptosis Signal-Regulating Kinase 1 Inhibitors.
J.Med.Chem., 62, 2019
4TTO
DownloadVisualize
BU of 4tto by Molmil
Quasi-racemic structure of [V25A] kalata B1
分子名称: D-kalata B1, Kalata-B1
著者Wang, C.K, King, G.J, Craik, D.J.
登録日2014-06-22
公開日2014-09-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3002 Å)
主引用文献Racemic and Quasi-Racemic X-ray Structures of Cyclic Disulfide-Rich Peptide Drug Scaffolds.
Angew.Chem.Int.Ed.Engl., 53, 2014
7BNO
DownloadVisualize
BU of 7bno by Molmil
Open conformation of D614G SARS-CoV-2 spike with 2 Erect RBDs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Benton, D.J, Wrobel, A.G, Rosenthal, P.B, Gamblin, S.J.
登録日2021-01-22
公開日2021-02-03
最終更新日2021-03-10
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献The effect of the D614G substitution on the structure of the spike glycoprotein of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 118, 2021
6PCH
DownloadVisualize
BU of 6pch by Molmil
E. coli 50S ribosome bound to compound 21
分子名称: (3R,4R,5E,10E,12E,14S,26aR)-14-hydroxy-12-methyl-3-(propan-2-yl)-4-(prop-2-en-1-yl)-8,9,14,15,24,25,26,26a-octahydro-1H,3H,22H-21,18-(azeno)pyrrolo[2,1-c][1,8,4,19]dioxadiazacyclotetracosine-1,7,16,22(4H,17H)-tetrone, 23S ribosomal RNA, 50S ribosomal protein L13, ...
著者Pellegrino, J, Lee, D.J, Fraser, J.S, Seiple, I.B.
登録日2019-06-17
公開日2020-06-17
最終更新日2020-10-07
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Synthetic group A streptogramin antibiotics that overcome Vat resistance.
Nature, 586, 2020
6PF9
DownloadVisualize
BU of 6pf9 by Molmil
Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)phenyl)acetic acid.
分子名称: 5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE, Bifunctional dihydrofolate reductase-thymidylate synthase, METHOTREXATE, ...
著者Czyzyk, D.J, Valhondo, M, Jorgensen, W.L, Anderson, K.S.
登録日2019-06-21
公開日2019-10-02
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Structure activity relationship towards design of cryptosporidium specific thymidylate synthase inhibitors.
Eur.J.Med.Chem., 183, 2019

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon