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PDB: 772 results

8HX9
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Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae with chorismate
Descriptor: (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid, 4-amino-4-deoxychorismate synthase, FORMIC ACID, ...
Authors:Nakamichi, Y, Watanabe, M.
Deposit date:2023-01-04
Release date:2023-10-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
8HX8
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Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae co-crystallized with chorismate
Descriptor: 4-amino-4-deoxychorismate synthase, MAGNESIUM ION, SUCCINIC ACID, ...
Authors:Nakamichi, Y, Watanabe, M.
Deposit date:2023-01-04
Release date:2023-10-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
6MY1
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BU of 6my1 by Molmil
Solution structure of gomesin at 278 K
Descriptor: gomesin
Authors:Chin, Y.K.-Y, Deplazes, E.
Deposit date:2018-10-31
Release date:2019-11-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The unusual conformation of cross-strand disulfide bonds is critical to the stability of beta-hairpin peptides.
Proteins, 88, 2020
6MY2
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BU of 6my2 by Molmil
Solution structure of gomesin at 298 K
Descriptor: gomesin
Authors:Chin, Y.K.-Y, Deplazes, E.
Deposit date:2018-10-31
Release date:2019-11-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The unusual conformation of cross-strand disulfide bonds is critical to the stability of beta-hairpin peptides.
Proteins, 88, 2020
6MY3
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BU of 6my3 by Molmil
Solution structure of gomesin at 310K
Descriptor: gomesin
Authors:Chin, Y.K.-Y, Deplazes, E.
Deposit date:2018-11-01
Release date:2019-11-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The unusual conformation of cross-strand disulfide bonds is critical to the stability of beta-hairpin peptides.
Proteins, 88, 2020
7DHL
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BU of 7dhl by Molmil
Crystal structure of FGFR3 in complex with pyrimidine derivative
Descriptor: 5-[2-(3,5-dimethoxyphenyl)ethyl]-N-[3-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]pyrimidin-2-amine, Fibroblast growth factor receptor 3
Authors:Echizen, Y, Tateishi, Y, Amano, Y.
Deposit date:2020-11-16
Release date:2021-02-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Synthesis and structure-activity relationships of pyrimidine derivatives as potent and orally active FGFR3 inhibitors with both increased systemic exposure and enhanced in vitro potency.
Bioorg.Med.Chem., 33, 2021
8JOR
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BU of 8jor by Molmil
Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type A crystal
Descriptor: Acyltransferase, PENTAETHYLENE GLYCOL
Authors:Nakamichi, Y, Saika, A, Watanabe, M, Fujii, T, Morita, T.
Deposit date:2023-06-08
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural identification of catalytic His158 of PtMAC2p from Pseudozyma tsukubaensis , an acyltransferase involved in mannosylerythritol lipids formation.
Front Bioeng Biotechnol, 11, 2023
8JOS
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BU of 8jos by Molmil
Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type B crystal
Descriptor: Acyltransferase, CHLORIDE ION, TRIETHYLENE GLYCOL
Authors:Nakamichi, Y, Saika, A, Watanabe, M, Fujii, T, Morita, T.
Deposit date:2023-06-08
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structural identification of catalytic His158 of PtMAC2p from Pseudozyma tsukubaensis , an acyltransferase involved in mannosylerythritol lipids formation.
Front Bioeng Biotechnol, 11, 2023
7F2W
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TbUox in complex with uric acid
Descriptor: URIC ACID, Uricase
Authors:Chiu, Y.C, Hsu, T.S, Huang, C.Y, Hsu, C.H.
Deposit date:2021-06-14
Release date:2022-05-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Structural and biochemical insights into a hyperthermostable urate oxidase from Thermobispora bispora for hyperuricemia and gout therapy.
Int.J.Biol.Macromol., 188, 2021
5WLX
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Solution structure of kappa-theraphotoxin-Aa1a
Descriptor: Kappa-theraphotoxin-Aa1a
Authors:Chin, Y.K.Y, Ma, L, King, G.F.
Deposit date:2017-07-28
Release date:2018-08-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Novel venom-derived inhibitors of the human EAG channel, a putative antiepileptic drug target.
Biochem. Pharmacol., 158, 2018
7DTM
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BU of 7dtm by Molmil
Crystal structure of metallo-beta-lactamase IMP-1 in complex with citrate.
Descriptor: CITRATE ANION, Metallo-beta-lactamase type 2, ZINC ION
Authors:Yamaguchi, Y, Kurosaki, H.
Deposit date:2021-01-06
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of Metallo-beta-Lactamase (IMP-1) and Its D120E Mutant in Complexes with Citrate and the Inhibitory Effect of the Benzyl Group in Citrate Monobenzyl Ester.
J.Med.Chem., 64, 2021
7DTN
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Crystal structure of metallo-beta-lactamase IMP-1 mutant (D120E) in complex with citrate.
Descriptor: 2-(2-ETHOXYETHOXY)ETHANOL, CITRATE ANION, Metallo-beta-lactamase type 2, ...
Authors:Yamaguchi, Y, Kurosaki, H.
Deposit date:2021-01-06
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structures of Metallo-beta-Lactamase (IMP-1) and Its D120E Mutant in Complexes with Citrate and the Inhibitory Effect of the Benzyl Group in Citrate Monobenzyl Ester.
J.Med.Chem., 64, 2021
2N8F
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BU of 2n8f by Molmil
Chemical shift assignments and structure calculation of spider toxin pi-hexatoxin-Hi1a
Descriptor: spider toxin pi-hexatoxin-Hi1a
Authors:Chin, Y.K.-Y, Pineda, S.S, Mobli, M, King, G.F.
Deposit date:2015-10-13
Release date:2016-10-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Potent neuroprotection after stroke afforded by a double-knot spider-venom peptide that inhibits acid-sensing ion channel 1a.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3GYX
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BU of 3gyx by Molmil
Crystal structure of adenylylsulfate reductase from Desulfovibrio gigas
Descriptor: Adenylylsulfate Reductase, FLAVIN-ADENINE DINUCLEOTIDE, IRON/SULFUR CLUSTER
Authors:Chiang, Y.-L, Hsieh, Y.-C, Liu, E.-H, Liu, M.-Y, Chen, C.-J.
Deposit date:2009-04-06
Release date:2009-12-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of Adenylylsulfate reductase from Desulfovibrio gigas suggests a potential self-regulation mechanism involving the C terminus of the beta-subunit
J.Bacteriol., 191, 2009
2NBC
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BU of 2nbc by Molmil
Resonance assignments and structure determination of poneritoxin, omega-PONTX-Ae1a, from Anochetus emarginatus
Descriptor: poneritoxin
Authors:Chin, Y.K.-Y, Touchard, A, King, G.F.
Deposit date:2016-02-03
Release date:2017-01-11
Method:SOLUTION NMR
Cite:Isolation and characterization of a structurally unique beta-hairpin venom peptide from the predatory ant Anochetus emarginatus.
Biochim.Biophys.Acta, 1860, 2016
2N8K
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BU of 2n8k by Molmil
Chemical Shift Assignments and Structure Determination for spider toxin, U33-theraphotoxin-Cg1c
Descriptor: U33-theraphotoxin-Cg1b
Authors:Chin, Y.K.-Y, Pineda, S.S, Mobli, M, King, G.F.
Deposit date:2015-10-20
Release date:2016-08-31
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene.
Proc.Natl.Acad.Sci.USA, 117, 2020
6KRL
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BU of 6krl by Molmil
Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Nakamichi, Y, Watanabe, M, Inoue, H.
Deposit date:2019-08-22
Release date:2020-06-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Substrate recognition by a bifunctional GH30-7 xylanase B from Talaromyces cellulolyticus.
Febs Open Bio, 10, 2020
6LFT
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BU of 6lft by Molmil
Poa1p S30A mutant in complex with ADP-ribose
Descriptor: ACETATE ION, ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose 1''-phosphate phosphatase
Authors:Chiu, Y.C, Hsu, C.H.
Deposit date:2019-12-03
Release date:2020-12-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Expanding the Substrate Specificity of Macro Domains toward 3''-Isomer of O-Acetyl-ADP-ribose
Acs Catalysis, 11, 2021
6LFS
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BU of 6lfs by Molmil
Poa1p H23A mutant in complex with ADP-ribose
Descriptor: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose 1''-phosphate phosphatase
Authors:Chiu, Y.C, Hsu, C.H.
Deposit date:2019-12-03
Release date:2020-12-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Expanding the Substrate Specificity of Macro Domains toward 3''-Isomer of O-Acetyl-ADP-ribose
Acs Catalysis, 11, 2021
6LFQ
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Crystal structure of Poa1p in apo form
Descriptor: ADP-ribose 1''-phosphate phosphatase, GLYCEROL
Authors:Chiu, Y.C, Hsu, C.H.
Deposit date:2019-12-03
Release date:2020-12-09
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.359 Å)
Cite:Expanding the Substrate Specificity of Macro Domains toward 3''-Isomer of O-Acetyl-ADP-ribose
Acs Catalysis, 11, 2021
5X6Y
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BU of 5x6y by Molmil
Crystal structure of Rice Dwarf Virus P5 in complex with S-adenosylmethionine
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, S-ADENOSYLMETHIONINE, ...
Authors:Nakamichi, Y, Higashiura, A, Nakagawa, A.
Deposit date:2017-02-23
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
6LFR
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BU of 6lfr by Molmil
Poa1p in complex with ADP-ribose
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose 1''-phosphate phosphatase
Authors:Chiu, Y.C, Hsu, C.H.
Deposit date:2019-12-03
Release date:2020-12-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Expanding the Substrate Specificity of Macro Domains toward 3''-Isomer of O-Acetyl-ADP-ribose
Acs Catalysis, 11, 2021
2M32
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BU of 2m32 by Molmil
Alpha-1 integrin I-domain in complex with GLOGEN triple helical peptide
Descriptor: GLOGEN peptide, Integrin alpha-1, MAGNESIUM ION
Authors:Chin, Y, Headey, S, Mohanty, B, McEwan, P, Swarbrick, J, Mulhern, T, Emsley, J, Simpson, J, Scanlon, M.
Deposit date:2013-01-07
Release date:2013-11-06
Last modified:2014-02-12
Method:SOLUTION NMR
Cite:The Structure of Integrin alpha 1I Domain in Complex with a Collagen-mimetic Peptide.
J.Biol.Chem., 288, 2013
6M5Z
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BU of 6m5z by Molmil
Catalytic domain of GH30 xylanase C from Talaromyces cellulolyticus
Descriptor: ACETATE ION, GH30 Xylanase C, GLYCEROL, ...
Authors:Nakamichi, Y, Watanabe, M, Inoue, H.
Deposit date:2020-03-12
Release date:2021-01-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of GH30-7 endoxylanase C from the filamentous fungus Talaromyces cellulolyticus.
Acta Crystallogr.,Sect.F, 76, 2020
3VSN
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BU of 3vsn by Molmil
The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
Descriptor: GLYCEROL, IODIDE ION, Occlusion-derived virus envelope protein E66
Authors:Kawaguchi, Y, Sugiura, N, Kimata, K, Kimura, M, Kakuta, Y.
Deposit date:2012-04-27
Release date:2013-05-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published

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PDB entries from 2024-07-10

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