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PDB: 708 results

8B7H
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BU of 8b7h by Molmil
Crystal structure of human Gremlin-1 in complex with Fab
Descriptor: Fab antibody fragment (heavy chain), Fab antibody fragment (light chain), Gremlin-1
Authors:Schulze, M.-S, Martinez-Fleites, C.
Deposit date:2022-09-30
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Discovery of ginisortamab, a potent and novel anti-gremlin-1 antibody in clinical development for the treatment of cancer.
Mabs, 15, 2023
6U9X
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BU of 6u9x by Molmil
Structure of T. brucei MERS1-RNA complex
Descriptor: Mitochondrial edited mRNA stability factor 1, RNA (5'-R(*GP*AP*GP*AP*GP*GP*GP*GP*GP*UP*U)-3')
Authors:Schumacher, M.A.
Deposit date:2019-09-09
Release date:2019-11-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of MERS1, the 5' processing enzyme of mitochondrial mRNAs inTrypanosoma brucei.
Rna, 26, 2020
4YZV
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BU of 4yzv by Molmil
Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Schureck, M.A, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
Deposit date:2015-03-25
Release date:2015-10-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Defining the mRNA recognition signature of a bacterial toxin protein.
Proc.Natl.Acad.Sci.USA, 112, 2015
5HBU
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BU of 5hbu by Molmil
Structure of the E. coli nucleoid occlusion protein SlmA bound to DNA and the C-terminal tail of the cytoskeletal cell division protein FtsZ
Descriptor: DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*TP*CP*AP*C)-3'), FtsZ CTT peptide, Nucleoid occlusion factor SlmA
Authors:Schumacher, M.A, Zeng, W.
Deposit date:2016-01-02
Release date:2016-04-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of the nucleoid occlusion protein SlmA bound to DNA and the C-terminal domain of the cytoskeletal protein FtsZ.
Proc.Natl.Acad.Sci.USA, 113, 2016
4YPB
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BU of 4ypb by Molmil
Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Schureck, M.A, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
Deposit date:2015-03-12
Release date:2015-10-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Defining the mRNA recognition signature of a bacterial toxin protein.
Proc.Natl.Acad.Sci.USA, 112, 2015
8TP8
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BU of 8tp8 by Molmil
Structure of the C. crescentus WYL-activator, DriD, bound to ssDNA and cognate DNA
Descriptor: DNA (5'-D(*AP*TP*AP*CP*GP*AP*CP*AP*GP*TP*AP*AP*CP*TP*GP*TP*CP*GP*TP*AP*T)-3'), DNA (5'-D(*AP*TP*AP*CP*GP*AP*CP*AP*GP*TP*TP*AP*CP*TP*GP*TP*CP*GP*TP*AP*T)-3'), DNA (5'-D(P*GP*TP*C)-3'), ...
Authors:Schumacher, M.A.
Deposit date:2023-08-04
Release date:2023-11-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Structure of the WYL-domain containing transcription activator, DriD, in complex with ssDNA effector and DNA target site.
Nucleic Acids Res., 52, 2024
5J6E
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BU of 5j6e by Molmil
Structure of disulfide crosslinked A. fumigatus FKBP12(V91C)
Descriptor: FK506-binding protein 1A
Authors:Schumacher, M.
Deposit date:2016-04-04
Release date:2016-09-14
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structures of Pathogenic Fungal FKBP12s Reveal Possible Self-Catalysis Function.
Mbio, 7, 2016
5FQL
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BU of 5fql by Molmil
Insights into Hunter syndrome from the structure of iduronate-2- sulfatase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Demydchuk, M, Hill, C.H, Zhou, A, Bunkoczi, G, Stein, P.E, Marchesan, D, Deane, J.E, Read, R.J.
Deposit date:2015-12-11
Release date:2017-01-18
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Insights into Hunter syndrome from the structure of iduronate-2-sulfatase.
Nat Commun, 8, 2017
7X0F
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BU of 7x0f by Molmil
Structure of Pseudomonas NRPS protein, AmbB-TC bound to Ppant
Descriptor: 4'-PHOSPHOPANTETHEINE, AMB antimetabolite synthase AmbB
Authors:ChuYuanKee, M, Bharath, S.R, Song, H.
Deposit date:2022-02-22
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the substrate-bound condensation domains of non-ribosomal peptide synthetase AmbB.
Sci Rep, 12, 2022
7X0E
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Structure of Pseudomonas NRPS protein, AmbB-TC in apo form
Descriptor: AMB antimetabolite synthase AmbB, N-methyl-N-[(2S,3R,4R,5R)-2,3,4,5,6-pentakis(oxidanyl)hexyl]nonanamide
Authors:ChuYuanKee, M, Bharath, S.R, Song, H.
Deposit date:2022-02-22
Release date:2022-07-06
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insights into the substrate-bound condensation domains of non-ribosomal peptide synthetase AmbB.
Sci Rep, 12, 2022
7X17
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BU of 7x17 by Molmil
Structure of Pseudomonas NRPS protein, AmbB-TC bound to Ppant-L-Ala
Descriptor: AMB antimetabolite synthase AmbB, S-[2-[3-[[(2S)-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (2R)-2-azanylpropanethioate
Authors:ChuYuanKee, M, Bharath, S.R, Song, H.
Deposit date:2022-02-23
Release date:2022-07-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the substrate-bound condensation domains of non-ribosomal peptide synthetase AmbB.
Sci Rep, 12, 2022
8TFC
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BU of 8tfc by Molmil
Cryo-EM structure of Methanosarcina mazie glutamine synthetase captured as partial oligomer
Descriptor: Glutamine synthetase
Authors:Schumacher, M.A.
Deposit date:2023-07-09
Release date:2023-11-15
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:M. mazei glutamine synthetase and glutamine synthetase-GlnK1 structures reveal enzyme regulation by oligomer modulation.
Nat Commun, 14, 2023
5KGO
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BU of 5kgo by Molmil
Structure of K. pneumonia MrkH-c-di-GMP complex
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Flagellar brake protein YcgR
Authors:Schumacher, M.
Deposit date:2016-06-13
Release date:2016-08-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:To be published: Structures of K. pneumonia MrkH: dual utilization of the PilZ fold for c-di-GMP and DNA binding by a novel activator of biofilm genes
To Be Published
6CC0
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BU of 6cc0 by Molmil
Crystal structure of QscR bound to C12-homoserine lactone
Descriptor: LuxR family transcriptional regulator, N-[(3S)-2-oxooxolan-3-yl]dodecanamide
Authors:Churchill, M.E.A, Wysoczynski-Horita, C.L.
Deposit date:2018-02-05
Release date:2018-02-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism of agonism and antagonism of the Pseudomonas aeruginosa quorum sensing regulator QscR with non-native ligands.
Mol. Microbiol., 108, 2018
8BAQ
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BU of 8baq by Molmil
E. coli C7 DarT1 in complex with NAD+
Descriptor: 1,2-ETHANEDIOL, DarT ssDNA thymidine ADP-ribosyltransferase family protein, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Schuller, M, Ariza, A.
Deposit date:2022-10-11
Release date:2023-07-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis for the reversible ADP-ribosylation of guanosine bases.
Mol.Cell, 83, 2023
6CF1
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BU of 6cf1 by Molmil
Proteus vulgaris HigA antitoxin structure
Descriptor: Antitoxin HigA, POTASSIUM ION
Authors:Schureck, M.A, Hoffer, E.D, Ei Cho, S, Dunham, C.M.
Deposit date:2018-02-13
Release date:2019-02-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of transcriptional regulation by the HigA antitoxin.
Mol.Microbiol., 111, 2019
6UNX
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BU of 6unx by Molmil
Structure of E. coli FtsZ(L178E)-GTP complex
Descriptor: Cell division protein FtsZ, GUANOSINE-5'-TRIPHOSPHATE
Authors:Schumacher, M.A.
Deposit date:2019-10-13
Release date:2020-02-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:High-resolution crystal structures of Escherichia coli FtsZ bound to GDP and GTP.
Acta Crystallogr.,Sect.F, 76, 2020
9BE2
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BU of 9be2 by Molmil
Structure of the E. coli nucleic associated protein, YejK
Descriptor: Nucleoid-associated protein YejK
Authors:Schumacher, M.A.
Deposit date:2024-04-13
Release date:2024-05-15
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (3.56 Å)
Cite:Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp.
Nucleic Acids Res., 2024
1HY7
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BU of 1hy7 by Molmil
A CARBOXYLIC ACID BASED INHIBITOR IN COMPLEX WITH MMP3
Descriptor: CALCIUM ION, R-2-{[4'-METHOXY-(1,1'-BIPHENYL)-4-YL]-SULFONYL}-AMINO-6-METHOXY-HEX-4-YNOIC ACID, STROMELYSIN-1, ...
Authors:Natchus, M.G, Bookland, R.G, Laufersweiler, M.J, Pikul, S, Almstead, N.G, De, B, Janusz, M.J, Hsieh, L.C, Gu, F, Pokross, M.E, Patel, V.S, Garver, S.M, Peng, S.X, Branch, T.M, King, S.L, Baker, T.R, Foltz, D.J, Mieling, G.E.
Deposit date:2001-01-18
Release date:2002-01-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Development of new carboxylic acid-based MMP inhibitors derived from functionalized propargylglycines.
J.Med.Chem., 44, 2001
4YG1
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BU of 4yg1 by Molmil
HipB-O1-O2 complex/P21212 crystal form
Descriptor: Antitoxin HipB, DNA (48-MER)
Authors:Schumacher, M.A.
Deposit date:2015-02-25
Release date:2015-07-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:HipBA-promoter structures reveal the basis of heritable multidrug tolerance.
Nature, 524, 2015
7OMX
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BU of 7omx by Molmil
Thermus sp. 2.9 DarT in complex with carba-NAD+
Descriptor: CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE, DarT domain-containing protein, THIOCYANATE ION
Authors:Schuller, M, Ariza, A.
Deposit date:2021-05-24
Release date:2021-06-23
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021
7OMV
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BU of 7omv by Molmil
Thermus sp. 2.9 DarT
Descriptor: CHLORIDE ION, DarT domain-containing protein, THIOCYANATE ION
Authors:Schuller, M, Ariza, A.
Deposit date:2021-05-24
Release date:2021-06-23
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021
7ON0
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BU of 7on0 by Molmil
Thermus sp. 2.9 DarT in complex with ADP-ribosylated ssDNA
Descriptor: DNA (5'-D(*AP*TP*GP*TP*C)-3'), DarT domain-containing protein, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Schuller, M, Ariza, A.
Deposit date:2021-05-24
Release date:2021-06-23
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021
7OMY
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BU of 7omy by Molmil
Thermus sp. 2.9 DarT in complex with carba-NAD+ and ssDNA
Descriptor: CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE, DNA (5'-D(*AP*TP*GP*TP*C)-3'), DarT domain-containing protein, ...
Authors:Schuller, M, Ariza, A.
Deposit date:2021-05-24
Release date:2021-06-23
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021
7OMW
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BU of 7omw by Molmil
Thermus sp. 2.9 DarT in complex with NAD+
Descriptor: DarT domain-containing protein, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Schuller, M, Ariza, A.
Deposit date:2021-05-24
Release date:2021-06-23
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021

222624

數據於2024-07-17公開中

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