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PDB: 53878 results

5X7F
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BU of 5x7f by Molmil
Structure of a O-methyltransferase from Mycobacterium tuberculosis at 2.0 resolution
Descriptor: Putative O-methyltransferase Rv1220c, S-ADENOSYLMETHIONINE
Authors:Yan, Q, Jiang, D.
Deposit date:2017-02-25
Release date:2017-03-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Structure of a O-methyltransferase from Mycobacterium tuberculosis at 2.0 resolution
To Be Published
8PPO
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BU of 8ppo by Molmil
First Intermediate Amyloid (FIA) - Tau
Descriptor: Microtubule-associated protein tau
Authors:Lovestam, S, Scheres, S.H.W, Goedert, M, Li, D.
Deposit date:2023-07-07
Release date:2023-08-02
Last modified:2024-01-24
Method:ELECTRON MICROSCOPY (2 Å)
Cite:Disease-specific tau filaments assemble via polymorphic intermediates.
Nature, 625, 2024
6QSG
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BU of 6qsg by Molmil
Crystal structure of the hybrid bioinorganic complex of Pizza6S and Keggin (STA)
Descriptor: Keggin (STA), Pizza6S
Authors:Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D.
Deposit date:2019-02-20
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
8T10
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BU of 8t10 by Molmil
TRPV1 in nanodisc bound with two LPA molecules in opposite monomers
Descriptor: (2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate, (2R)-3-{[(R)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctadecanoate, SODIUM ION, ...
Authors:Arnold, W.R, Julius, D, Cheng, Y.
Deposit date:2023-06-01
Release date:2024-05-08
Last modified:2024-10-02
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of TRPV1 modulation by endogenous bioactive lipids.
Nat.Struct.Mol.Biol., 31, 2024
2IJR
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BU of 2ijr by Molmil
Crystal structure of a protein api92 from Yersinia pseudotuberculosis, Pfam DUF1281
Descriptor: Hypothetical protein api92
Authors:Jin, X, Min, T, Bonanno, J.B, Sauder, J.M, Wasserman, S, Smith, D, Burley, S.K, Shapiro, L, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-09-30
Release date:2006-10-31
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of a hypothetical protein from Yersinia pseudotuberculosis
To be Published
1D32
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BU of 1d32 by Molmil
DRUG-INDUCED DNA REPAIR: X-RAY STRUCTURE OF A DNA-DITERCALINIUM COMPLEX
Descriptor: DITERCALINIUM, DNA (5'-D(*CP*GP*CP*G)-3')
Authors:Gao, Q, Williams, L.D, Egli, M, Rabinovich, D, Chen, S.-L, Quigley, G.J, Rich, A.
Deposit date:1991-01-23
Release date:1992-04-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Drug-induced DNA repair: X-ray structure of a DNA-ditercalinium complex.
Proc.Natl.Acad.Sci.USA, 88, 1991
7LFB
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BU of 7lfb by Molmil
Fab 7D6 bound to ApoL1 NTD
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Apolipoprotein L1, Fab 7D6 heavy chain, ...
Authors:Ultsch, M, Kirchhofer, D.
Deposit date:2021-01-16
Release date:2021-08-04
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.913 Å)
Cite:Structures of the ApoL1 and ApoL2 N-terminal domains reveal a non-classical four-helix bundle motif.
Commun Biol, 4, 2021
6QUK
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BU of 6quk by Molmil
Protein crystallization by ionic liquid hydrogel support: glucose isomerase grown by using ionic liquid hydrogel
Descriptor: GLYCEROL, MANGANESE (II) ION, SULFATE ION, ...
Authors:Belviso, B.D, Caliandro, R, Caliandro, R.
Deposit date:2019-02-27
Release date:2019-03-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Protein Crystallization in Ionic-Liquid Hydrogel Composite Membranes
Crystals, 9, 2019
6QZB
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BU of 6qzb by Molmil
Structure of Mcl-1 in complex with compound 8d
Descriptor: (2~{R})-2-[[6-ethyl-5-(2-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid, Induced myeloid leukemia cell differentiation protein Mcl-1
Authors:Dokurno, P, Szlavik, Z, Ondi, L, Csekei, M, Paczal, A, Szabo, Z.B, Radics, G, Murray, J, Davidson, J, Chen, I, Davis, B, Hubbard, R.E, Pedder, C, Surgenor, A.E, Smith, J, Robertson, A, LeToumelin-Braizat, G, Cauquil, N, Zarka, M, Demarles, D, Perron-Sierra, F, Geneste, O, Kotschy, A.
Deposit date:2019-03-11
Release date:2019-08-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-Guided Discovery of a Selective Mcl-1 Inhibitor with Cellular Activity.
J.Med.Chem., 62, 2019
1D4M
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BU of 1d4m by Molmil
THE CRYSTAL STRUCTURE OF COXSACKIEVIRUS A9 TO 2.9 A RESOLUTION
Descriptor: 5-(7-(4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)HEPTYL)-3-METHYL ISOXAZOLE, MYRISTIC ACID, PROTEIN (COXSACKIEVIRUS A9)
Authors:Hendry, E, Hatanaka, H, Fry, E, Smyth, M, Tate, J, Stanway, G, Santti, J, Maaronen, M, Hyypia, T, Stuart, D.
Deposit date:1999-10-04
Release date:1999-12-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystal structure of coxsackievirus A9: new insights into the uncoating mechanisms of enteroviruses.
Structure Fold.Des., 7, 1999
5KX1
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BU of 5kx1 by Molmil
NMR Solution Structure of Designed Peptide NC_cHHH_D1
Descriptor: Designed peptide NC_cHHH_D1
Authors:Harvey, P.J, Craik, D.J.
Deposit date:2016-07-19
Release date:2016-09-21
Last modified:2024-11-13
Method:SOLUTION NMR
Cite:Accurate de novo design of hyperstable constrained peptides.
Nature, 538, 2016
1D6O
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BU of 1d6o by Molmil
NATIVE FKBP
Descriptor: AMMONIUM ION, PROTEIN (FK506-BINDING PROTEIN), SULFATE ION
Authors:Burkhard, P, Taylor, P, Walkinshaw, M.D.
Deposit date:1999-10-15
Release date:1999-10-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray structures of small ligand-FKBP complexes provide an estimate for hydrophobic interaction energies.
J.Mol.Biol., 295, 2000
7LF7
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BU of 7lf7 by Molmil
Fab 6D12 bound to ApoL1 NTD
Descriptor: Apolipoprotein L1, ETHANOL, Fab 6D12 heavy chain, ...
Authors:Ultsch, M, Kirchhofer, D.
Deposit date:2021-01-15
Release date:2021-08-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.026 Å)
Cite:Structures of the ApoL1 and ApoL2 N-terminal domains reveal a non-classical four-helix bundle motif.
Commun Biol, 4, 2021
7L5X
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BU of 7l5x by Molmil
p97-R155H mutant dodecamer II
Descriptor: Transitional endoplasmic reticulum ATPase
Authors:Nandi, P, Li, S, Coulmbres, R.C.A, Wang, F, Williams, D.R, Malyutin, A.G, Poh, Y.-P, Chou, T.-F, Chiu, P.-L.
Deposit date:2020-12-23
Release date:2021-08-04
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Structural and Functional Analysis of Disease-Linked p97 ATPase Mutant Complexes.
Int J Mol Sci, 22, 2021
5ZYJ
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BU of 5zyj by Molmil
Crystal structure of CERT START domain in complex with compound E16A
Descriptor: 2-[4-[4-pentyl-3-[(1~{S},2~{R})-2-pyridin-2-ylcyclopropyl]phenyl]phenyl]sulfonylethanol, GLYCEROL, LIPID-TRANSFER PROTEIN CERT
Authors:Suzuki, M, Nakao, N, Ueno, M, Sakai, S, Egawa, D, Hanzawa, H, Kawasaki, S, Kumagai, K, Kobayashi, S, Hanada, K.
Deposit date:2018-05-25
Release date:2019-02-27
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT
Commun Chem, 2019
6X2Z
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BU of 6x2z by Molmil
hEAAT3-OFS-Asp
Descriptor: ASPARTIC ACID, Excitatory amino acid transporter 3, SODIUM ION
Authors:Qiu, B, Matthies, D, Boudker, O.
Deposit date:2020-05-21
Release date:2021-03-17
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Cryo-EM structures of excitatory amino acid transporter 3 visualize coupled substrate, sodium, and proton binding and transport.
Sci Adv, 7, 2021
7LFD
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BU of 7lfd by Molmil
Fab 7D6 bound to ApoL1 BH3 like peptide
Descriptor: AMMONIUM ION, Apolipoprotein L1 BH3 like peptide, CITRATE ANION, ...
Authors:Ultsch, M, Kirchhofer, D.
Deposit date:2021-01-16
Release date:2021-08-04
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.157 Å)
Cite:Structures of the ApoL1 and ApoL2 N-terminal domains reveal a non-classical four-helix bundle motif.
Commun Biol, 4, 2021
3EOE
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BU of 3eoe by Molmil
Crystal Structure of Pyruvate Kinase from toxoplasma gondii, 55.m00007
Descriptor: GLYCEROL, Pyruvate kinase
Authors:Wernimont, A.K, Lew, J, Kozieradzki, I, Wasney, G, Hassani, A, Vedadi, M, Cossar, D, Schapiro, M, Bochkarev, A, Arrowsmith, C.H, Bountra, C, Weigelt, J, Edwards, A.M, Hui, R, Pizarro, J, Structural Genomics Consortium (SGC)
Deposit date:2008-09-26
Release date:2008-10-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:The crystal structure of Toxoplasma gondii pyruvate kinase 1.
Plos One, 5, 2010
6X3E
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BU of 6x3e by Molmil
hEAAT3-Asymmetric-1o2i
Descriptor: ASPARTIC ACID, Excitatory amino acid transporter 3, SODIUM ION
Authors:Qiu, B, Matthies, D, Boudker, O.
Deposit date:2020-05-21
Release date:2021-03-17
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Cryo-EM structures of excitatory amino acid transporter 3 visualize coupled substrate, sodium, and proton binding and transport.
Sci Adv, 7, 2021
157D
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BU of 157d by Molmil
CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS
Descriptor: RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*AP*GP*CP*G)-3')
Authors:Leonard, G.A, McAuley-Hecht, K.E, Ebel, S, Lough, D.M, Brown, T, Hunter, W.N.
Deposit date:1994-02-01
Release date:1994-05-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal and molecular structure of r(CGCGAAUUAGCG): an RNA duplex containing two G(anti).A(anti) base pairs.
Structure, 2, 1994
6WQU
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BU of 6wqu by Molmil
CSL (RBPJ) bound to Notch3 RAM and DNA
Descriptor: DNA (5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*GP*GP*T)-3'), DNA (5'-D(*TP*TP*AP*CP*CP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3'), Neurogenic locus notch homolog protein 3, ...
Authors:Kovall, R.A, Gagliani, E, Hall, D.
Deposit date:2020-04-29
Release date:2021-03-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:PIM-induced phosphorylation of Notch3 promotes breast cancer tumorigenicity in a CSL-independent fashion.
J.Biol.Chem., 296, 2021
5EPN
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BU of 5epn by Molmil
Crystal structure of HCV NS3/4A protease in complex with 5172-mcP1P3 (MK-5172 P1-P3 macrocyclic analogue)
Descriptor: 2-Methyl-2-propanyl {(2R,6S,12Z,13aS,14aR,16aS)-14a-[(cyclopropylsulfonyl)carbamoyl]-2-[(3-ethyl-7-methoxy-2-quinoxalinyl)oxy]-5,16-dioxo-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclop ropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl}carbamate, NS3 protease, SULFATE ION, ...
Authors:Soumana, D.I, Yilmaz, N.K, Ali, A, Prachanronarong, K.L, Aydin, C, Schiffer, C.A.
Deposit date:2015-11-11
Release date:2016-01-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and Thermodynamic Effects of Macrocyclization in HCV NS3/4A Inhibitor MK-5172.
Acs Chem.Biol., 11, 2016
5XFJ
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BU of 5xfj by Molmil
Crystal structure of LY2874455 in complex of FGFR4 gatekeeper mutation (V550M)
Descriptor: 2-[4-[E-2-[5-[(1R)-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-1H-indazol-3-yl]ethenyl]pyrazol-1-yl]ethanol, Fibroblast growth factor receptor 4
Authors:Wu, D, Chen, Y.
Deposit date:2017-04-10
Release date:2018-08-08
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:LY2874455 potently inhibits FGFR gatekeeper mutants and overcomes mutation-based resistance.
Chem. Commun. (Camb.), 54, 2018
6X3F
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BU of 6x3f by Molmil
hEAAT3-IFS-Apo
Descriptor: CHOLINE ION, Excitatory amino acid transporter 3
Authors:Qiu, B, Matthies, D, Boudker, O.
Deposit date:2020-05-21
Release date:2021-03-17
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Cryo-EM structures of excitatory amino acid transporter 3 visualize coupled substrate, sodium, and proton binding and transport.
Sci Adv, 7, 2021
7L4U
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BU of 7l4u by Molmil
Crystal structure of human monoacylglycerol lipase in complex with compound 1h
Descriptor: (5S)-5-(3-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidin-1-yl}-3-oxopropyl)pyrrolidin-2-one, CHLORIDE ION, Monoglyceride lipase
Authors:Qin, L, Lane, W, Skene, R.J, Dougan, D.
Deposit date:2020-12-21
Release date:2021-08-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Design and Synthesis of Novel Spiro Derivatives as Potent and Reversible Monoacylglycerol Lipase (MAGL) Inhibitors: Bioisosteric Transformation from 3-Oxo-3,4-dihydro-2 H -benzo[ b ][1,4]oxazin-6-yl Moiety.
J.Med.Chem., 64, 2021

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PDB entries from 2024-11-13

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