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PDB: 53833 results

1D17
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BU of 1d17 by Molmil
DNA-NOGALAMYCIN INTERACTIONS
Descriptor: DNA (5'-D(*(5CM)P*GP*TP*AP*(5CM)P*G)-3'), NOGALAMYCIN
Authors:Egli, M, Williams, L.D, Frederick, C.A, Rich, A.
Deposit date:1990-08-08
Release date:1991-07-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:DNA-nogalamycin interactions.
Biochemistry, 30, 1991
6E81
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BU of 6e81 by Molmil
Crystal structure of the Corn aptamer in complex with ThT
Descriptor: 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium, POTASSIUM ION, RNA (36-MER)
Authors:Sjekloca, L, Ferre-D'Amare, A.R.
Deposit date:2018-07-27
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.721 Å)
Cite:Binding between G Quadruplexes at the Homodimer Interface of the Corn RNA Aptamer Strongly Activates Thioflavin T Fluorescence.
Cell Chem Biol, 26, 2019
4LSF
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BU of 4lsf by Molmil
Ion selectivity of OmpF soaked in 0.1M KBr
Descriptor: BROMIDE ION, GLYCEROL, Outer membrane protein F
Authors:Balasundaresan, D, Blachowicz, L, Roux, B.
Deposit date:2013-07-22
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A structural study of ion permeation in OmpF porin from anomalous X-ray diffraction and molecular dynamics simulations.
J.Am.Chem.Soc., 135, 2013
1D15
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TERNARY INTERACTIONS OF SPERMINE WITH DNA: 4'-EPIADRIAMYCIN AND OTHER DNA: ANTHRACYCLINE COMPLEXES
Descriptor: 4'-EPIDOXORUBICIN, DNA (5'-D(*CP*GP*AP*TP*CP*G)-3'), SPERMINE
Authors:Williams, L.D, Frederick, C.A, Ughetto, G, Rich, A.
Deposit date:1990-07-03
Release date:1991-07-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Ternary interactions of spermine with DNA: 4'-epiadriamycin and other DNA: anthracycline complexes.
Nucleic Acids Res., 18, 1990
6EBL
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BU of 6ebl by Molmil
The voltage-activated Kv1.2-2.1 paddle chimera channel in lipid nanodiscs, cytosolic domain
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Potassium voltage-gated channel subfamily A member 2,Potassium voltage-gated channel subfamily B member 2 chimera, Voltage-gated potassium channel subunit beta-2
Authors:Matthies, D, Bae, C, Fox, T, Bartesaghi, A, Subramaniam, S, Swartz, K.J.
Deposit date:2018-08-06
Release date:2018-08-22
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Single-particle cryo-EM structure of a voltage-activated potassium channel in lipid nanodiscs.
Elife, 7, 2018
4UX9
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Crystal structure of JNK1 bound to a MKK7 docking motif
Descriptor: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 7, MITOGEN-ACTIVATED PROTEIN KINASE 8, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Kragelj, J, Palencia, A, Nanao, M.H, Maurin, D, Bouvignies, G, Blackledge, M, Ringkjobing-Jensen, M.
Deposit date:2014-08-20
Release date:2015-03-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Structure and Dynamics of the Mkk7-Jnk Signaling Complex.
Proc.Natl.Acad.Sci.USA, 112, 2015
4DB7
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Crystal structure of B. anthracis DHPS with compound 25
Descriptor: 3-(7-amino-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid, Dihydropteroate Synthase, SULFATE ION
Authors:Hammoudeh, D, Lee, R.E, White, S.W.
Deposit date:2012-01-13
Release date:2012-03-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-Based Design of Novel Pyrimido[4,5-c]pyridazine Derivatives as Dihydropteroate Synthase Inhibitors with Increased Affinity.
Chemmedchem, 7, 2012
4DCE
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Crystal structure of human anaplastic lymphoma kinase in complex with a piperidine-carboxamide inhibitor
Descriptor: (3S)-N-(4-methylbenzyl)-1-{2-[(3,4,5-trimethoxyphenyl)amino]pyrimidin-4-yl}piperidine-3-carboxamide, ALK tyrosine kinase receptor
Authors:Whittington, D.A, Epstein, L.F, Chen, H.
Deposit date:2012-01-17
Release date:2012-02-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Rapid development of piperidine carboxamides as potent and selective anaplastic lymphoma kinase inhibitors.
J.Med.Chem., 55, 2012
4V1M
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Architecture of the RNA polymerase II-Mediator core transcription initiation complex
Descriptor: 5'-D(*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP)-3', 5'-D(*CP*CP*AP*GP*GP*AP)-3', 5'-D(*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*TP*TP*TP*CP *CP*BRUP*GP*GP*TP*C)-3', ...
Authors:Plaschka, C, Lariviere, L, Wenzeck, L, Hemann, M, Tegunov, D, Petrotchenko, E.V, Borchers, C.H, Baumeister, W, Herzog, F, Villa, E, Cramer, P.
Deposit date:2014-09-29
Release date:2015-02-04
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Architecture of the RNA Polymerase II-Mediator Core Initiation Complex.
Nature, 518, 2015
4DGP
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The wild-type Src homology 2 (SH2)-domain containing protein tyrosine phosphatase-2 (SHP2)
Descriptor: Tyrosine-protein phosphatase non-receptor type 11
Authors:Yu, Z.H, Xu, J, Walls, C.D, Chen, L, Zhang, S, Wu, L, Wang, L.N, Liu, S.J, Zhang, Z.Y.
Deposit date:2012-01-26
Release date:2013-03-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and Mechanistic Insights into LEOPARD Syndrome-Associated SHP2 Mutations.
J.Biol.Chem., 288, 2013
2P58
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Structure of the Yersinia pestis Type III secretion system needle protein YscF in complex with its chaperones YscE/YscG
Descriptor: Putative type III secretion protein YscE, Putative type III secretion protein YscF, Putative type III secretion protein YscG
Authors:Sun, P, Austin, B.P, Tropea, J.E, Waugh, D.S.
Deposit date:2007-03-14
Release date:2008-03-04
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of the Yersinia pestis type III secretion system needle protein YscF in complex with its heterodimeric chaperone YscE/YscG.
J.Mol.Biol., 377, 2008
2P65
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BU of 2p65 by Molmil
Crystal Structure of the first nucleotide binding domain of chaperone ClpB1, putative, (Pv089580) from Plasmodium Vivax
Descriptor: Hypothetical protein PF08_0063
Authors:Wernimont, A.K, Lew, J, Kozieradzki, I, Lin, Y.H, Hassanali, A, Zhao, Y, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Sundstrom, M, Bochkarev, A, Hui, R, Artz, J.D, Structural Genomics Consortium (SGC)
Deposit date:2007-03-16
Release date:2007-04-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the first nucleotide binding domain of chaperone ClpB1, putative, (Pv089580) from Plasmodium Vivax
To be Published
5XXA
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BU of 5xxa by Molmil
beta-1,4-mannanase-SeMet-RmMan134A
Descriptor: endo-1,4-beta-mannanase
Authors:Jiang, Z.Q, You, X, Yang, D, Huang, P.
Deposit date:2017-07-03
Release date:2018-07-25
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structure of endo-1,4-beta-mannanase at 1.76 Angstroms resolution.
To Be Published
4DP7
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BU of 4dp7 by Molmil
The 1.08 Angstrom crystal structure of oxidized (CuII) poplar plastocyanin A at pH 4.0
Descriptor: COPPER (II) ION, Plastocyanin A, chloroplastic, ...
Authors:Kachalova, G.S, Shosheva, A.H, Bourenkov, G.P, Donchev, A.A, Dimitrov, M.I, Bartunik, H.D.
Deposit date:2012-02-13
Release date:2013-02-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Structural comparison of the poplar plastocyanin isoforms PCa and PCb sheds new light on the role of the copper site geometry in interactions with redox partners in oxygenic photosynthesis.
J.Inorg.Biochem., 115, 2012
2ONW
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BU of 2onw by Molmil
Structure of SSTSSA, a fibril forming peptide from Bovine Pancreatic Ribonuclease (RNase A, residues 15-20)
Descriptor: fibril forming peptide from Bovine Pancreatic Ribonuclease (RNase A)
Authors:Sambashivan, S, Sawaya, M.R, Eisenberg, D.
Deposit date:2007-01-24
Release date:2007-02-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Atomic structures of amyloid cross-beta spines reveal varied steric zippers.
Nature, 447, 2007
3NWT
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BU of 3nwt by Molmil
Crystal structure of the N-terminal domain of the yeast telomere-binding and telomerase regulatory protein Cdc13
Descriptor: Cell division control protein 13
Authors:Mitchell, M.T, Smith, J.S, Mason, M, Harper, S, Speicher, D.W, Johnson, F.B, Skordalakes, E.
Deposit date:2010-07-10
Release date:2010-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Cdc13 N-terminal dimerization, DNA binding, and telomere length regulation.
Mol.Cell.Biol., 30, 2010
4DU2
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BU of 4du2 by Molmil
cytochrome P450 BM3h-B7 MRI sensor bound to dopamine
Descriptor: L-DOPAMINE, PROTOPORPHYRIN IX CONTAINING FE, cytochrome P450 BM3 variant B7
Authors:Brustad, E.M, Lelyveld, V.S, Snow, C.D, Crook, N, Martinez, F.M, Scholl, T.J, Jasanoff, A, Arnold, F.H.
Deposit date:2012-02-21
Release date:2012-06-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-guided directed evolution of highly selective p450-based magnetic resonance imaging sensors for dopamine and serotonin.
J.Mol.Biol., 422, 2012
4LYA
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BU of 4lya by Molmil
EssC (ATPases 2 and 3) from Geobacillus thermodenitrificans (SeMet)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Uncharacterized protein
Authors:Dovala, D.L, Bendebury, A, Cox, J.S, Stroud, R.M, Rosenberg, O.S.
Deposit date:2013-07-30
Release date:2015-02-04
Last modified:2016-09-21
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Substrates Control Multimerization and Activation of the Multi-Domain ATPase Motor of Type VII Secretion.
Cell(Cambridge,Mass.), 161, 2015
2P9S
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BU of 2p9s by Molmil
Structure of bovine Arp2/3 complex co-crystallized with ATP/Mg2+
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin-like protein 2, Actin-like protein 3, ...
Authors:Nolen, B.J, Pollard, T.D.
Deposit date:2007-03-26
Release date:2007-05-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Insights into the Influence of Nucleotides on Actin Family Proteins from Seven Structures of Arp2/3 Complex.
Mol.Cell, 26, 2007
4DDS
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BU of 4dds by Molmil
CTX-M-9 class A beta-lactamase complexed with compound 11
Descriptor: 3-(pyrimidin-2-yl)-N-[3-(1H-tetrazol-5-yl)phenyl]benzamide, Beta-lactamase, DIMETHYL SULFOXIDE
Authors:Nichols, D.A, Chen, Y.
Deposit date:2012-01-19
Release date:2012-03-28
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structure-Based Design of Potent and Ligand-Efficient Inhibitors of CTX-M Class A Beta-Lactamase
J.Med.Chem., 55, 2012
2P9L
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Crystal Structure of bovine Arp2/3 complex
Descriptor: Actin-like protein 2, Actin-like protein 3, Actin-related protein 2/3 complex subunit 1B, ...
Authors:Nolen, B.J, Pollard, T.D.
Deposit date:2007-03-26
Release date:2007-05-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Insights into the Influence of Nucleotides on Actin Family Proteins from Seven Structures of Arp2/3 Complex.
Mol.Cell, 26, 2007
4DJK
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Structure of glutamate-GABA antiporter GadC
Descriptor: Probable glutamate/gamma-aminobutyrate antiporter
Authors:Ma, D, Lu, P.L, Yan, C.Y, Fan, C, Yin, P, Wang, J.W, Shi, Y.G.
Deposit date:2012-02-02
Release date:2012-03-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.097 Å)
Cite:Structure and mechanism of a glutamate-GABA antiporter
Nature, 483, 2012
4DTZ
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BU of 4dtz by Molmil
cytochrome P450 BM3h-8C8 MRI sensor bound to dopamine
Descriptor: L-DOPAMINE, PROTOPORPHYRIN IX CONTAINING FE, cytochrome P450 BM3 variant 8C8
Authors:Brustad, E.M, Lelyveld, V.S, Snow, C.D, Crook, N, Martinez, F.M, Scholl, T.J, Jasanoff, A, Arnold, F.H.
Deposit date:2012-02-21
Release date:2012-06-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure-guided directed evolution of highly selective p450-based magnetic resonance imaging sensors for dopamine and serotonin.
J.Mol.Biol., 422, 2012
4DUH
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BU of 4duh by Molmil
Crystal structure of 24 kDa domain of E. coli DNA gyrase B in complex with small molecule inhibitor
Descriptor: 4-{[4'-methyl-2'-(propanoylamino)-4,5'-bi-1,3-thiazol-2-yl]amino}benzoic acid, DNA gyrase subunit B
Authors:Brvar, M, Renko, M, Perdih, A, Solmajer, T, Turk, D.
Deposit date:2012-02-22
Release date:2012-08-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-based discovery of substituted 4,5'-bithiazoles as novel DNA gyrase inhibitors.
J.Med.Chem., 55, 2012
2OU9
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Structure of Spin-labeled T4 Lysozyme Mutant T115R1/R119A
Descriptor: Lysozyme, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate
Authors:Guo, Z, Cascio, D, Hideg, K, Hubbell, W.L.
Deposit date:2007-02-09
Release date:2007-06-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural determinants of nitroxide motion in spin-labeled proteins: Tertiary contact and solvent-inaccessible sites in helix G of T4 lysozyme.
Protein Sci., 16, 2007

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