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PDB: 52974 件

2V8I
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Structure of a Family 2 Pectate Lyase in a Native Form
分子名称: IODIDE ION, PECTATE LYASE
著者Abbott, D.W, Boraston, A.B.
登録日2007-08-08
公開日2007-09-18
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献A Family 2 Pectate Lyase Displays a Rare Fold and Transition Metal-Assisted -Elimination.
J.Biol.Chem., 282, 2007
6IGP
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Crystal structure of S9 peptidase (inactive state)from Deinococcus radiodurans R1 in P212121
分子名称: Acyl-peptide hydrolase, putative, GLYCEROL
著者Yadav, P, Goyal, V.D, Kumar, A, Makde, R.D.
登録日2018-09-25
公開日2018-11-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
2V84
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Crystal Structure of the Tp0655 (TpPotD) Lipoprotein of Treponema pallidum
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, SPERMIDINE/PUTRESCINE ABC TRANSPORTER, ...
著者Machius, M, Brautigam, C.A, Tomchick, D.R, Ward, P, Otwinowski, Z, Blevine, J.S, Deka, R.K, Norgard, M.V.
登録日2007-08-02
公開日2007-09-25
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Structural and Biochemical Basis for Polyamine Binding to the Tp0655 Lipoprotein of Treponema Pallidum: Putative Role for Tp0655 (Tppotd) as a Polyamine Receptor.
J.Mol.Biol., 373, 2007
2VEP
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Crystal Structure Of The Full Length Bifunctional Enzyme Pria
分子名称: PHOSPHORIBOSYL ISOMERASE A, SULFATE ION
著者Wright, H, Noda-Garcia, L, Ochoa-Leyva, A, Hodgson, D.A, Fulop, V, Barona-Gomez, F.
登録日2007-10-25
公開日2007-11-20
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Structure/Function Relationship of a Dual Substrate (Betaalpha)(8)-Isomerase
Biochem.Biophys.Res.Commun., 365, 2008
2I6E
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Crystal structure of protein DR0370 from Deinococcus radiodurans, Pfam DUF178
分子名称: Hypothetical protein, SULFATE ION
著者Tyagi, R, Kumaran, D, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2006-08-28
公開日2006-09-05
最終更新日2021-02-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献X-ray structures of two proteins belonging to Pfam DUF178 revealed unexpected structural similarity to the DUF191 Pfam family.
Bmc Struct.Biol., 7, 2007
2VHV
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BU of 2vhv by Molmil
Crystal structure of the D270A mutant of L-alanine dehydrogenase from Mycobacterium tuberculosis in complex with NADH.
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ALANINE DEHYDROGENASE
著者Agren, D, Schneider, G.
登録日2007-11-26
公開日2008-03-11
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Three-Dimensional Structures of Apo- and Holo-L-Alanine Dehydrogenase from Mycobacterium Tuberculosis Reveal Conformational Changes Upon Coenzyme Binding.
J.Mol.Biol., 377, 2008
7ZKG
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BU of 7zkg by Molmil
C-Methyltransferase PsmD from Streptomyces griseofuscus with bound cofactor (crystal form 2)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Methyltransferase, PHOSPHATE ION, ...
著者Weiergraeber, O.H, Amariei, D.A, Pozhydaieva, N, Pietruszka, J.
登録日2022-04-13
公開日2022-12-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Enzymatic C3-Methylation of Indoles Using Methyltransferase PsmD-Crystal Structure, Catalytic Mechanism, and Preparative Applications
Acs Catalysis, 2022
7ZGT
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C-Methyltransferase PsmD from Streptomyces griseofuscus (apo form)
分子名称: FORMIC ACID, Methyltransferase, PHOSPHATE ION, ...
著者Weiergraeber, O.H, Amariei, D.A, Pozhydaieva, N, Pietruszka, J.
登録日2022-04-04
公開日2022-12-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Enzymatic C3-Methylation of Indoles Using Methyltransferase PsmD-Crystal Structure, Catalytic Mechanism, and Preparative Applications
Acs Catalysis, 2022
2VT1
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BU of 2vt1 by Molmil
Crystal structure of the cytoplasmic domain of Spa40, the specificity switch for the Shigella flexneri Type III Secretion System
分子名称: SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAS
著者Deane, J.E, Graham, S.C, Mitchell, E.P, Flot, D, Johnson, S, Lea, S.M.
登録日2008-05-08
公開日2008-05-20
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Spa40, the Specificity Switch for the Shigella Flexneri Type III Secretion System
Mol.Microbiol., 69, 2008
4RE6
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BU of 4re6 by Molmil
Acylaminoacyl peptidase complexed with a chloromethylketone inhibitor
分子名称: Acylamino-acid-releasing enzyme, CHLORIDE ION, N-[(benzyloxy)carbonyl]glycyl-N-[(2S,3R)-4-chloro-3-hydroxy-1-phenylbutan-2-yl]glycinamide
著者Menyhard, D.K, Orgovan, Z, Szeltner, Z, Szamosi, I, Harmat, V.
登録日2014-09-22
公開日2015-01-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Catalytically distinct states captured in a crystal lattice: the substrate-bound and scavenger states of acylaminoacyl peptidase and their implications for functionality.
Acta Crystallogr.,Sect.D, 71, 2015
2WEZ
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BU of 2wez by Molmil
Human BACE-1 in complex with 1-ethyl-N-((1S,2R)-2-hydroxy-3-(((3-(methyloxy)phenyl)methyl)amino)-1-(phenylmethyl)propyl)-4-(2-oxo-1- pyrrolidinyl)-1H-indole-6-carboxamide
分子名称: BETA-SECRETASE 1, N-{(1S,2R)-1-BENZYL-2-HYDROXY-3-[(3-METHOXYBENZYL)AMINO]PROPYL}-1-ETHYL-4-(2-OXOPYRROLIDIN-1-YL)-1H-INDOLE-6-CARBOXAMIDE
著者Charrier, N, Clarke, B, Cutler, L, Demont, E, Dingwall, C, Dunsdon, R, Hawkins, J, Howes, C, Hubbard, J, Hussain, I, Maile, G, Matico, R, Mosley, J, Naylor, A, O'Brien, A, Redshaw, S, Rowland, P, Soleil, V, Smith, K.J, Sweitzer, S, Theobald, P, Vesey, D, Walter, D.S, Wayne, G.
登録日2009-04-02
公開日2009-05-19
最終更新日2019-05-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Second Generation of Bace-1 Inhibitors. Part 1: The Need for Improved Pharmacokinetics.
Bioorg.Med.Chem.Lett., 19, 2009
5D2V
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BU of 5d2v by Molmil
Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 4 Wild Type
分子名称: De novo designed kemp eliminase KE07
著者Jackson, C.J, Hong, N.-S, Carr, P.D.
登録日2015-08-06
公開日2016-09-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 1 Wild Type
To Be Published
6PEY
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MTHFR with mutation Asp120Ala
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Methylenetetrahydrofolate reductase
著者Gallagher, E.L, Gurney, L.A, Frasco, F.G, Trimmer, E, Bolen, R.L, Collins, K, Garland, E, Halloran, J, Handley-Pendelton, J, Hernandez, V, Leffler, S, Perez, A, Soares, A, Stojanoff, V, Williams, D.
登録日2019-06-21
公開日2019-09-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献Examination of Asp120Ala a Chemically Important Novel Mutation in the Enzyme Mthylenetetrahydrofolate Reductase
To be published
8HZZ
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GuApiGT (UGT79B74)
分子名称: SULFATE ION, apiosyltransferase
著者Wang, H.T, Wang, Z.L, Li, F.D, Ye, M.
登録日2023-01-10
公開日2023-09-20
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Insights into the missing apiosylation step in flavonoid apiosides biosynthesis of Leguminosae plants.
Nat Commun, 14, 2023
7ZKH
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BU of 7zkh by Molmil
C-Methyltransferase PsmD from Streptomyces griseofuscus with bound cofactor (crystal form 1)
分子名称: Methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE, TRIETHYLENE GLYCOL, ...
著者Weiergraeber, O.H, Amariei, D.A, Pozhydaieva, N, Pietruszka, J.
登録日2022-04-13
公開日2022-12-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Enzymatic C3-Methylation of Indoles Using Methyltransferase PsmD-Crystal Structure, Catalytic Mechanism, and Preparative Applications
Acs Catalysis, 2022
6PG0
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Protein Tyrosine Phosphatase 1B (1-301), P188A mutant, vanadate bound state
分子名称: GLYCEROL, Tyrosine-protein phosphatase non-receptor type 1, VANADATE ION
著者Cui, D.S, Lipchock, J.M, Loria, J.P.
登録日2019-06-23
公開日2019-08-07
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Uncovering the Molecular Interactions in the Catalytic Loop That Modulate the Conformational Dynamics in Protein Tyrosine Phosphatase 1B.
J.Am.Chem.Soc., 141, 2019
7ZLH
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BU of 7zlh by Molmil
Cryo-EM structure of C-mannosyltransferase CeDPY19, in apo state, bound to CMT2-Fab and anti-Fab nanobody
分子名称: Anti-Fab nanobody, C-mannosyltransferase dpy-19, CMT2-Fab heavy chain, ...
著者Bloch, J.S, Mukherjee, S, Irobalieva, R, Kossiakoff, A.A, Goddard-Borger, E.D, Locher, K.P.
登録日2022-04-15
公開日2023-01-11
最終更新日2023-05-10
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献Structure, sequon recognition and mechanism of tryptophan C-mannosyltransferase.
Nat.Chem.Biol., 19, 2023
2W9X
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BU of 2w9x by Molmil
The active site of a carbohydrate esterase displays divergent catalytic and non-catalytic binding functions
分子名称: GLYCEROL, PUTATIVE ACETYL XYLAN ESTERASE
著者Montanier, C, Money, V.A, Pires, V, Flint, J.E, Benedita, P.A, Goyal, A, Prates, J.A, Izumi, A, Stalbrand, H, Morland, C, Cartmell, A, Kolenova, K, Topakas, E, Dobson, E, Bolam, D.N, Davies, G.J, Fontes, C.M, Gilbert, H.J.
登録日2009-01-29
公開日2009-03-24
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Active Site of a Carbohydrate Esterase Displays Divergent Catalytic and Noncatalytic Binding Functions.
Plos Biol., 7, 2009
7ZLG
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BU of 7zlg by Molmil
Cryo-EM structure of C-mannosyltransferase CeDPY19, in complex with acceptor peptide and bound to CMT2-Fab and anti-Fab nanobody
分子名称: Anti-Fab nanobody, C-mannosyltransferase dpy-19, CMT2-Fab heavy chain, ...
著者Bloch, J.S, Mukherjee, S, Mao, R, Irobalieva, R, Kossiakoff, A.A, Goddard-Borger, E.D, Locher, K.P.
登録日2022-04-15
公開日2023-01-11
最終更新日2023-05-10
実験手法ELECTRON MICROSCOPY (2.72 Å)
主引用文献Structure, sequon recognition and mechanism of tryptophan C-mannosyltransferase.
Nat.Chem.Biol., 19, 2023
7ZLJ
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BU of 7zlj by Molmil
Cryo-EM structure of C-mannosyltransferase CeDPY19, in ternary complex with Dol25-P-C-Man and acceptor peptide, bound to CMT2-Fab and anti-Fab nanobody
分子名称: Anti-Fab nanobody, C-mannosyltransferase dpy-19, CMT2-Fab heavy chain, ...
著者Bloch, J.S, Mao, R, Mukherjee, S, Boilevin, J, Irobalieva, R, Darbre, T, Reymond, J.L, Kossiakoff, A.A, Goddard-Borger, E.D, Locher, K.P.
登録日2022-04-15
公開日2023-01-11
最終更新日2023-05-10
実験手法ELECTRON MICROSCOPY (3.63 Å)
主引用文献Structure, sequon recognition and mechanism of tryptophan C-mannosyltransferase.
Nat.Chem.Biol., 19, 2023
2WB6
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Crystal structure of AFV1-102, a protein from the Acidianus Filamentous Virus 1
分子名称: AFV1-102, CHLORIDE ION
著者Keller, J, Leulliot, N, Collinet, B, Campanacci, V, Cambillau, C, Pranghisvilli, D, van Tilbeurgh, H.
登録日2009-02-22
公開日2009-03-03
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal Structure of Afv1-102, a Protein from the Acidianus Filamentous Virus 1.
Protein Sci., 18, 2009
1TCU
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BU of 1tcu by Molmil
Crystal Structure of the Purine Nucleoside Phosphorylase from Schistosoma mansoni in complex with phosphate and acetate
分子名称: ACETATE ION, DIMETHYL SULFOXIDE, PHOSPHATE ION, ...
著者Pereira, H.D, Franco, G.R, Cleasby, A, Garratt, R.C.
登録日2004-05-21
公開日2005-05-24
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures for the Potential Drug Target Purine Nucleoside Phosphorylase from Schistosoma mansoni Causal Agent of Schistosomiasis.
J.Mol.Biol., 353, 2005
8IBP
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Crystal structure of Mycobacterium tuberculosis R21K ClpC1 N-terminal domain in complex with Lassomycin
分子名称: ACETATE ION, Lassomycin, Negative regulator of genetic competence ClpC/mecB
著者Jagdev, M.K, Vasudevan, D.
登録日2023-02-10
公開日2023-09-20
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of the N-terminal domain of MtClpC1 in complex with the anti-mycobacterial natural peptide Lassomycin.
Int.J.Biol.Macromol., 253, 2023
7ZLI
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BU of 7zli by Molmil
Cryo-EM structure of C-mannosyltransferase CeDPY19, in complex with Dol25-P-Man and bound to CMT2-Fab and anti-Fab nanobody
分子名称: Anti-Fab nanobody, C-mannosyltransferase dpy-19, CMT2-Fab heavy chain, ...
著者Bloch, J.S, Mukherjee, S, Boilevin, J, Irobalieva, R, Darbre, T, Reymond, J.L, Kossiakoff, A.A, Goddard-Borger, E.D, Locher, K.P.
登録日2022-04-15
公開日2023-01-11
最終更新日2023-05-10
実験手法ELECTRON MICROSCOPY (2.99 Å)
主引用文献Structure, sequon recognition and mechanism of tryptophan C-mannosyltransferase.
Nat.Chem.Biol., 19, 2023
6PLK
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Crystal structure of ZIKV-116 Fab in complex with ZIKV envelope DIII
分子名称: Env, ZIKV-116 heavy chain, ZIKV-116 light chain
著者Zhao, H, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2019-07-01
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Mechanism of differential Zika and dengue virus neutralization by a public antibody lineage targeting the DIII lateral ridge.
J.Exp.Med., 217, 2020

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