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PDB: 85 results

5BMU
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BU of 5bmu by Molmil
The crystal structure of the GST-like domains complex of AIMP3-EPRS mutant C92SC105SC123S
Descriptor: Eukaryotic translation elongation factor 1 epsilon-1, Glutamate--tRNA ligase
Authors:Cho, H.J, Kang, B.S.
Deposit date:2015-05-23
Release date:2015-10-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Assembly of Multi-tRNA Synthetase Complex via Heterotetrameric Glutathione Transferase-homology Domains
J.Biol.Chem., 290, 2015
6KQQ
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BU of 6kqq by Molmil
NSD1 SET domain in complex with BT3 and SAM
Descriptor: 2-azanyl-6-[(2-azanyl-4-oxidanyl-1,3-benzothiazol-6-yl)disulfanyl]-1,3-benzothiazol-4-ol, 2-azanyl-6-sulfanyl-1,3-benzothiazol-4-ol, CALCIUM ION, ...
Authors:Cho, H.J, Cierpicki, T.
Deposit date:2019-08-18
Release date:2020-09-02
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Covalent inhibition of NSD1 histone methyltransferase.
Nat.Chem.Biol., 16, 2020
6KQP
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BU of 6kqp by Molmil
NSD1 SET domain in complex with SAM
Descriptor: Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific, S-ADENOSYLMETHIONINE, ...
Authors:Cho, H.J, Cierpicki, T.
Deposit date:2019-08-18
Release date:2020-09-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Covalent inhibition of NSD1 histone methyltransferase.
Nat.Chem.Biol., 16, 2020
6WI7
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BU of 6wi7 by Molmil
RING1B-BMI1 fusion in closed conformation
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, E3 ubiquitin-protein ligase RING2, Polycomb complex protein BMI-1 chimera, ...
Authors:Cho, H.J, Cierpicki, T.
Deposit date:2020-04-08
Release date:2021-04-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Small-molecule inhibitors targeting Polycomb repressive complex 1 RING domain.
Nat.Chem.Biol., 17, 2021
6WI8
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BU of 6wi8 by Molmil
Inhibitor compound-induced confrontational change in Ring1b-Bmi1 domain structure
Descriptor: E3 ubiquitin-protein ligase RING2,Polycomb complex protein BMI-1 chimera, ZINC ION
Authors:Cho, H.J, Cierpicki, T.
Deposit date:2020-04-09
Release date:2021-04-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.092 Å)
Cite:Small-molecule inhibitors targeting Polycomb repressive complex 1 RING domain.
Nat.Chem.Biol., 17, 2021
5VNA
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BU of 5vna by Molmil
Crystal structure of human YEATS domain
Descriptor: 1,2-ETHANEDIOL, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, SULFATE ION, ...
Authors:Cho, H.J, Cierpicki, T.
Deposit date:2017-04-29
Release date:2018-09-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:GAS41 Recognizes Diacetylated Histone H3 through a Bivalent Binding Mode.
ACS Chem. Biol., 13, 2018
5VNB
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BU of 5vnb by Molmil
YEATS in complex with histone H3
Descriptor: 1,2-ETHANEDIOL, H3K23acK27ac peptide, SULFATE ION, ...
Authors:Cho, H.J, Cierpicki, T.
Deposit date:2017-04-29
Release date:2018-09-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:GAS41 Recognizes Diacetylated Histone H3 through a Bivalent Binding Mode.
ACS Chem. Biol., 13, 2018
5YZH
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BU of 5yzh by Molmil
Crystal Structure of Mouse Cytosolic Isocitrate Dehydrogenase
Descriptor: GLYCEROL, Isocitrate dehydrogenase [NADP] cytoplasmic, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Cho, H.J, Kang, B.S.
Deposit date:2017-12-14
Release date:2018-07-04
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.994 Å)
Cite:NADP+-dependent cytosolic isocitrate dehydrogenase provides NADPH in the presence of cadmium due to the moderate chelating effect of glutathione.
J. Biol. Inorg. Chem., 23, 2018
5YZI
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BU of 5yzi by Molmil
Crystal Structure of Mouse Cytosolic Isocitrate Dehydrogenase complexed with Cadmium
Descriptor: CADMIUM ION, Isocitrate dehydrogenase [NADP] cytoplasmic, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Cho, H.J, Kang, B.S.
Deposit date:2017-12-14
Release date:2018-07-04
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.519 Å)
Cite:NADP+-dependent cytosolic isocitrate dehydrogenase provides NADPH in the presence of cadmium due to the moderate chelating effect of glutathione.
J. Biol. Inorg. Chem., 23, 2018
7XKI
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BU of 7xki by Molmil
Human Cx36/GJD2 (N-terminal deletion BRIL-fused mutant) gap junction channel in soybean lipids (D6 symmetry)
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction delta-2 protein,Soluble cytochrome b562
Authors:Cho, H.J, Lee, S.N, Jeong, H, Ryu, B, Lee, H.J, Woo, J.S, Lee, H.H.
Deposit date:2022-04-19
Release date:2023-03-22
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structures of human Cx36/GJD2 neuronal gap junction channel.
Nat Commun, 14, 2023
7XKT
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BU of 7xkt by Molmil
Human Cx36/GJD2 (BRIL-fused mutant) gap junction channel in detergents at 2.2 Angstroms resolution
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, CHOLESTEROL HEMISUCCINATE, ...
Authors:Cho, H.J, Lee, S.N, Jeong, H, Ryu, B, Lee, H.J, Woo, J.S, Lee, H.H.
Deposit date:2022-04-20
Release date:2023-03-22
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Cryo-EM structures of human Cx36/GJD2 neuronal gap junction channel.
Nat Commun, 14, 2023
2WAW
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BU of 2waw by Molmil
crystal structure of Mycobacterium tuberculosis rv0371c homolog from mycobacterium sp. strain JC1
Descriptor: CHLORIDE ION, MOBA RELATE PROTEIN, TRIETHYLENE GLYCOL
Authors:Cho, H.J, Kang, B.S.
Deposit date:2009-02-17
Release date:2010-04-07
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Mycobacterium Tuberculosis Rv0371C Homolog from Mycobacterium Sp. Strain Jc1
To be Published
2WEE
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BU of 2wee by Molmil
Crystal structure of Rv0371c from Mycobacterium tuberculosis H37Rv
Descriptor: GLYCEROL, MOBA-RELATED PROTEIN
Authors:Cho, H.J, Kang, B.S.
Deposit date:2009-03-29
Release date:2010-04-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure of Rv0371C from Mycobacterium Tuberculosis H37Rv
To be Published
2WE9
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BU of 2we9 by Molmil
Crystal structure of Rv0371c from Mycobacterium tuberculosis H37Rv
Descriptor: GLYCEROL, MOBA-RELATED PROTEIN
Authors:Cho, H.J, Kang, B.S.
Deposit date:2009-03-29
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Rv0371C from Mycobacterium Tuberculosis H37Rv
To be Published
8XH8
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BU of 8xh8 by Molmil
Human Cx36/GJD2 (Ala14-deleted mutant) gap junction channel in porcine brain lipids
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction delta-2 protein
Authors:Cho, H.J, Lee, H.H.
Deposit date:2023-12-17
Release date:2024-11-06
Method:ELECTRON MICROSCOPY (2.72 Å)
Cite:Mefloquine-induced conformational shift in Cx36 N-terminal helix leading to channel closure mediated by lipid bilayer.
Nat Commun, 15, 2024
8XGG
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BU of 8xgg by Molmil
Human Cx36/GJD2 gap junction channel in complex with 1-hexanol.
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction delta-2 protein, HEXAN-1-OL
Authors:Cho, H.J, Lee, H.H.
Deposit date:2023-12-15
Release date:2024-11-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Mefloquine-induced conformational shift in Cx36 N-terminal helix leading to channel closure mediated by lipid bilayer.
Nat Commun, 15, 2024
8XGJ
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BU of 8xgj by Molmil
Human Cx36/GJD2 gap junction channel in complex with mefloquine.
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction delta-2 protein, Mefloquine
Authors:Cho, H.J, Lee, H.H.
Deposit date:2023-12-15
Release date:2024-11-06
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Mefloquine-induced conformational shift in Cx36 N-terminal helix leading to channel closure mediated by lipid bilayer.
Nat Commun, 15, 2024
8XGF
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BU of 8xgf by Molmil
Human Cx36/GJD2 gap junction channel in complex with arachidonic acid.
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, ARACHIDONIC ACID, Gap junction delta-2 protein
Authors:Cho, H.J, Lee, H.H.
Deposit date:2023-12-15
Release date:2024-11-06
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Mefloquine-induced conformational shift in Cx36 N-terminal helix leading to channel closure mediated by lipid bilayer.
Nat Commun, 15, 2024
8XGE
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BU of 8xge by Molmil
Human Cx36/GJD2 gap junction channel in porcine brain lipids.
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction delta-2 protein
Authors:Cho, H.J, Lee, H.H.
Deposit date:2023-12-15
Release date:2024-11-06
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Mefloquine-induced conformational shift in Cx36 N-terminal helix leading to channel closure mediated by lipid bilayer.
Nat Commun, 15, 2024
8XGD
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BU of 8xgd by Molmil
Human Cx36/GJD2 gap junction channel with pore-lining N-terminal helices in porcine brain lipids.
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, CHOLESTEROL HEMISUCCINATE, Gap junction delta-2 protein
Authors:Cho, H.J, Lee, H.H.
Deposit date:2023-12-15
Release date:2024-11-06
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Mefloquine-induced conformational shift in Cx36 N-terminal helix leading to channel closure mediated by lipid bilayer.
Nat Commun, 15, 2024
8XH9
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BU of 8xh9 by Molmil
Human Cx36/GJD2 (Ala14 deletion mutant) gap junction channel prepared with mefloquine, showing no bound mefloquine
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction delta-2 protein
Authors:Cho, H.J, Lee, H.H.
Deposit date:2023-12-17
Release date:2024-11-06
Method:ELECTRON MICROSCOPY (2.58 Å)
Cite:Mefloquine-induced conformational shift in Cx36 N-terminal helix leading to channel closure mediated by lipid bilayer.
Nat Commun, 15, 2024
5AIZ
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BU of 5aiz by Molmil
The PIAS-like coactivator Zmiz1 is a direct and selective cofactor of Notch1 in T-cell development and leukemia
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, UNKNOWN ATOM OR ION, ...
Authors:Cho, H.J, Murai, M, Chiang, M, Cierpicki, T.
Deposit date:2015-02-18
Release date:2015-10-28
Last modified:2015-12-02
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Pias-Like Coactivator Zmiz1 is a Direct and Selective Cofactor of Notch1 in T-Cell Development and Leukemia
Immunity, 43, 2015
2WL9
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BU of 2wl9 by Molmil
Crystal structure of catechol 2,3-dioxygenase
Descriptor: 3-METHYLCATECHOL, CATECHOL 2,3-DIOXYGENASE, FE (III) ION, ...
Authors:Cho, H.J, Kim, K.J, Kang, B.S.
Deposit date:2009-06-23
Release date:2010-09-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Substrate-Binding Mechanism of a Type I Extradiol Dioxygenase.
J.Biol.Chem., 285, 2010
2XVJ
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BU of 2xvj by Molmil
Crystal structure of the mutant bacterial flavin containing monooxygenase in complex with indole
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, FLAVIN-CONTAINING MONOOXYGENASE, ...
Authors:Cho, H.J, Kang, B.S.
Deposit date:2010-10-26
Release date:2011-05-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Structural and Functional Analysis of Bacterial Flavin-Containing Monooxygenase Reveals its Ping-Pong-Type Reaction Mechanism.
J.Struct.Biol., 175, 2011
7C0J
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BU of 7c0j by Molmil
Crystal structure of chimeric mutant of GH5 in complex with Z-DNA
Descriptor: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3'), Histone H5,Double-stranded RNA-specific adenosine deaminase
Authors:Choi, H.J, Park, C.H.
Deposit date:2020-05-01
Release date:2020-12-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Dual conformational recognition by Z-DNA binding protein is important for the B-Z transition process.
Nucleic Acids Res., 48, 2020

 

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