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PDB: 808 件

7EEN
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BU of 7een by Molmil
Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
分子名称: CALCIUM ION, DNA/RNA (27-MER)
著者Kondo, J, Sekiguchi, S.
登録日2021-03-19
公開日2022-03-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
To Be Published
3WXO
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BU of 3wxo by Molmil
Crystal structure of isoniazid bound KatG catalase peroxidase from Synechococcus elongatus PCC7942
分子名称: Catalase-peroxidase, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ...
著者Wada, K, Tada, T, Kamachi, S.
登録日2014-08-04
公開日2015-01-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献The crystal structure of isoniazid-bound KatG catalase-peroxidase from Synechococcus elongatus PCC7942.
Febs J., 282, 2015
3WNU
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BU of 3wnu by Molmil
The crystal structure of catalase-peroxidase, KatG, from Synechococcus PCC7942
分子名称: Catalase-peroxidase, HEME B/C, SODIUM ION
著者Tada, T, Wada, K, Kamachi, S.
登録日2013-12-17
公開日2014-03-12
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The 2.2 angstrom resolution structure of the catalase-peroxidase KatG from Synechococcus elongatus PCC7942.
Acta Crystallogr.,Sect.F, 70, 2014
2N3G
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BU of 2n3g by Molmil
Solution structure of DRB4 dsRBD1 (viz. DRB4(1-72))
分子名称: Double-stranded RNA-binding protein 4
著者Deshmukh, M, Chiliveri, S.
登録日2015-05-29
公開日2016-09-07
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献DRB4 dsRBD1 drives dsRNA recognition in Arabidopsis thaliana tasi/siRNA pathway.
Nucleic Acids Res., 45, 2017
7BPF
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BU of 7bpf by Molmil
Structure of L-threoninol nucleic acid - RNA complex
分子名称: L-aTNA (3'-(*GP*CP*AP*GP*CP*AP*GP*C)-1'), RNA (5'-R(*GP*CP*UP*GP*CP*(5BU)P*GP*C)-3')
著者Kamiya, Y, Satoh, T, Kodama, A, Suzuki, T, Uchiyama, S, Kato, K, Asanuma, H.
登録日2020-03-22
公開日2020-11-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Intrastrand backbone-nucleobase interactions stabilize unwound right-handed helical structures of heteroduplexes of L-aTNA/RNA and SNA/RNA
Commun Chem, 2020
7UJZ
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BU of 7ujz by Molmil
[T:Cd2+/Hg2+:T--pH 11] Metal-mediated DNA base pair in tensegrity triangle
分子名称: CADMIUM ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), ...
著者Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.94 Å)
主引用文献Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals.
J.Am.Chem.Soc., 145, 2023
7UK0
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BU of 7uk0 by Molmil
[T:Au+:T--pH 11 w/ HgCl2] Metal-mediated DNA base pair in tensegrity triangle
分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ...
著者Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (4.36 Å)
主引用文献Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals.
J.Am.Chem.Soc., 145, 2023
7UL8
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[T:Au+:T--pH 11] Metal-mediated DNA base pair in tensegrity triangle
分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ...
著者Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
登録日2022-04-04
公開日2023-04-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (4.22 Å)
主引用文献Metal-Mediated DNA Nanotechnology in 3D: Structural Library by Templated Diffraction.
Adv Mater, 35, 2023
6GYM
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BU of 6gym by Molmil
Structure of a yeast closed complex with distorted DNA (CCdist)
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P.
登録日2018-06-30
公開日2018-12-05
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (6.7 Å)
主引用文献Promoter Distortion and Opening in the RNA Polymerase II Cleft.
Mol. Cell, 73, 2019
1XKT
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BU of 1xkt by Molmil
Human fatty acid synthase: Structure and substrate selectivity of the thioesterase domain
分子名称: fatty acid synthase
著者Chakravarty, B, Gu, Z, Chirala, S.S, Wakil, S.J, Quiocho, F.A.
登録日2004-09-29
公開日2004-10-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Human fatty acid synthase: structure and substrate selectivity of the thioesterase domain.
Proc.Natl.Acad.Sci.Usa, 101, 2004
3X16
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BU of 3x16 by Molmil
Crystal structure of the catalase-peroxidase KatG W78F mutant from Synechococcus elongatus PCC7942
分子名称: Catalase-peroxidase, HEME B/C, SODIUM ION
著者Tada, T, Wada, K, Kamachi, S.
登録日2014-10-30
公開日2014-12-24
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Crystal structure of the catalase-peroxidase KatG W78F mutant from Synechococcus elongatus PCC7942 in complex with the antitubercular pro-drug isoniazid.
Febs Lett., 589, 2015
5ZNO
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BU of 5zno by Molmil
Crystal structure of PET-degrading cutinase Cut190 S176A/S226P/R228S/ mutant in Ca(2+)-bound state
分子名称: Alpha/beta hydrolase family protein, CALCIUM ION, GLYCEROL
著者Numoto, N, Inaba, S, Yamagami, Y, Kamiya, N, Bekker, G.J, Ishii, K, Uchiyama, S, Kawai, F, Ito, N, Oda, M.
登録日2018-04-10
公開日2018-09-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.60264349 Å)
主引用文献Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle.
Biochemistry, 57, 2018
3ZFP
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BU of 3zfp by Molmil
Crystal structure of product-like, processed N-terminal protease Npro with internal His-Tag
分子名称: CHLORIDE ION, MONOTHIOGLYCEROL, N-TERMINAL PROTEASE NPRO
著者Zogg, T, Sponring, M, Schindler, S, Koll, M, Schneider, R, Brandstetter, H, Auer, B.
登録日2012-12-12
公開日2013-05-15
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Crystal Structures of the Viral Protease Npro Imply Distinct Roles for the Catalytic Water in Catalysis
Structure, 21, 2013
3ZFT
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BU of 3zft by Molmil
Crystal structure of product-like, processed N-terminal protease Npro at pH 3
分子名称: CHLORIDE ION, MONOTHIOGLYCEROL, N-TERMINAL PROTEASE NPRO
著者Zogg, T, Sponring, M, Schindler, S, Koll, M, Schneider, R, Brandstetter, H, Auer, B.
登録日2012-12-12
公開日2013-05-15
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structures of the Viral Protease Npro Imply Distinct Roles for the Catalytic Water in Catalysis
Structure, 21, 2013
3VS9
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BU of 3vs9 by Molmil
Crystal structure of type III PKS ArsC mutant
分子名称: SODIUM ION, TETRAETHYLENE GLYCOL, Type III polyketide synthase
著者Satou, R, Miyanaga, A, Ozawa, H, Funa, N, Miyazono, K, Tanokura, M, Ohnishi, Y, Horinouchi, S.
登録日2012-04-23
公開日2013-04-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural basis for cyclization specificity of two Azotobacter type III polyketide synthases: a single amino acid substitution reverses their cyclization specificity
J.Biol.Chem., 288, 2013
5ZRS
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BU of 5zrs by Molmil
Crystal structure of PET-degrading cutinase Cut190 S176A/S226P/R228S mutant in monoethyl adipate bound state
分子名称: 6-ethoxy-6-oxohexanoic acid, Alpha/beta hydrolase family protein, CALCIUM ION, ...
著者Numoto, N, Kamiya, N, Bekker, G.J, Yamagami, Y, Inaba, S, Ishii, K, Uchiyama, S, Kawai, F, Ito, N, Oda, M.
登録日2018-04-25
公開日2018-09-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle.
Biochemistry, 57, 2018
3ZFU
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BU of 3zfu by Molmil
Crystal structure of substrate-like, unprocessed N-terminal protease Npro mutant S169P with sulphate
分子名称: MONOTHIOGLYCEROL, N-TERMINAL PROTEASE NPRO, SULFATE ION
著者Zogg, T, Sponring, M, Schindler, S, Koll, M, Schneider, R, Brandstetter, H, Auer, B.
登録日2012-12-12
公開日2013-05-15
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Crystal Structures of the Viral Protease Npro Imply Distinct Roles for the Catalytic Water in Catalysis
Structure, 21, 2013
3ZFO
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BU of 3zfo by Molmil
Crystal structure of substrate-like, unprocessed N-terminal protease Npro mutant S169P
分子名称: CHLORIDE ION, HYDROXIDE ION, MONOTHIOGLYCEROL, ...
著者Zogg, T, Sponring, M, Schindler, S, Koll, M, Schneider, R, Brandstetter, H, Auer, B.
登録日2012-12-12
公開日2013-05-15
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Crystal Structures of the Viral Protease Npro Imply Distinct Roles for the Catalytic Water in Catalysis
Structure, 21, 2013
3RGW
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Crystal structure at 1.5 A resolution of an H2-reduced, O2-tolerant hydrogenase from Ralstonia eutropha unmasks a novel iron-sulfur cluster
分子名称: FE3-S4 CLUSTER, FE4-S3 CLUSTER, IRON/SULFUR CLUSTER, ...
著者Scheerer, P, Fritsch, J, Frielingsdorf, S, Kroschinsky, S, Friedrich, B, Lenz, O, Spahn, C.M.T.
登録日2011-04-10
公開日2011-10-26
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The crystal structure of an oxygen-tolerant hydrogenase uncovers a novel iron-sulphur centre.
Nature, 479, 2011
2N3H
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BU of 2n3h by Molmil
Solution structure of DRB4 dsRBD2 (viz. DRB4(81-151))
分子名称: Double-stranded RNA-binding protein 4
著者Deshmukh, M, Chiliveri, S.
登録日2015-05-29
公開日2016-09-07
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献DRB4 dsRBD1 drives dsRNA recognition in Arabidopsis thaliana tasi/siRNA pathway.
Nucleic Acids Res., 45, 2017
5ZQT
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BU of 5zqt by Molmil
Crystal structure of Oryza sativa hexokinase 6
分子名称: Hexokinase-6, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Matsudaira, K, Mochizuki, S, Yoshida, H, Kamitori, S, Akimitsu, K.
登録日2018-04-20
公開日2019-04-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Crystal structure of Oryza sativa hexokinase 6
To Be Published
2N3F
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BU of 2n3f by Molmil
Solution structure of both dsRBDs of DRB4 along with linker (viz. DRB4(1-153))
分子名称: Double-stranded RNA-binding protein 4
著者Deshmukh, M, Chiliveri, S.
登録日2015-05-29
公開日2016-09-07
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献DRB4 dsRBD1 drives dsRNA recognition in Arabidopsis thaliana tasi/siRNA pathway.
Nucleic Acids Res., 45, 2017
3ZFR
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BU of 3zfr by Molmil
Crystal structure of product-like, processed N-terminal protease Npro with iridium
分子名称: HYDROXIDE ION, IRIDIUM (III) ION, MONOTHIOGLYCEROL, ...
著者Zogg, T, Sponring, M, Schindler, S, Koll, M, Schneider, R, Brandstetter, H, Auer, B.
登録日2012-12-12
公開日2013-05-15
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structures of the Viral Protease Npro Imply Distinct Roles for the Catalytic Water in Catalysis
Structure, 21, 2013
3ZFQ
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Crystal structure of product-like, processed N-terminal protease Npro with mercury
分子名称: MERCURY (II) ION, MONOTHIOGLYCEROL, N-TERMINAL PROTEASE NPRO
著者Zogg, T, Sponring, M, Schindler, S, Koll, M, Schneider, R, Brandstetter, H, Auer, B.
登録日2012-12-12
公開日2013-05-15
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Crystal Structures of the Viral Protease Npro Imply Distinct Roles for the Catalytic Water in Catalysis
Structure, 21, 2013
3ZFN
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Crystal structure of product-like, processed N-terminal protease Npro
分子名称: CHLORIDE ION, MONOTHIOGLYCEROL, N-TERMINAL PROTEASE NPRO
著者Zogg, T, Sponring, M, Schindler, S, Koll, M, Schneider, R, Brandstetter, H, Auer, B.
登録日2012-12-12
公開日2013-05-15
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal Structures of the Viral Protease Npro Imply Distinct Roles for the Catalytic Water in Catalysis
Structure, 21, 2013

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