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PDB: 53266 results

8ZFT
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Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with T0070907 and SR1664
Descriptor: 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, 4'-[(2,3-dimethyl-5-{[(1S)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid, Peroxisome proliferator-activated receptor gamma
Authors:Shang, J, Kojetin, D.J.
Deposit date:2024-05-08
Release date:2024-08-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma.
Elife, 2024
8XP5
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BU of 8xp5 by Molmil
The Crystal Structure of p53/BCL-xL fusion complex from Biortus.
Descriptor: Bcl-2-like protein 1,Cellular tumor antigen p53, ZINC ION
Authors:Wang, F, Cheng, W, Yuan, Z, Lin, D, Bao, C.
Deposit date:2024-01-03
Release date:2024-03-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The Crystal Structure of p53/BCL-xL fusion complex from Biortus.
To Be Published
8SBU
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BU of 8sbu by Molmil
Crystal structure of MBP fusion with HPPK from Methanocaldococcus jannaschii
Descriptor: Maltose/maltodextrin-binding periplasmic protein,6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Shaw, G.X, Needle, D, Stair, N.R, Cherry, S, Tropea, J.E, Waugh, D.S, Ji, X.
Deposit date:2023-04-04
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of MBP fusion with HPPK from Methanocaldococcus jannaschii
To be published
8ZLE
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BU of 8zle by Molmil
hAE3NTD2TMD with PT5,CLR, and Y01
Descriptor: CHOLESTEROL, CHOLESTEROL HEMISUCCINATE, [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate, ...
Authors:Jian, L, Zhang, Q, Yao, D, Wang, Q, Xia, Y, Qin, A, Cao, Y.
Deposit date:2024-05-19
Release date:2024-07-31
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:The structural insight into the functional modulation of human anion exchanger 3.
Nat Commun, 15, 2024
7N0I
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BU of 7n0i by Molmil
Structure of the SARS-CoV-2 N protein C-terminal domain bound to single-domain antibody E2
Descriptor: ACETATE ION, MAGNESIUM ION, Nucleoprotein, ...
Authors:Ye, Q, Corbett, K.D.
Deposit date:2021-05-25
Release date:2021-06-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for SARS-CoV-2 Nucleocapsid Protein Recognition by Single-Domain Antibodies.
Front Immunol, 12, 2021
8SFQ
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BU of 8sfq by Molmil
WT CRISPR-Cas12a post nontarget strand-cleavage with the the RuvC active site exposed.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (34-MER), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*T)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:WT CRISPR-Cas12a post nontarget strand-cleavage with the the RuvC active site exposed.
To Be Published
8WSW
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BU of 8wsw by Molmil
The Crystal Structure of LIMK2a from Biortus
Descriptor: 1,2-ETHANEDIOL, LIM domain kinase 2, ~{N}-[5-[2-[2,6-bis(chloranyl)phenyl]-5-[bis(fluoranyl)methyl]pyrazol-3-yl]-1,3-thiazol-2-yl]-2-methyl-propanamide
Authors:Wang, F, Cheng, W, Yuan, Z, Lin, D, Pan, W.
Deposit date:2023-10-17
Release date:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Crystal Structure of LIMK2a from Biortus.
To Be Published
9END
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BU of 9end by Molmil
Crystal structure of Methanopyrus kandleri malate dehydrogenase mutant 3
Descriptor: CHLORIDE ION, Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Coquille, S, Roche, J, Girard, E, Madern, D.
Deposit date:2024-03-12
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Navigating the conformational landscape of an enzyme. Stabilization of a low populated conformer by evolutionary mutations triggers Allostery into a non-allosteric enzyme.
To be published
8SFO
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BU of 8sfo by Molmil
WT CRISPR-Cas12a with a 20bp R-loop and nontarget strand in the RuvC active site.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (35-MER), DNA (40-MER), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:WT CRISPR-Cas12a with a 20bp R-loop and nontarget strand in the RuvC active site.
To Be Published
8XFY
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BU of 8xfy by Molmil
The Crystal Structure of RSK2 from Biortus.
Descriptor: 2,6-bis(fluoranyl)-4-[4-(4-morpholin-4-ylphenyl)pyridin-3-yl]phenol, Ribosomal protein S6 kinase alpha-3
Authors:Wang, F, Cheng, W, Lv, Z, Lin, D, Pan, W.
Deposit date:2023-12-14
Release date:2024-03-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The Crystal Structure of RSK2 from Biortus.
To Be Published
8ZMO
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BU of 8zmo by Molmil
Structure of a triple-helix region of human Collagen type XVII from Trautec
Descriptor: collagen type XVII
Authors:Chu, Y, Zhai, Y, Fan, X, Fu, S, Li, J, Wu, X, Cai, H, Wang, X, Li, D, Feng, P, Cao, K, Qian, S.
Deposit date:2024-05-23
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of a triple-helix region of human Collagen type XVII from Trautec
To Be Published
9CYO
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BU of 9cyo by Molmil
Crystal structure of wild-type human PTP1B (PTPN1) at room temperature (298 K)
Descriptor: BETA-MERCAPTOETHANOL, MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1
Authors:Ebrahim, A, Perdikari, A, Woods, V.A, Lawler, K, Bounds, R, Singh, N.I, Mehlman, T, Riley, B.T, Sharma, S, Morris, J.W, Keogh, J.M, Henning, E, Smith, M, Farooqi, I.S, Keedy, D.A.
Deposit date:2024-08-02
Release date:2024-08-21
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structures of human PTP1B variants reveal allosteric sites to target for weight loss therapy.
Biorxiv, 2024
9GH3
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BU of 9gh3 by Molmil
pleckstrin homology domain interacting protein with crystallization epitope mutations L1408N:R1409E
Descriptor: 1,2-ETHANEDIOL, PH-interacting protein
Authors:Fairhead, M, Strain-Damerell, C, Ye, M, Mackinnon, S.R, Pinkas, D, MacLean, E.M, Koekemoer, L, Damerell, D, Krojer, T, Arrowsmith, C.H, Edwards, A, Yue, W, Burgess-Brown, N, Marsden, B, von Delft, F, Structural Genomics Consortium (SGC)
Deposit date:2024-08-14
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:A fast, parallel method for efficiently exploring crystallization behaviour of large numbers of protein variants
To Be Published
9AVW
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BU of 9avw by Molmil
Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin
Descriptor: SULFATE ION, TGF-beta-activated kinase 1 and MAP3K7-binding protein 2, Ubiquitin, ...
Authors:Michel, M.A, Scutts, S, Komander, D.
Deposit date:2024-03-05
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.747 Å)
Cite:Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin
To be published
9ILB
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BU of 9ilb by Molmil
HUMAN INTERLEUKIN-1 BETA
Descriptor: PROTEIN (HUMAN INTERLEUKIN-1 BETA)
Authors:Yu, B, Blaber, M, Gronenborn, A.M, Clore, G.M, Caspar, D.L.D.
Deposit date:1998-10-22
Release date:1999-01-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography.
Proc.Natl.Acad.Sci.USA, 96, 1999
8VME
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BU of 8vme by Molmil
Crystal structure of the GSK-3/Axin complex bound to a phosphorylated beta-catenin T41A peptide
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Axin-1, Catenin beta-1, ...
Authors:Enos, M.D, Gavagan, M, Jameson, N, Zalatan, J.G, Weis, W.I.
Deposit date:2024-01-13
Release date:2024-08-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and functional effects of phosphopriming and scaffolding in the kinase GSK3beta
Sci.Signal., 2024
9CYQ
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BU of 9cyq by Molmil
Crystal structure of Q78R mutant human PTP1B (PTPN1) at room temperature (298 K)
Descriptor: BETA-MERCAPTOETHANOL, MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1
Authors:Ebrahim, A, Perdikari, A, Woods, V.A, Lawler, K, Bounds, R, Singh, N.I, Mehlman, T, Riley, B.T, Sharma, S, Morris, J.W, Keogh, J.M, Henning, E, Smith, M, Farooqi, I.S, Keedy, D.A.
Deposit date:2024-08-02
Release date:2024-08-21
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of human PTP1B variants reveal allosteric sites to target for weight loss therapy.
Biorxiv, 2024
6OAO
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BU of 6oao by Molmil
Structure of DBP in complex with human neutralizing antibody 092096
Descriptor: Antibody 092096 single chain variable fragment, Duffy binding surface protein region II, SULFATE ION
Authors:Urusova, D, Tolia, N.H.
Deposit date:2019-03-18
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.497 Å)
Cite:Structural basis for neutralization of Plasmodium vivax by naturally acquired human antibodies that target DBP.
Nat Microbiol, 4, 2019
8EEQ
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BU of 8eeq by Molmil
CryoEM structures of bAE1 captured in multiple states.
Descriptor: Anion exchange protein
Authors:Zhekova, H.R, Wang, W.G, Jiang, J.S, Tsirulnikov, K, Muhammad-Khan, G.H, Azimov, R, Abuladze, N, Kao, L, Newman, D, Noskov, S.Y, Tieleman, P, Zhou, Z.H, Pushkin, A, Kurtz, I.
Deposit date:2022-09-07
Release date:2023-01-25
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:CryoEM structures of anion exchanger 1 capture multiple states of inward- and outward-facing conformations.
Commun Biol, 5, 2022
9B00
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BU of 9b00 by Molmil
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
Descriptor: 13-(2-{[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]amino}-2-oxoethyl)-9,10-dimethoxy-5,6-dihydro-2H-[1,3]dioxolo[4,5-g]isoquinolino[3,2-a]isoquinolin-7-ium, 16S Ribosomal RNA, 23S Ribosomal RNA, ...
Authors:Batool, Z, Pavlova, J.A, Paranjpe, M.N, Tereshchenkov, A.G, Lukianov, D.A, Osterman, I.A, Bogdanov, A.A, Sumbatyan, N.V, Polikanov, Y.S.
Deposit date:2024-03-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Berberine analog of chloramphenicol exhibits a distinct mode of action and unveils ribosome plasticity.
Structure, 2024
8XGC
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BU of 8xgc by Molmil
Structure of yeast replisome associated with FACT and histone hexamer, Composite map
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, Chromosome segregation in meiosis protein 3, ...
Authors:Li, N, Gao, Y, Yu, D, Gao, N, Zhai, Y.
Deposit date:2023-12-15
Release date:2024-02-14
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Parental histone transfer caught at the replication fork.
Nature, 627, 2024
8SFN
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BU of 8sfn by Molmil
WT CRISPR-Cas12a with a 16bp R-loop and nontarget strand in the RuvC active site.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (30-MER), DNA (31-MER), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:WT CRISPR-Cas12a with a 16bp R-loop and nontarget strand in the RuvC active site.
To Be Published
8XHD
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BU of 8xhd by Molmil
Crystal structure of alpha-Oxoamine Synthase Alb29 with PLP cofactor and L-glutamate
Descriptor: 8-amino-7-oxononanoate synthase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid, PYRIDOXAL-5'-PHOSPHATE
Authors:Xu, M.J, Zhang, D.K.
Deposit date:2023-12-17
Release date:2024-05-01
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and mechanistic investigations on CC bond forming alpha-oxoamine synthase allowing L-glutamate as substrate.
Int.J.Biol.Macromol., 268, 2024
6U7K
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BU of 6u7k by Molmil
Prefusion structure of PEDV spike
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Wrapp, D, McLellan, J.S.
Deposit date:2019-09-03
Release date:2019-09-18
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:The 3.1-Angstrom Cryo-electron Microscopy Structure of the Porcine Epidemic Diarrhea Virus Spike Protein in the Prefusion Conformation.
J.Virol., 93, 2019
8SFI
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BU of 8sfi by Molmil
WT CRISPR-Cas12a with a 8bp R-loop
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (5'-D(P*CP*TP*TP*AP*TP*CP*AP*CP*TP*AP*AP*AP*AP*GP*AP*TP*CP*GP*GP*AP*AP*G)-3'), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*TP*A)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:WT CRISPR-Cas12a with a 8bp R-loop
To Be Published

224572

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