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PDB: 77 results

3GNK
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BU of 3gnk by Molmil
Calcium bound to the Holliday junction sequence d(TCGGCGCCGA)4
Descriptor: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3', CALCIUM ION, SODIUM ION
Authors:Naseer, A, Cardin, C.J.
Deposit date:2009-03-17
Release date:2009-03-31
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Calcium bound to the Holliday junction sequence d(TCGGCGCCGA)4
To be Published
3GOO
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BU of 3goo by Molmil
Strontium bound to the Holliday junction sequence d(TCGGCGCCGA)4
Descriptor: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3', STRONTIUM ION
Authors:Naseer, A, Cardin, C.J.
Deposit date:2009-03-19
Release date:2009-04-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Strontium bound to the Holliday junction sequence d(TCGGCGCCGA)4
To be Published
2GB9
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BU of 2gb9 by Molmil
d(CGTACG)2 crosslinked bis-acridine complex
Descriptor: 5'-D(*CP*GP*TP*AP*CP*G)-3', 9,9'-(HEXANE-1,6-DIYLDIIMINO)BIS{N-[2-(DIMETHYLAMINO)ETHYL]ACRIDINE-4-CARBOXAMIDE}, STRONTIUM ION
Authors:Hopcroft, N.H, Brogden, A.L, Searcey, M, Cardin, C.J.
Deposit date:2006-03-10
Release date:2006-04-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:X-ray crystallographic study of DNA duplex cross-linking: simultaneous binding to two d(CGTACG)2 molecules by a bis(9-aminoacridine-4-carboxamide) derivative.
Nucleic Acids Res., 34, 2006
3GOJ
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BU of 3goj by Molmil
Barium bound to the Holliday sequence d(CCGGCGCCGG)4
Descriptor: 5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3', BARIUM ION
Authors:Naseer, A, Cardin, C.J.
Deposit date:2009-03-19
Release date:2009-04-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Barium bound to the Holliday junction structure
To be Published
3GOM
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BU of 3gom by Molmil
Barium bound to the Holliday junction sequence d(TCGGCGCCGA)4
Descriptor: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3', BARIUM ION
Authors:Naseer, A, Cardin, C.J.
Deposit date:2009-03-19
Release date:2009-04-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure determination of an intercalating ruthenium dipyridophenazine complex which kinks DNA by semiintercalation of a tetraazaphenanthrene ligand.
Proc.Natl.Acad.Sci.USA, 108, 2011
2GWA
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BU of 2gwa by Molmil
Crystal Structure of a Complex Formed Between the DNA Holliday Junction and a Bis-Acridine Molecule.
Descriptor: 5'-D(*Tp*Cp*Gp*Gp*Tp*Ap*Cp*Cp*Gp*A)-3', 9,9'-(HEXANE-1,6-DIYLDIIMINO)BIS{N-[2-(DIMETHYLAMINO)ETHYL]ACRIDINE-4-CARBOXAMIDE}, SPERMINE
Authors:Brogden, A.L, Hopcroft, N.H, Cardin, C.J, Searcey, M.
Deposit date:2006-05-04
Release date:2006-06-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Ligand bridging of the DNA Holliday junction: molecular recognition of a stacked-X four-way junction by a small molecule.
Angew.Chem.Int.Ed.Engl., 46, 2007
2GJB
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BU of 2gjb by Molmil
Crosslinking of DNA duplexes: X-ray crystal structure of an unsubstituted bisacridine with the oligonucleotide d(CGTACG)
Descriptor: 5'-D(*CP*GP*TP*AP*CP*GP*)-3', N-ACRIDIN-9-YL-N'-[3-(ACRIDIN-9-YLAMINO)PROPYL]PROPANE-1,3-DIAMINE, POTASSIUM ION
Authors:Gan, Y, Cardin, C.J, Denny, W.A.
Deposit date:2006-03-30
Release date:2007-04-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crosslinking of DNA duplexes: X-ray crystal structure of an unsubstituted bisacridine with oligonucleotide d(CGTACG)
To be Published
6RSP
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BU of 6rsp by Molmil
L-[Ru(phen)2(11-NO2-dppz)]2+ bound to the Oligonucleotide sequence d(TCGGCGCCGA)
Descriptor: BARIUM ION, DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'), Ruthenium (bis-(phenanthroline)) (11-nitro-dipyridophenazine)
Authors:McQuaid, K.T, Hall, J.P, Cardin, C.J.
Deposit date:2019-05-21
Release date:2020-07-08
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:L-[Ru(phen)2(11-NO2-dppz)]2+ bound to the Oligonucleotide sequence d(TCGGCGCCGA)
To Be Published
6RSO
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BU of 6rso by Molmil
Structure of [Ru(phen)2(10-NO2-dppz)]2+ bound to the DNA sequence d(TCGGCGCCGA)
Descriptor: BARIUM ION, DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'), Ruthenium (bis-(phenanthroline)) (10-nitro-dipyridophenazine)
Authors:McQuaid, K.T, Hall, J.P, Cardin, C.J.
Deposit date:2019-05-21
Release date:2020-07-08
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structure of [Ru(phen)2(10-NO2-dppz)]2+ bound to the DNA sequence d(TCGGCGCCGA)
To Be Published
367D
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BU of 367d by Molmil
1.2 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/5-BROMO-9-AMINO-DACA COMPLEX
Descriptor: 5'-D(*CP*GP*(BRU)P*AP*CP*G)-3', 5-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE, BROMIDE ION
Authors:Todd, A.K, Adams, A, Thorpe, J.H, Denny, W.A, Cardin, C.J.
Deposit date:1997-12-19
Release date:2003-03-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Major groove binding and 'DNA-induced' fit in the intercalation of a derivative of the mixed topoisomerase I/II poison N-(2-(dimethlyamino)ethyl)acridine-4-carboxamide (DACA) into DNA: X-ray structure complexed to d(CG(5Br-U)ACG)2 at 1.3-angstrom resolution
J.Med.Chem., 42, 1999
344D
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BU of 344d by Molmil
DETERMINATION BY MAD-DM OF THE STRUCTURE OF THE DNA DUPLEX D(ACGTACG(5-BRU))2 AT 1.46A AND 100K
Descriptor: DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*(BRU))-3')
Authors:Todd, A.R, Adams, A, Powell, H.R, Cardin, C.J.
Deposit date:1997-08-04
Release date:1997-09-26
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Determination by MAD-DM of the structure of the DNA duplex d[ACGTACG(5-BrU)]2 at 1.46 A and 100 K.
Acta Crystallogr.,Sect.D, 55, 1999
366D
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BU of 366d by Molmil
1.3 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/6-BROMO-9-AMINO-DACA COMPLEX
Descriptor: 6-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE, DNA (5'-D(*CP*GP*(BRU)P*AP*CP*G)-3')
Authors:Todd, A.K, Adams, A, Thorpe, J.H, Denny, W.A, Cardin, C.J.
Deposit date:1997-12-19
Release date:1999-04-06
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Major groove binding and 'DNA-induced' fit in the intercalation of a derivative of the mixed topoisomerase I/II poison N-(2-(dimethylamino)ethyl)acridine-4-carboxamide (DACA) into DNA: X-ray structure complexed to d(CG(5-BrU)ACG)2 at 1.3-A resolution.
J.Med.Chem., 42, 1999
4IZQ
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BU of 4izq by Molmil
GGGCATGCCC in the A-DNA Form
Descriptor: DNA (5'-D(*GP*GP*GP*CP*AP*TP*GP*CP*CP*C)-3')
Authors:Hall, J.P, Ruiz-Morte, S, Murray, C.A, Cardin, C.J.
Deposit date:2013-01-30
Release date:2014-02-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:GGGCATGCCC in the A-DNA Form
To be Published
5IP8
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BU of 5ip8 by Molmil
Lambda-Ru(TAP)2dppz bound to d(CCGGCTCCGG)
Descriptor: BARIUM ION, DNA (5'-D(*CP*CP*GP*GP*AP*GP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*CP*TP*CP*CP*GP*G)-3'), ...
Authors:Souter, J.E, Hall, J.P, Cardin, C.J.
Deposit date:2016-03-09
Release date:2017-03-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Sequence specific binding of light activated Ru-polypyridyls
To Be Published
5IU5
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BU of 5iu5 by Molmil
Lambda-[Ru(TAP)2(dppz)]2+ bound to d(TCGGCICCGA)2
Descriptor: BARIUM ION, DNA (5'-D(*TP*CP*GP*GP*CP*IP*CP*CP*GP*A)-3'), Ru(tap)2(dppz) complex
Authors:Hall, J.P, Cardin, C.J.
Deposit date:2016-03-17
Release date:2017-06-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Unexpected enhancement of sensitised photo-oxidation by a Ru(II) complex on replacement of guanine with inosine in DNA
To Be Published
8PIP
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BU of 8pip by Molmil
DNA triplex structure with Polypyridyl Ruthenium Complexes
Descriptor: CHLORIDE ION, DNA (31-MER), Delta-Ru(phen)2(dppz) complex, ...
Authors:Abdullrahman, A, Cardin, C.J, Hall, J.P.
Deposit date:2023-06-22
Release date:2024-07-10
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:DNA triplex structure with bound ruthenium polypyridyl complexes
To Be Published
8PJL
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BU of 8pjl by Molmil
DNA duplex forming base triplets in minor groove
Descriptor: DNA (5'-D(*AP*AP*CP*TP*GP*AP*GP*AP*GP*AP*CP*GP*TP*A)-3'), DNA (5'-D(*TP*AP*CP*GP*TP*CP*TP*CP*TP*CP*AP*GP*TP*C)-3'), MAGNESIUM ION, ...
Authors:Abdullrahman, A, Cardin, C.J, Hall, J.P.
Deposit date:2023-06-23
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:DNA duplex with triplets bases in minor groove
To Be Published
5IWJ
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BU of 5iwj by Molmil
LAmbda-[Ru(TAP)2(dppz)]2+ bound to d(CCGGGCCCGG
Descriptor: BARIUM ION, DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3'), Ru(tap)2(dppz) complex
Authors:Souter, J.E, Hall, J.P, Cardin, C.J.
Deposit date:2016-03-22
Release date:2017-04-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:The binding specificity of RuTAP2dppz
To Be Published
4E95
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BU of 4e95 by Molmil
Lambda-[Ru(TAP)2(dppz-(Me)2)]2+ bound to CCGGATCCGG
Descriptor: (11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+), 5'-D(*CP*CP*GP*GP*AP*TP*CP*CP*GP*G)-3', BARIUM ION
Authors:Hall, J.P, Cardin, C.J.
Deposit date:2012-03-20
Release date:2013-03-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The effects of disubstitution on the binding of ruthenium complexes to DNA
Thesis, University of Reading, 2014
4E8X
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BU of 4e8x by Molmil
Lambda-[Ru(TAP)2(dppz-(Me)2)]2+ bound to d(CCGGCGCCGG)2
Descriptor: (11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+), 5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3', BARIUM ION
Authors:Hall, J.P, Cardin, C.J.
Deposit date:2012-03-20
Release date:2013-03-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:The effects of disubstitution on the binding of ruthenium complexes to DNA
Thesis, University of Reading, 2014
1L4J
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BU of 1l4j by Molmil
Holliday Junction TCGGTACCGA with Na and Ca Binding Sites.
Descriptor: 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3', CALCIUM ION, SODIUM ION
Authors:Thorpe, J.H, Gale, B.C, Teixeira, S.C.M, Cardin, C.J.
Deposit date:2002-03-05
Release date:2003-03-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Conformational and Hydration Effects of Site-selective Sodium, Calcium and Strontium Ion Binding to the DNA Holliday Junction Structure d(TCGGTACCGA)4
J.Mol.Biol., 327, 2003
1M69
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BU of 1m69 by Molmil
Atomic Resolution Structure of 5Br-9amino-DACA with d[CGTACG]2
Descriptor: 5'-D(*CP*GP*TP*AP*CP*G)-3', 5-BROMO-N[2-(DIMETHYLAMINO)ETHYL]-9-AMINOACRIDINE-4-CARBOXAMIDE, SPERMINE
Authors:Teixeira, S.C.M, Thorpe, J.H, Todd, A.K, Cardin, C.J.
Deposit date:2002-07-15
Release date:2003-08-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Heavy Going: the Atomic Resolution Structure of a Topoisomerase II Poison Intercalating into DNA in Multiple Orientations Also Reveals a Multiple Adenine-Thymine Hydrogen Bonding Pattern
To be Published
1MF5
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BU of 1mf5 by Molmil
GCATGCT Quadruplex
Descriptor: 5'-D(*GP*CP*AP*TP*GP*CP*T)-3', COBALT HEXAMMINE(III)
Authors:Thorpe, J.H, Teixeira, S.C.M, Gale, B.C, Cardin, C.J.
Deposit date:2002-08-09
Release date:2003-02-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure of the complementary quadruplex formed by d(GCATGCT) at atomic resolution
Nucleic Acids Res., 31, 2003
1M6G
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BU of 1m6g by Molmil
Structural Characterisation of the Holliday Junction TCGGTACCGA
Descriptor: 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3', STRONTIUM ION
Authors:Thorpe, J.H, Gale, B.C, Teixeira, S.C.M, Cardin, C.J.
Deposit date:2002-07-16
Release date:2003-05-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.652 Å)
Cite:Conformational and hydration effects of site-selective sodium, calcium and strontium ion binding to the DNA Holliday junction structure d(TCGGTACCGA)(4)
J.Mol.Biol., 327, 2003
1JUC
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BU of 1juc by Molmil
Crystal Structure Analysis of a Holliday Junction Formed by CCGGTACCGG
Descriptor: 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'
Authors:Thorpe, J.H, Teixeira, S.C.M, Gale, B.C, Cardin, C.J.
Deposit date:2001-08-24
Release date:2002-02-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural characterization of a new crystal form of the four-way Holliday junction formed by the DNA sequence d(CCGGTACCGG)2: sequence versus lattice?
Acta Crystallogr.,Sect.D, 58, 2002

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PDB entries from 2024-09-11

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