Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 22600 results

3G3V
DownloadVisualize
BU of 3g3v by Molmil
Crystal structure of spin labeled T4 Lysozyme (V131R1) at 291 K
Descriptor: 2-HYDROXYETHYL DISULFIDE, AZIDE ION, CHLORIDE ION, ...
Authors:Fleissner, M.R, Cascio, D, Hubbell, W.L.
Deposit date:2009-02-02
Release date:2009-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural origin of weakly ordered nitroxide motion in spin-labeled proteins.
Protein Sci., 18, 2009
5EJL
DownloadVisualize
BU of 5ejl by Molmil
MrkH, A novel c-di-GMP dependence transcription regulatory factor.
Descriptor: 1,2-ETHANEDIOL, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Klebsiella pneumoniae genome assembly NOVST, ...
Authors:Wang, F, Zhu, D, Gu, L.
Deposit date:2015-11-02
Release date:2016-10-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The PilZ domain of MrkH represents a novel DNA binding motif
Protein Cell, 7, 2016
6SW8
DownloadVisualize
BU of 6sw8 by Molmil
Crystal structure of the NS1 (H7N1) RNA-binding domain
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Non-structural protein 1
Authors:Coste, F, Wacquiez, A, Marc, D, Castaing, B.
Deposit date:2019-09-20
Release date:2020-10-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.933 Å)
Cite:Structure and Sequence Determinants Governing the Interactions of RNAs with Influenza A Virus Non-Structural Protein NS1.
Viruses, 12, 2020
5ELC
DownloadVisualize
BU of 5elc by Molmil
Cholera toxin El Tor B-pentamer in complex with Lewis-y
Descriptor: BICINE, CALCIUM ION, Cholera enterotoxin subunit B, ...
Authors:Heggelund, J.E, Burschowsky, D, Krengel, U.
Deposit date:2015-11-04
Release date:2016-03-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-Resolution Crystal Structures Elucidate the Molecular Basis of Cholera Blood Group Dependence.
Plos Pathog., 12, 2016
1URQ
DownloadVisualize
BU of 1urq by Molmil
Crystal structure of neuronal Q-SNAREs in complex with R-SNARE motif of Tomosyn
Descriptor: M-TOMOSYN ISOFORM, SYNAPTOSOMAL-ASSOCIATED PROTEIN 25, SYNTAXIN 1A
Authors:Pobbati, A, Razeto, A, Becker, S, Fasshauer, D.
Deposit date:2003-10-31
Release date:2004-08-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for the Inhibitory Role of Tomosyn in Exocytosis
J.Biol.Chem., 279, 2004
5D4L
DownloadVisualize
BU of 5d4l by Molmil
Structure of the apo form of CPII from Thiomonas intermedia K12, a nitrogen regulatory PII-like protein
Descriptor: Nitrogen regulatory protein P-II
Authors:Wheatley, N.M, Ngo, J, Cascio, D, Sawaya, M.R, Yeates, T.O.
Deposit date:2015-08-08
Release date:2016-09-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A PII-Like Protein Regulated by Bicarbonate: Structural and Biochemical Studies of the Carboxysome-Associated CPII Protein.
J.Mol.Biol., 428, 2016
1UXE
DownloadVisualize
BU of 1uxe by Molmil
ADENOVIRUS AD37 FIBRE HEAD
Descriptor: ACETATE ION, FIBER PROTEIN, ZINC ION
Authors:Burmeister, W.P, Guilligay, D, Cusack, S, Wadell, G, Arnberg, N.
Deposit date:2004-02-24
Release date:2004-07-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Species D Adenovirus Fiber Knobs and Their Sialic Acid Binding Sites
J.Virol., 78, 2004
3M2N
DownloadVisualize
BU of 3m2n by Molmil
Crystal structure of human carbonic anhydrase isozyme II with 4-{2-[N-(6-chloro-5-nitropyrimidin-4-yl)amino]ethyl}benzenesulfonamide
Descriptor: 4-{2-[(6-chloro-5-nitropyrimidin-4-yl)amino]ethyl}benzenesulfonamide, BICINE, Carbonic anhydrase 2, ...
Authors:Grazulis, S, Manakova, E, Golovenko, D.
Deposit date:2010-03-08
Release date:2011-02-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Design of [(2-pyrimidinylthio)acetyl]benzenesulfonamides as inhibitors of human carbonic anhydrases.
Eur.J.Med.Chem., 51, 2012
1UTH
DownloadVisualize
BU of 1uth by Molmil
DntR from Burkholderia sp. strain DNT in complex with Thiocyanate
Descriptor: LYSR-TYPE REGULATORY PROTEIN, THIOCYANATE ION
Authors:Smirnova, I.A, Dian, C, Leonard, G.A, McSweeney, S, Birse, D, Brzezinski, P.
Deposit date:2003-12-09
Release date:2004-07-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Development of a Bacterial Biosensor for Nitrotoluenes: The Crystal Structure of the Transcriptional Regulator Dntr
J.Mol.Biol., 340, 2004
5D6S
DownloadVisualize
BU of 5d6s by Molmil
Structure of epoxyqueuosine reductase from Streptococcus thermophilus.
Descriptor: COBALAMIN, Epoxyqueuosine reductase, IRON/SULFUR CLUSTER
Authors:Payne, K.A.P, Fisher, K, Dunstan, M.S, Sjuts, H, Leys, D.
Deposit date:2015-08-12
Release date:2015-09-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Epoxyqueuosine Reductase Structure Suggests a Mechanism for Cobalamin-dependent tRNA Modification.
J.Biol.Chem., 290, 2015
1UZ2
DownloadVisualize
BU of 1uz2 by Molmil
The Cys121Ser Mutant of Beta-Lactoglobulin
Descriptor: BETA-LACTOGLOBULIN
Authors:McNae, I, Jayat, D, Haertle, T, Holt, C, Sawyer, L.
Deposit date:2004-03-03
Release date:2004-05-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A recombinant C121S mutant of bovine beta-lactoglobulin is more susceptible to peptic digestion and to denaturation by reducing agents and heating.
Biochemistry, 43, 2004
1UUZ
DownloadVisualize
BU of 1uuz by Molmil
IVY:A NEW FAMILY OF PROTEIN
Descriptor: INHIBITOR OF VERTEBRATE LYSOZYME, LYSOZYME C
Authors:Abergel, C, Lembo, F, Byrne, D, Maza, C, Claverie, J.M.
Deposit date:2004-01-12
Release date:2004-01-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and Evolution of the Ivy Protein Family, Unexpected Lysozyme Inhibitors in Gram-Negative Bacteria.
Proc.Natl.Acad.Sci.USA, 104, 2007
5D8I
DownloadVisualize
BU of 5d8i by Molmil
Engineering the Species-Specificity of an Inhibitory Antibody Targeting a Modulator of Tumor Stroma
Descriptor: Sulfhydryl oxidase 1
Authors:Grossman, I, Fass, D.
Deposit date:2015-08-17
Release date:2016-02-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Overcoming a species-specificity barrier in development of an inhibitory antibody targeting a modulator of tumor stroma.
Protein Eng.Des.Sel., 29, 2016
1UPR
DownloadVisualize
BU of 1upr by Molmil
Crystal structure of the PEPP1 pleckstrin homology domain in complex with Inositol 1,3,4,5-tetrakisphosphate
Descriptor: INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE, PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY A MEMBER 4
Authors:Milburn, C.C, Komander, D, Deak, M, Alessi, D.R, Van Aalten, D.M.F.
Deposit date:2003-10-10
Release date:2004-10-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal Structure of the Pleckstrin Homology Domain of Pepp1
To be Published
1URH
DownloadVisualize
BU of 1urh by Molmil
The "Rhodanese" fold and catalytic mechanism of 3-mercaptopyruvate sulfotransferases: Crystal structure of SseA from Escherichia coli
Descriptor: 3-MERCAPTOPYRUVATE SULFURTRANSFERASE, SULFITE ION
Authors:Spallarossa, A, Forlani, F, Carpen, A, Armirotti, A, Pagani, S, Bolognesi, M, Bordo, D.
Deposit date:2003-10-30
Release date:2003-12-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The "Rhodanese" Fold and Catalytic Mechanism of 3-Mercaptopyruvate Sulfurtransferases: Crystal Structure of Ssea from Escherichia Coli
J.Mol.Biol., 335, 2004
3DLQ
DownloadVisualize
BU of 3dlq by Molmil
Crystal structure of the IL-22/IL-22R1 complex
Descriptor: Interleukin-22, Interleukin-22 receptor subunit alpha-1
Authors:Bleicher, L, de Moura, P.R, Watanabe, L, Colau, D, Dumoutier, L, Renauld, J.-C, Polikarpov, I.
Deposit date:2008-06-28
Release date:2008-08-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the IL-22/IL-22R1 complex and its implications for the IL-22 signaling mechanism
Febs Lett., 582, 2008
5D9C
DownloadVisualize
BU of 5d9c by Molmil
Luciferin-regenerating enzyme solved by SIRAS using XFEL (refined against Hg derivative data)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION, ...
Authors:Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
Deposit date:2015-08-18
Release date:2015-09-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Sci Rep, 5, 2015
5DAZ
DownloadVisualize
BU of 5daz by Molmil
Crystal structure of Scabin, a mono-ADP-ribosyltransferase from Streptomyces scabies
Descriptor: Scabin
Authors:Dutta, D, Lanoue, J, Merrill, A.R.
Deposit date:2015-08-20
Release date:2016-03-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Scabin, a Novel DNA-acting ADP-ribosyltransferase from Streptomyces scabies.
J.Biol.Chem., 291, 2016
1UVR
DownloadVisualize
BU of 1uvr by Molmil
Structure of human PDK1 kinase domain in complex with BIM-8
Descriptor: 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1, 3-[1-(3-AMINOPROPYL)-1H-INDOL-3-YL]-4-(1-METHYL-1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE, GLYCEROL, ...
Authors:Komander, D, Garrido-Franco, M, Kular, G.S, Schuttelkopf, A.W, Deak, M, Prakash, K.R, Bain, J, Elliot, M, Kozikowski, A.P, Alessi, D.R, Van Aalten, D.M.F.
Deposit date:2004-01-22
Release date:2004-03-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Interactions of Ly333531 and Other Bisindolyl Maleimide Inhibitors with Pdk1
Structure, 12, 2004
5DH8
DownloadVisualize
BU of 5dh8 by Molmil
Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction- G12A mutant in Zn2+
Descriptor: 5'-R(*GP*GP*GP*CP*GP*U)-D(P*C)-R(P*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3', RNA (48-MER), ZINC ION
Authors:Mir, A, Chen, J, Neau, D, Golden, B.L.
Deposit date:2015-08-29
Release date:2015-10-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.297 Å)
Cite:Two Divalent Metal Ions and Conformational Changes Play Roles in the Hammerhead Ribozyme Cleavage Reaction.
Biochemistry, 54, 2015
5DHH
DownloadVisualize
BU of 5dhh by Molmil
The crystal structure of nociceptin/orphanin FQ peptide receptor (NOP) in complex with SB-612111 (PSI Community Target)
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (5S,7S)-7-{[4-(2,6-dichlorophenyl)piperidin-1-yl]methyl}-1-methyl-6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-ol, OLEIC ACID, ...
Authors:Miller, R.L, Thompson, A.A, Trapella, C, Guerrini, R, Malfacini, D, Patel, N, Han, G.W, Cherezov, V, Calo, G, Katritch, V, Stevens, R.C, GPCR Network (GPCR)
Deposit date:2015-08-31
Release date:2015-10-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:The Importance of Ligand-Receptor Conformational Pairs in Stabilization: Spotlight on the N/OFQ G Protein-Coupled Receptor.
Structure, 23, 2015
5E3M
DownloadVisualize
BU of 5e3m by Molmil
Crystal structure of Fis bound to 27bp DNA F35 (AAATTAGTTTGAATCTCGAGCTAATTT)
Descriptor: DNA (27-MER), DNA-binding protein Fis
Authors:Stella, S, Hancock, S.P, Cascio, D, Johnson, R.C.
Deposit date:2015-10-03
Release date:2016-03-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.886 Å)
Cite:DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis.
Plos One, 11, 2016
1UT0
DownloadVisualize
BU of 1ut0 by Molmil
CRYSTAL STRUCTURE OF CYTOGLOBIN: THE FOURTH GLOBIN TYPE DISCOVERED IN MAN DISPLAYS HEME HEXA-COORDINATION
Descriptor: CYTOGLOBIN, HEXACYANOFERRATE(3-), PROTOPORPHYRIN IX CONTAINING FE
Authors:De Sanctis, D, Dewilde, S, Pesce, A, Moens, L, Ascenzi, P, Hankeln, T, Burmester, T, Bolognesi, M.
Deposit date:2003-12-02
Release date:2004-06-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Cytoglobin: The Fourth Globin Type Discovered in Man Displays Heme Hexa-Coordination
J.Mol.Biol., 336, 2004
5E08
DownloadVisualize
BU of 5e08 by Molmil
Specific Recognition of a Single-stranded RNA Sequence by an Engineered Synthetic Antibody Fragment
Descriptor: Fab Heavy Chain, Fab Light Chain, RNA
Authors:Huang, H, Qin, D, Li, N, Shao, Y, Staley, J.P, Kossiakoff, A.A, Koide, S, Piccirilli, J.A.
Deposit date:2015-09-28
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Specific Recognition of a Single-Stranded RNA Sequence by a Synthetic Antibody Fragment.
J.Mol.Biol., 428, 2016
5E3B
DownloadVisualize
BU of 5e3b by Molmil
Structure of macrodomain protein from Streptomyces coelicolor
Descriptor: 1,2-ETHANEDIOL, Macrodomain protein, SODIUM ION
Authors:Lalic, J, Posavec Marjanovic, M, Perina, D, Sabljic, I, Zaja, R, Plese, B, Imesek, M, Bucca, G, Ahel, M, Cetkovic, H, Luic, M, Mikoc, A, Ahel, I.
Deposit date:2015-10-02
Release date:2016-09-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Disruption of Macrodomain Protein SCO6735 Increases Antibiotic Production in Streptomyces coelicolor.
J.Biol.Chem., 291, 2016

226262

數據於2024-10-16公開中

PDB statisticsPDBj update infoContact PDBjnumon