Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 170 件

7QG9
DownloadVisualize
BU of 7qg9 by Molmil
Tail tip of siphophage T5 : common core proteins
分子名称: Distal tail protein, L-shaped tail fiber protein p132, Minor tail protein, ...
著者Linares, R, Arnaud, C.A, Effantin, G, Darnault, C, Epalle, N, Boeri Erba, E, Schoehn, G, Breyton, C.
登録日2021-12-07
公開日2022-12-21
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation.
Sci Adv, 9, 2023
6R8N
DownloadVisualize
BU of 6r8n by Molmil
STRUCTURE DETERMINATION OF THE TETRAHEDRAL AMINOPEPTIDASE TET2 FROM P. HORIKOSHII BY USE OF COMBINED SOLID-STATE NMR, SOLUTION-STATE NMR AND EM DATA 4.1 A, FOLLOWED BY REAL_SPACE_REFINEMENT AT 4.1 A
分子名称: Tetrahedral aminopeptidase, ZINC ION
著者Colletier, J.-P, Gauto, D, Estrozi, L, Favier, A, Effantin, G, Schoehn, G, Boisbouvier, J, Schanda, P.
登録日2019-04-02
公開日2019-08-14
最終更新日2023-09-13
実験手法ELECTRON MICROSCOPY (4.1 Å), SOLUTION NMR
主引用文献Integrated NMR and cryo-EM atomic-resolution structure determination of a half-megadalton enzyme complex.
Nat Commun, 10, 2019
7ZHJ
DownloadVisualize
BU of 7zhj by Molmil
Tail tip of siphophage T5 : tip proteins
分子名称: Distal tail protein, L-shaped tail fiber protein p132, Minor tail protein, ...
著者Linares, R, Arnaud, C.A, Effantin, G, Darnault, C, Epalle, N, Boeri Erba, E, Schoehn, G, Breyton, C.
登録日2022-04-06
公開日2023-02-08
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (3.53 Å)
主引用文献Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation.
Sci Adv, 9, 2023
7ZQP
DownloadVisualize
BU of 7zqp by Molmil
Tail tip of siphophage T5 : open cone after interaction with bacterial receptor FhuA
分子名称: Probable baseplate hub protein, Probable tape measure protein
著者Linares, R, Arnaud, C.A, Effantin, G, Darnault, C, Epalle, N, Boeri Erba, E, Schoehn, G, Breyton, C.
登録日2022-05-02
公開日2023-02-08
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation.
Sci Adv, 9, 2023
7ZN2
DownloadVisualize
BU of 7zn2 by Molmil
Tail tip of siphophage T5 : full complex after interaction with its bacterial receptor FhuA
分子名称: Distal tail protein, L-shaped tail fiber protein p132, Minor tail protein, ...
著者Linares, R, Arnaud, C.A, Effantin, G, Darnault, C, Epalle, N, Boeri Erba, E, Schoehn, G, Breyton, C.
登録日2022-04-20
公開日2023-02-08
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (4.29 Å)
主引用文献Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation.
Sci Adv, 9, 2023
7ZN4
DownloadVisualize
BU of 7zn4 by Molmil
Tail tip of siphophage T5 : bent fibre after interaction with its bacterial receptor FhuA
分子名称: Probable baseplate hub protein, Probable central straight fiber
著者Linares, R, Arnaud, C.A, Effantin, G, Darnault, C, Epalle, N, Boeri Erba, E, Schoehn, G, Breyton, C.
登録日2022-04-20
公開日2023-02-08
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (4.32 Å)
主引用文献Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation.
Sci Adv, 9, 2023
7ZQB
DownloadVisualize
BU of 7zqb by Molmil
Tail tip of siphophage T5 : full structure
分子名称: Distal tail protein, L-shaped tail fiber protein p132, Minor tail protein, ...
著者Linares, R, Arnaud, C.A, Effantin, G, Darnault, C, Epalle, N, Boeri Erba, E, Schoehn, G, Breyton, C.
登録日2022-04-29
公開日2023-02-08
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (3.88 Å)
主引用文献Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation.
Sci Adv, 9, 2023
7ZLV
DownloadVisualize
BU of 7zlv by Molmil
Tail tip of siphophage T5 : central fibre protein pb4
分子名称: Probable central straight fiber
著者Linares, R, Arnaud, C.A, Effantin, G, Epalle, N, Boeri Erba, E, Schoehn, G, Breyton, C.
登録日2022-04-15
公開日2023-02-08
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (4.22 Å)
主引用文献Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation.
Sci Adv, 9, 2023
8B14
DownloadVisualize
BU of 8b14 by Molmil
T5 Receptor Binding Protein pb5 in complex with its E. coli receptor FhuA
分子名称: DECYLAMINE-N,N-DIMETHYL-N-OXIDE, FhuA iron-ferrichrome transporter, [(2R,3S,4R,5R,6R)-2-[[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-4-[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-2-carboxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-carboxy-5-oxidanyl-oxan-2-yl]oxymethyl]-5-[[(3R)-3-dodecanoyloxytetradecanoyl]amino]-4-(3-nonanoyloxypropanoyloxy)-6-[[(2R,3S,4R,5R,6R)-3-oxidanyl-4-[(3S)-3-oxidanyltetradecanoyl]oxy-5-[[(3R)-3-oxidanyltridecanoyl]amino]-6-phosphonatooxy-oxan-2-yl]methoxy]oxan-3-yl] phosphate, ...
著者Degroux, S, Effantin, G, Linares, R, Schoehn, G, Breyton, C.
登録日2022-09-09
公開日2023-02-08
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Deciphering Bacteriophage T5 Host Recognition Mechanism and Infection Trigger.
J.Virol., 97, 2023
2CF4
DownloadVisualize
BU of 2cf4 by Molmil
Pyrococcus horikoshii TET1 peptidase can assemble into a tetrahedron or a large octahedral shell
分子名称: COBALT (II) ION, PROTEIN PH0519
著者Vellieux, F.M.D, Schoehn, G, Dura, M.A, Roussel, A, Franzetti, B.
登録日2006-02-15
公開日2006-09-14
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (3.08 Å)
主引用文献An Archaeal Peptidase Assembles Into Two Different Quaternary Structures: A Tetrahedron and a Giant Octahedron.
J.Biol.Chem., 281, 2006
6T7S
DownloadVisualize
BU of 6t7s by Molmil
MexB structure solved by cryo-EM in nanodisc in absence of its protein partners
分子名称: Efflux pump membrane transporter
著者Glavier, M, Schoehn, G, Taveau, J.C, Phan, G, Daury, L, Lambert, O, Broutin, I.
登録日2019-10-23
公開日2020-09-16
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Antibiotic export by MexB multidrug efflux transporter is allosterically controlled by a MexA-OprM chaperone-like complex.
Nat Commun, 11, 2020
6TA6
DownloadVisualize
BU of 6ta6 by Molmil
MexAB assembly of the Pseudomonas MexAB-OprM efflux pump reconstituted in nanodiscs
分子名称: Efflux pump membrane transporter, MexA family multidrug efflux RND transporter periplasmic adaptor subunit, Outer membrane protein OprM
著者Glavier, M, Schoehn, G, Taveau, J.C, Phan, G, Daury, L, Lambert, O, Broutin, I.
登録日2019-10-29
公開日2020-09-16
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Antibiotic export by MexB multidrug efflux transporter is allosterically controlled by a MexA-OprM chaperone-like complex.
Nat Commun, 11, 2020
7M6C
DownloadVisualize
BU of 7m6c by Molmil
Crystal structure of PLA2 from snake venom of peruvian Bothrops atrox
分子名称: Basic phospholipase A2, LAURIC ACID
著者Leonardo, D.A, Chojnowski, G, Simpkin, A, Seifert-Davila, W, Vivas-Ruiz, D.E, Keegan, R, Rigden, D.
登録日2021-03-25
公開日2022-01-12
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献findMySequence: a neural-network-based approach for identification of unknown proteins in X-ray crystallography and cryo-EM
Iucrj, 9, 2022
1C7H
DownloadVisualize
BU of 1c7h by Molmil
CRYSTAL STRUCTURE OF A MUTANT R75A IN KETOSTEROID ISOMERASE FROM PSEDOMONAS PUTIDA BIOTYPE B
分子名称: DELTA-5-3-KETOSTEROID ISOMERASE
著者Nam, G.H, Kim, D.H, Jang, D.S, Choi, G, Ha, N.C, Oh, B.H, Choi, K.Y.
登録日2000-02-19
公開日2000-04-24
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Roles of active site aromatic residues in catalysis by ketosteroid isomerase from Pseudomonas putida biotype B.
Biochemistry, 38, 1999
2OQQ
DownloadVisualize
BU of 2oqq by Molmil
Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana
分子名称: Transcription factor HY5
著者Yoon, M.-K, Kim, H.M, Choi, G, Lee, J.-O, Choi, B.-S.
登録日2007-02-01
公開日2007-03-20
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for the conformational integrity of the Arabidopsis thaliana HY5 leucine zipper homodimer.
J.Biol.Chem., 282, 2007
2FCF
DownloadVisualize
BU of 2fcf by Molmil
The crystal structure of the 7th PDZ domain of MPDZ (MUPP-1)
分子名称: Multiple PDZ domain protein
著者Papagrigoriou, E, Berridge, G, Johansson, C, Colebrook, S, Salah, E, Burgess, N, Smee, C, Savitsky, P, Bray, J, Schoch, G, Phillips, C, Gileadi, C, Soundarajan, M, Yang, X, Elkins, J.M, Gorrec, F, Turnbull, A, Edwards, A, Arrowsmith, C, Weigelt, J, Sundstrom, M, Doyle, D.A, Structural Genomics Consortium (SGC)
登録日2005-12-12
公開日2006-01-17
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Structure of PICK1 and other PDZ domains obtained with the help of self-binding C-terminal extensions.
Protein Sci., 16, 2007
2FNE
DownloadVisualize
BU of 2fne by Molmil
The crystal structure of the 13th PDZ domain of MPDZ
分子名称: Multiple PDZ domain protein
著者Papagrigoriou, E, Berridge, G, Johansson, C, Colebrook, S, Salah, E, Burgess, N, Smee, C, Savitsky, P, Bray, J, Schoch, G, Phillips, C, Gileadi, C, Soundarajan, M, Yang, X, Elkins, J.M, Gorrec, F, Turnbull, A, Edwards, A, Arrowsmith, C, Weigelt, J, Sundstrom, M, Doyle, D.A, Structural Genomics Consortium (SGC)
登録日2006-01-11
公開日2006-01-24
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Structure of PICK1 and other PDZ domains obtained with the help of self-binding C-terminal extensions.
Protein Sci., 16, 2007
7XXN
DownloadVisualize
BU of 7xxn by Molmil
HapR Quadruple mutant, bound to Qstatin
分子名称: 1-(5-bromanylthiophen-2-yl)sulfonylpyrazole, GLYCEROL, Hemagglutinin/protease regulatory protein
著者Basu Choudhury, G, Chaudhari, V, Ray Chaudhuri, S, Datta, S.
登録日2022-05-30
公開日2023-02-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Diversity in the ligand binding pocket of HapR attributes to its uniqueness towards several inhibitors with respect to other homologues - A structural and molecular perspective.
Int.J.Biol.Macromol., 233, 2023
7XY0
DownloadVisualize
BU of 7xy0 by Molmil
HapR Double mutant Y76F, F171C
分子名称: Hemagglutinin/protease regulatory protein
著者Basu Choudhury, G, Chaudhari, V, Ray Chaudhuri, S, Datta, S.
登録日2022-05-31
公開日2023-02-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Diversity in the ligand binding pocket of HapR attributes to its uniqueness towards several inhibitors with respect to other homologues - A structural and molecular perspective.
Int.J.Biol.Macromol., 233, 2023
7Y4J
DownloadVisualize
BU of 7y4j by Molmil
HapR_Triple mutant Y76F, L97I, F171C
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Hemagglutinin/protease regulatory protein
著者Basu Choudhury, G, Chaudhari, V, Ray Chaudhuri, S, Datta, S.
登録日2022-06-14
公開日2023-02-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Diversity in the ligand binding pocket of HapR attributes to its uniqueness towards several inhibitors with respect to other homologues - A structural and molecular perspective.
Int.J.Biol.Macromol., 233, 2023
7XXS
DownloadVisualize
BU of 7xxs by Molmil
HapR mutant I141V
分子名称: Hemagglutinin/protease regulatory protein
著者Basu Choudhury, G, Chaudhari, V, Ray Chaudhuri, S, Datta, S.
登録日2022-05-30
公開日2023-02-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Diversity in the ligand binding pocket of HapR attributes to its uniqueness towards several inhibitors with respect to other homologues - A structural and molecular perspective.
Int.J.Biol.Macromol., 233, 2023
7XXO
DownloadVisualize
BU of 7xxo by Molmil
HapR Native in CHES buffer pH 9.5
分子名称: Hemagglutinin/protease regulatory protein
著者Basu Choudhury, G, Chaudhari, V, Ray Chaudhuri, S, Datta, S.
登録日2022-05-30
公開日2023-02-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.487 Å)
主引用文献Diversity in the ligand binding pocket of HapR attributes to its uniqueness towards several inhibitors with respect to other homologues - A structural and molecular perspective.
Int.J.Biol.Macromol., 233, 2023
7XY5
DownloadVisualize
BU of 7xy5 by Molmil
HapR_Double Mutant with CHES buffer
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Hemagglutinin/protease regulatory protein
著者Basu Choudhury, G, Chaudhari, V, Ray Chaudhuri, S, Datta, S.
登録日2022-05-31
公開日2023-02-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Diversity in the ligand binding pocket of HapR attributes to its uniqueness towards several inhibitors with respect to other homologues - A structural and molecular perspective.
Int.J.Biol.Macromol., 233, 2023
7XYI
DownloadVisualize
BU of 7xyi by Molmil
HapR Quadruple mutant Y76F, L97I, I141V, F171C
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Hemagglutinin/protease regulatory protein
著者Basu Choudhury, G, Chaudhari, V, Ray Chaudhuri, S, Datta, S.
登録日2022-06-01
公開日2023-02-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Diversity in the ligand binding pocket of HapR attributes to its uniqueness towards several inhibitors with respect to other homologues - A structural and molecular perspective.
Int.J.Biol.Macromol., 233, 2023
7XXT
DownloadVisualize
BU of 7xxt by Molmil
HapR Quadruple mutant, bound to IMTVC-212
分子名称: 1-((5-phenylthiophen-2-yl)sulfonyl)-1H-pyrazole, DIMETHYL SULFOXIDE, Hemagglutinin/protease regulatory protein
著者Basu Choudhury, G, Chaudhari, V, Ray Chaudhuri, S, Datta, S.
登録日2022-05-30
公開日2023-02-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Diversity in the ligand binding pocket of HapR attributes to its uniqueness towards several inhibitors with respect to other homologues - A structural and molecular perspective.
Int.J.Biol.Macromol., 233, 2023

222036

件を2024-07-03に公開中

PDB statisticsPDBj update infoContact PDBjnumon