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PDB: 53012 件

6B9Z
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Trastuzumab Fab v3
分子名称: Immunoglobulin G binding protein A, Protein L, Trastuzumab Fab heavy chain, ...
著者Bzymek, K.P, King, J.D, Williams, J.C.
登録日2017-10-11
公開日2018-09-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Template-Catalyzed, Disulfide Conjugation of Monoclonal Antibodies Using a Natural Amino Acid Tag.
Bioconjug. Chem., 29, 2018
8CPC
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3D electron diffraction structure of Hen Egg-White Lysozyme from nano-crystals obtained by high pressure freezing and cryo-sectioning
分子名称: Lysozyme C
著者Moriscot, C, Schoehn, G, Housset, D.
登録日2023-03-02
公開日2023-09-20
実験手法ELECTRON CRYSTALLOGRAPHY (2.91 Å)
主引用文献High pressure freezing and cryo-sectioning can be used for protein structure determination by electron diffraction.
Ultramicroscopy, 254, 2023
8TYY
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Structure of a bacterial Ubl-deubiquitinase complex (form 2)
分子名称: DUB(BilC) E33A Mutant, Ubl(BilA), ZINC ION
著者Ye, Q, Gong, M, Corbett, K.D.
登録日2023-08-26
公開日2024-06-12
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献A eukaryotic-like ubiquitination system in bacterial antiviral defence.
Nature, 2024
6BAS
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Crystal structure of Thermus thermophilus Rod shape determining protein RodA D255A mutant (Q5SIX3_THET8)
分子名称: CHLORIDE ION, Peptidoglycan glycosyltransferase RodA
著者Sjodt, M, Brock, K, Dobihal, G, Rohs, P.D.A, Green, A.G, Hopf, T.A, Meeske, A.J, Marks, D.S, Bernhardt, T.G, Rudner, D.Z, Kruse, A.C.
登録日2017-10-15
公開日2018-03-28
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.194 Å)
主引用文献Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis.
Nature, 556, 2018
8TYX
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Structure of a bacterial Ubl-deubiquitinase complex (form 1)
分子名称: DUB(BilC) E33A Mutant, Ubl(BilA), ZINC ION
著者Ye, Q, Gong, M, Corbett, K.D.
登録日2023-08-26
公開日2024-06-12
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献A eukaryotic-like ubiquitination system in bacterial antiviral defence.
Nature, 2024
8TYZ
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Structure of a bacterial E1-E2-Ubl complex (form 2)
分子名称: E1(BilD), E2(BilB), Ubl(BilA), ...
著者Ye, Q, Chambers, L.R, Corbett, K.D.
登録日2023-08-26
公開日2024-06-12
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献A eukaryotic-like ubiquitination system in bacterial antiviral defence.
Nature, 2024
5U6E
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Crystal structure of clade A/E HIV-1 gp120 core in complex with NBD-14010
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, N-{(1S)-2-amino-1-[5-(hydroxymethyl)-4-methyl-1,3-thiazol-2-yl]ethyl}-5-(4-chloro-3-fluorophenyl)-1H-pyrrole-2-carboxamide, ...
著者Kwon, Y.D, Debnath, A.K, Kwong, P.D.
登録日2016-12-07
公開日2017-03-22
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.095 Å)
主引用文献Synthesis, Antiviral Potency, in Vitro ADMET, and X-ray Structure of Potent CD4 Mimics as Entry Inhibitors That Target the Phe43 Cavity of HIV-1 gp120.
J. Med. Chem., 60, 2017
5K86
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Aza-glycine containing collagen peptide
分子名称: Aza-glycine containing collagen peptide, SULFATE ION
著者Chenoweth, D.M, Kasznel, A.J, Hai, Y.
登録日2016-05-27
公開日2017-06-28
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.127 Å)
主引用文献Structural Basis for Aza-Glycine Stabilization of Collagen.
J. Am. Chem. Soc., 139, 2017
7ANM
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Nudaurelia capensis omega virus capsid: virus-like particles expressed in Nicotiana benthamiana
分子名称: p70
著者Castells-Graells, R, Ribeiro, J.R.S, Domitrovic, T, Hesketh, E.L, Scarff, C.A, Johnson, J.E, Ranson, N.A, Lawson, D.M, Lomonossoff, G.P.
登録日2020-10-12
公開日2021-08-25
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (2.72 Å)
主引用文献Plant-expressed virus-like particles reveal the intricate maturation process of a eukaryotic virus.
Commun Biol, 4, 2021
7ATA
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Nudaurelia capensis omega virus procapsid: virus-like particles expressed in Nicotiana benthamiana
分子名称: p70
著者Castells-Graells, R, Ribeiro, J.R.S, Domitrovic, T, Hesketh, E.L, Scarff, C.A, Johnson, J.E, Ranson, N.A, Lawson, D.M, Lomonossoff, G.P.
登録日2020-10-29
公開日2021-08-25
実験手法ELECTRON MICROSCOPY (6.63 Å)
主引用文献Plant-expressed virus-like particles reveal the intricate maturation process of a eukaryotic virus.
Commun Biol, 4, 2021
7KHA
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Cryo-EM Structure of the Desulfovibrio vulgaris Type I-C Apo Cascade
分子名称: CRISPR-associated protein, CT1133 family, CT1134 family, ...
著者O'Brien, R, Wrapp, D, Bravo, J.P.K, Schwartz, E, Taylor, D.
登録日2020-10-20
公開日2020-11-11
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.13 Å)
主引用文献Structural basis for assembly of non-canonical small subunits into type I-C Cascade.
Nat Commun, 11, 2020
6S8A
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Crystal Structure of EGFR-T790M/C797S in Complex with Covalent Pyrrolopyrimidine 19h
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Epidermal growth factor receptor, ~{N}-[3-[6-[4-(4-methylpiperazin-1-yl)phenyl]-4-(2-methylpropoxy)-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl]phenyl]propanamide
著者Niggenaber, J, Mueller, M.P, Rauh, D.
登録日2019-07-09
公開日2019-10-16
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Inhibition of osimertinib-resistant epidermal growth factor receptor EGFR-T790M/C797S.
Chem Sci, 10, 2019
7PTV
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Structure of the Mimivirus genomic fibre asymmetric unit
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Putative glucose-methanol-choline oxidoreductase protein
著者Villalta, A, Schmitt, A, Estrozi, L.F, Quemin, E.R.J, Alempic, J.M, Lartigue, A, Prazak, V, Belmudes, L, Vasishtan, D, Colmant, A.M.G, Honore, F.A, Coute, Y, Grunewald, K, Abergel, C.
登録日2021-09-27
公開日2022-08-10
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献The giant mimivirus 1.2 Mb genome is elegantly organized into a 30 nm diameter helical protein shield.
Elife, 11, 2022
8HFK
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Crystal Structure of CbAR mutant (H162F) in complex with NADP+ and halogenated aryl ketone
分子名称: 2-bromanyl-1-(4-bromanyl-2-oxidanyl-phenyl)ethanone, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Versicolorin reductase
著者Hou, X.D, Yin, D.J, Rao, Y.J.
登録日2022-11-10
公開日2023-06-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural analysis of an anthrol reductase inspires enantioselective synthesis of enantiopure hydroxycycloketones and beta-halohydrins.
Nat Commun, 14, 2023
8HFJ
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Crystal Structure of CbAR mutant (H162F) in complex with NADP+ and a bulky 1,3-cyclodiketone
分子名称: 2-methyl-2-[(4-methylphenyl)methyl]cyclopentane-1,3-dione, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Versicolorin reductase
著者Hou, X.D, Yin, D.J, Rao, Y.J.
登録日2022-11-10
公開日2023-06-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural analysis of an anthrol reductase inspires enantioselective synthesis of enantiopure hydroxycycloketones and beta-halohydrins.
Nat Commun, 14, 2023
6SC9
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dAb3/HOIP-RBR-HOIPIN-8
分子名称: 2-[3-[2,6-bis(fluoranyl)-4-(1~{H}-pyrazol-4-yl)phenyl]-3-oxidanylidene-prop-1-enyl]-4-(1-methylpyrazol-4-yl)benzoic acid, CHLORIDE ION, E3 ubiquitin-protein ligase RNF31, ...
著者Tsai, Y.-C.I, Johansson, H, House, D, Rittinger, K.
登録日2019-07-23
公開日2019-11-27
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Single-Domain Antibodies as Crystallization Chaperones to Enable Structure-Based Inhibitor Development for RBR E3 Ubiquitin Ligases.
Cell Chem Biol, 27, 2020
5JYE
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Structures of Streptococcus agalactiae GBS GAPDH in different enzymatic states
分子名称: Glyceraldehyde-3-phosphate dehydrogenase, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Schormann, N, Chattopadhyay, D.
登録日2016-05-13
公開日2016-12-21
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Crystal Structures of Group B Streptococcus Glyceraldehyde-3-Phosphate Dehydrogenase: Apo-Form, Binary and Ternary Complexes.
PLoS ONE, 11, 2016
6S8R
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D. melanogaster RNA helicase Me31B in complex with GIGYF
分子名称: ACETATE ION, ATP-dependent RNA helicase me31b, GIGYF family protein CG11148
著者Peter, D, Valkov, E.
登録日2019-07-10
公開日2019-09-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Molecular basis for GIGYF-Me31B complex assembly in 4EHP-mediated translational repression.
Genes Dev., 33, 2019
5YQW
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Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marine Vibrio bacteria
分子名称: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NICKEL (II) ION, ...
著者Suginta, W, Sritho, N, Ranok, A, Kitaoku, Y, Bulmer, D.M, van den Berg, B, Fukamizo, T.
登録日2017-11-08
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marineVibriobacteria.
J. Biol. Chem., 293, 2018
7UJI
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Structure of the P130R single variant of serine hydroxymethyltransferase 8 from Glycine max cultivar Essex complexed with PLP
分子名称: 1,2-ETHANEDIOL, Serine hydroxymethyltransferase
著者Korasick, D.A, Beamer, L.J.
登録日2022-03-30
公開日2023-04-12
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural and functional analysis of two SHMT8 variants associated with soybean cyst nematode resistance.
Febs J., 291, 2024
6FJ7
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Caldiarchaeum Subterraneum Ubiquitin
分子名称: SULFATE ION, Ubiquitin-like protein
著者Wojtynek, M, Martin, J, Hartmann, M.D.
登録日2018-01-21
公開日2018-07-25
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Rpn11-mediated ubiquitin processing in an ancestral archaeal ubiquitination system.
Nat Commun, 9, 2018
5K48
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VIM-2 Metallo Beta Lactamase in complex with 3-(mercaptomethyl)-[1,1'-biphenyl]-4-carboxylic acid
分子名称: 4-phenyl-2-(sulfanylmethyl)benzoic acid, Beta-lactamase VIM-2, FORMIC ACID, ...
著者Zollman, D, McDonough, M, Brem, J, Schofield, C.
登録日2016-05-20
公開日2017-06-07
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.744 Å)
主引用文献In Silico Fragment-Based Design Identifies Subfamily B1 Metallo-beta-lactamase Inhibitors.
J. Med. Chem., 61, 2018
6F18
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Structure of Mb NMH H64V, V68A mutant complex with EDA
分子名称: ETHYL ACETATE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
登録日2017-11-21
公開日2018-08-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6Y7M
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Crystal structure of the complex resulting from the reaction between the SARS-CoV main protease and tert-butyl (1-((S)-3-cyclohexyl-1-(((S)-4-(cyclopropylamino)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)butan-2-yl)amino)-1-oxopropan-2-yl)-2-oxo-1,2-dihydropyridin-3-yl)carbamate
分子名称: 3C-like proteinase, DIMETHYL SULFOXIDE, ~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclohexyl-1-[[(2~{S},3~{R})-4-(cyclopropylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate
著者Zhang, L, Lin, D, Hilgenfeld, R.
登録日2020-03-01
公開日2020-03-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved alpha-ketoamide inhibitors.
Science, 368, 2020
7KZA
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Potent SARS-CoV-2 binding and neutralization through maturation of iconic SARS-CoV-1antibodies
分子名称: CHLORIDE ION, Fab fragment heavy chain of anti-CoV2-RBD antibody variant CR3022-B6, Fab fragment light chain of anti-CoV2-RBD antibody variant CR3022-B6, ...
著者Langley, D.B, Christ, D.
登録日2020-12-10
公開日2021-02-24
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Potent SARS-CoV-2 binding and neutralization through maturation of iconic SARS-CoV-1 antibodies.
Mabs, 13

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件を2024-07-31に公開中

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