2ZCC
 
 | | Ubiquitin crystallized under high pressure | | 分子名称: | Ubiquitin, ZINC ION | | 著者 | Kitahara, R, Tanaka, T, Yamashita, M, Araya, K, Yokoyama, S, Akasaka, K, Taniguchi, Y, Kato, M. | | 登録日 | 2007-11-08 | | 公開日 | 2007-11-20 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | | 主引用文献 | Structure of Ubiquitin crystallized under high pressure
to be published
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3WY8
 | | Crystal Structure of Protease Anisep from Arthrobacter Nicotinovorans | | 分子名称: | Serine protease | | 著者 | Sone, T, Haraguchi, Y, Kuwahara, A, Ose, T, Takano, M, Abe, A, Tanaka, M, Tanaka, I, Asano, K. | | 登録日 | 2014-08-20 | | 公開日 | 2015-08-26 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Structural characterization reveals the keratinolytic activity of an arthrobacter nicotinovorans protease.
Protein Pept.Lett., 22, 2015
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2Z6J
 | | Crystal Structure of S. pneumoniae Enoyl-Acyl Carrier Protein Reductase (FabK) in Complex with an Inhibitor | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(4-(2-((3-(5-(PYRIDIN-2-YLTHIO)THIAZOL-2-YL)UREIDO)METHYL)-1H-IMIDAZOL-4-YL)PHENOXY)ACETIC ACID, CALCIUM ION, ... | | 著者 | Saito, J, Yamada, M, Watanabe, T, Takeuchi, Y. | | 登録日 | 2007-08-01 | | 公開日 | 2008-04-01 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Crystal structure of enoyl-acyl carrier protein reductase (FabK) from Streptococcus pneumoniae reveals the binding mode of an inhibitor.
Protein Sci., 17, 2008
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3WZ3
 | | Structure of a periplasmic fragment of TraM | | 分子名称: | SULFATE ION, TraM protein | | 著者 | Kuroda, T, Kubori, T, Uchida, Y, Nagai, H, Imada, K. | | 登録日 | 2014-09-18 | | 公開日 | 2015-06-10 | | 最終更新日 | 2016-06-29 | | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | | 主引用文献 | Molecular and structural analysis of Legionella DotI gives insights into an inner membrane complex essential for type IV secretion
Sci Rep, 5, 2015
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3X15
 | | Dimeric Aquifex aeolicus cytochrome c555 | | 分子名称: | Cytochrome c552, HEME C | | 著者 | Yamanaka, M, Nagao, S, Komori, H, Higuchi, Y, Hirota, S. | | 登録日 | 2014-10-29 | | 公開日 | 2015-01-28 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Change in structure and ligand binding properties of hyperstable cytochrome c555 from Aquifex aeolicus by domain swapping
Protein Sci., 24, 2015
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2ZWL
 | | Human factor viia-tissue factor complexed with highly selective peptide inhibitor | | 分子名称: | 2-[[(2R)-1-[[(2S)-5-amino-1-[(4-carbamimidoylphenyl)methylamino]-1,5-dioxo-pentan-2-yl]amino]-3-(1H-indol-3-yl)-1-oxo-propan-2-yl]sulfamoyl]ethanoic acid, CALCIUM ION, Factor VII heavy chain, ... | | 著者 | Kadono, S, Sakamoto, A, Kikuchi, Y, Oh-Eda, M, Yabuta, N, Koga, T, Hattori, K, Shiraishi, T, Haramura, M, Sato, H, Ohta, M, Kozono, T. | | 登録日 | 2008-12-16 | | 公開日 | 2009-01-20 | | 最終更新日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Human factor viia-tissue factor complexed with highly selective peptide inhibitor
To be Published
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3WZ5
 | | Structure of the periplasmic domain of DotI (crystal form II) | | 分子名称: | DotI | | 著者 | Kuroda, T, Kubori, T, Uchida, Y, Nagai, H, Imada, K. | | 登録日 | 2014-09-18 | | 公開日 | 2015-06-10 | | 最終更新日 | 2023-12-06 | | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | | 主引用文献 | Molecular and structural analysis of Legionella DotI gives insights into an inner membrane complex essential for type IV secretion
Sci Rep, 5, 2015
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3X2S
 | | Crystal structure of pyrene-conjugated adenylate kinase | | 分子名称: | Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ... | | 著者 | Fujii, A, Sekiguchi, Y, Matsumura, H, Inoue, T, Chung, W.-S, Hirota, S, Matsuo, T. | | 登録日 | 2014-12-31 | | 公開日 | 2015-04-01 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Excimer Emission Properties on Pyrene-Labeled Protein Surface: Correlation between Emission Spectra, Ring Stacking Modes, and Flexibilities of Pyrene Probes.
Bioconjug.Chem., 26, 2015
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2RQY
 | | Solution structure and dynamics of mouse ARMET | | 分子名称: | Putative uncharacterized protein | | 著者 | Hoseki, J, Sasakawa, H, Yamaguchi, Y, Maeda, M, Kubota, H, Kato, K, Nagata, K. | | 登録日 | 2010-01-26 | | 公開日 | 2010-04-21 | | 最終更新日 | 2022-03-16 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Solution structure and dynamics of mouse ARMET.
Febs Lett., 584, 2010
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2RRN
 | | Solution structure of SecDF periplasmic domain P4 | | 分子名称: | Probable SecDF protein-export membrane protein | | 著者 | Tanaka, T, Tsukazaki, T, Echizen, Y, Nureki, O, Kohno, T. | | 登録日 | 2011-01-30 | | 公開日 | 2011-05-18 | | 最終更新日 | 2024-05-01 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
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3AEY
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3ALB
 | | Cyclic Lys48-linked tetraubiquitin | | 分子名称: | SULFATE ION, ubiquitin | | 著者 | Satoh, T, Sakata, E, Yamamoto, S, Yamaguchi, Y, Sumiyoshi, A, Wakatsuki, S, Kato, K. | | 登録日 | 2010-07-29 | | 公開日 | 2010-08-25 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | | 主引用文献 | Crystal structure of cyclic Lys48-linked tetraubiquitin
Biochem.Biophys.Res.Commun., 2010
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2ZNM
 | | Oxidoreductase NmDsbA3 from Neisseria meningitidis | | 分子名称: | Thiol:disulfide interchange protein DsbA | | 著者 | Vivian, J.P, Scoullar, J, Robertson, A.L, Bottomley, S.P, Horne, J, Chin, Y, Velkov, T, Wielens, J, Thompson, P.E, Piek, S, Byres, E, Beddoe, T, Wilce, M.C.J, Kahler, C, Rossjohn, J, Scanlon, M.J. | | 登録日 | 2008-04-30 | | 公開日 | 2008-08-19 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Structural and Biochemical Characterization of the Oxidoreductase NmDsbA3 from Neisseria meningitidis
J.Biol.Chem., 283, 2008
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2ZP0
 | | Human factor viia-tissue factor complexed with benzylsulfonamide-D-ile-gln-P-aminobenzamidine | | 分子名称: | (2S)-N-[(4-carbamimidoylphenyl)methyl]-2-[[(2R,3R)-3-methyl-2-(phenylmethylsulfonylamino)pentanoyl]amino]pentanediamide, CALCIUM ION, Factor VII heavy chain, ... | | 著者 | Kadono, S, Sakamoto, A, Kikuchi, Y, Oh-eda, M, Yabuta, N, Koga, T, Hattori, K, Shiraishi, T, Haramura, M, Kodama, H. | | 登録日 | 2008-06-20 | | 公開日 | 2008-07-15 | | 最終更新日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | | 主引用文献 | Peptide Mimetic Factor VIIa Inhibitor: Importance of Hydrophilic Pocket in S2 Site to Improve Selectivity aganist Thrombin
LETT.DRUG DES.DISCOVERY, 2, 2005
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2ZC6
 | | Penicillin-binding protein 1A (PBP 1A) acyl-enzyme complex (tebipenem) from Streptococcus pneumoniae | | 分子名称: | (4R,5S)-3-(1-(4,5-dihydrothiazol-2-yl)azetidin-3-ylthio)-5-((2S,3R)-3-hydroxy-1-oxobutan-2-yl)-4-methyl-4,5- dihydro-1H-pyrrole-2-carboxylic acid, Penicillin-binding protein 1A, ZINC ION | | 著者 | Yamada, M, Watanabe, T, Takeuchi, Y. | | 登録日 | 2007-11-02 | | 公開日 | 2008-04-08 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | | 主引用文献 | Crystal Structures of Biapenem and Tebipenem Complexed with Penicillin-Binding Proteins 2X and 1A from Streptococcus pneumoniae
Antimicrob.Agents Chemother., 52, 2008
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3AEX
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3AN1
 | | Crystal structure of rat D428A mutant, urate bound form | | 分子名称: | BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ... | | 著者 | Okamoto, K, Kawaguchi, Y, Eger, B.T, Pai, E.F, Nishino, T. | | 登録日 | 2010-08-27 | | 公開日 | 2010-12-01 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.73 Å) | | 主引用文献 | Crystal Structures of Urate Bound Form of Xanthine Oxidoreductase: Substrate Orientation and Structure of the Key Reaction Intermediate
J.Am.Chem.Soc., 132, 2010
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3AQP
 | | Crystal structure of SecDF, a translocon-associated membrane protein, from Thermus thrmophilus | | 分子名称: | Probable SecDF protein-export membrane protein | | 著者 | Tsukazaki, T, Mori, H, Echizen, Y, Ishitani, R, Fukai, S, Tanaka, T, Perederina, A, Vassylyev, D.G, Kohno, T, Ito, K, Nureki, O. | | 登録日 | 2010-11-16 | | 公開日 | 2011-05-18 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | | 主引用文献 | Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
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2Z2M
 | | Cefditoren-Acylated Penicillin-Binding Protein 2X (PBP2X) from Streptococcus pneumoniae | | 分子名称: | (2R)-2-[(1R)-1-{[(2Z)-2-(2-AMINO-1,3-THIAZOL-4-YL)-2-(METHOXYIMINO)ACETYL]AMINO}-2-OXOETHYL]-5-[(Z)-2-(4-METHYL-1,3-THIAZOL-5-YL)VINYL]-3,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID, Penicillin-binding protein 2X, SULFATE ION | | 著者 | Yamada, M, Watanabe, T, Takeuchi, Y. | | 登録日 | 2007-05-23 | | 公開日 | 2007-09-04 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Crystal Structure of Cefditoren Complexed with Streptococcus pneumoniae Penicillin-Binding Protein 2X: Structural Basis for its High Antimicrobial Activity
Antimicrob.Agents Chemother., 51, 2007
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2ZPC
 | | Crystal structure of the R43L mutant of LolA in the closed form | | 分子名称: | Outer-membrane lipoprotein carrier protein | | 著者 | Takeda, K, Yokota, N, Oguchi, Y, Tokuda, H, Miki, K. | | 登録日 | 2008-07-10 | | 公開日 | 2008-08-05 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | | 主引用文献 | Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
J.Biol.Chem., 283, 2008
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2ZPD
 | | Crystal structure of the R43L mutant of LolA in the open form | | 分子名称: | Outer-membrane lipoprotein carrier protein | | 著者 | Takeda, K, Yokota, N, Oguchi, Y, Tokuda, H, Miki, K. | | 登録日 | 2008-07-10 | | 公開日 | 2008-08-05 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | | 主引用文献 | Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
J.Biol.Chem., 283, 2008
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2ZWN
 | | Crystal structure of the novel two-domain type laccase from a metagenome | | 分子名称: | CHLORIDE ION, COPPER (II) ION, CU-O-CU LINKAGE, ... | | 著者 | Komori, H, Miyazaki, K, Higuchi, Y. | | 登録日 | 2008-12-17 | | 公開日 | 2009-04-07 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | X-ray structure of a two-domain type laccase: a missing link in the evolution of multi-copper proteins
Febs Lett., 583, 2009
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2Z2L
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4D2U
 | | Negative-stain electron microscopy of E. coli ClpB (BAP form bound to ClpP) | | 分子名称: | CHAPERONE PROTEIN CLPB | | 著者 | Carroni, M, Kummer, E, Oguchi, Y, Clare, D.K, Wendler, P, Sinning, I, Kopp, J, Mogk, A, Bukau, B, Saibil, H.R. | | 登録日 | 2014-05-13 | | 公開日 | 2014-06-04 | | 最終更新日 | 2017-08-23 | | 実験手法 | ELECTRON MICROSCOPY (17 Å) | | 主引用文献 | Head-to-Tail Interactions of the Coiled-Coil Domains Regulate Clpb Activity and Cooperation with Hsp70 in Protein Disaggregation.
Elife, 3, 2014
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3WIK
 | | Crystal structure of the CK2alpha/compound10 complex | | 分子名称: | Casein kinase II subunit alpha, N-[5-(4-nitrophenyl)-1,3,4-thiadiazol-2-yl]acetamide | | 著者 | Kinoshita, T, Nakaniwa, T, Sekiguchi, Y, Nakanishi, I. | | 登録日 | 2013-09-18 | | 公開日 | 2014-11-05 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (1.995 Å) | | 主引用文献 | Identification of protein kinase CK2 inhibitors using solvent dipole ordering virtual screening
To be Published
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