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PDB: 2172 results

8G6S
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BU of 8g6s by Molmil
H2AK119ub-modified nucleosome ubiquitin position 2
Descriptor: 601 DNA (145-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Hicks, C.W, Wolberger, C.
Deposit date:2023-02-15
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Ubiquitinated H2B as gatekeeper of the nucleosome acidic patch
To Be Published
2C9N
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BU of 2c9n by Molmil
Structure of the Epstein-Barr virus ZEBRA protein at approximately 3. 5 Angstrom resolution
Descriptor: 5'-D(*CP*AP*CP*TP*GP*AP*CP*TP*CP*AP *T)-3', 5'-D(*CP*AP*TP*GP*AP*GP*TP*CP*AP*GP *T)-3', BZLF1 TRANS-ACTIVATOR PROTEIN
Authors:Petosa, C, Morand, P, Baudin, F, Moulin, M, Artero, J.B, Muller, C.W.
Deposit date:2005-12-13
Release date:2006-02-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural Basis of Lytic Cycle Activation by the Epstein-Barr Virus Zebra Protein
Mol.Cell, 21, 2006
2C93
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thrombin inhibitors
Descriptor: DIMETHYL SULFOXIDE, HIRUDIN VARIANT-2, N-[(2R,3S)-3-AMINO-2-HYDROXY-4-PHENYLBUTYL]-4-METHOXY-2,3,6-TRIMETHYLBENZENESULFONAMIDE, ...
Authors:Howard, N, Abell, C, Blakemore, W, Carr, R, Chessari, G, Congreve, M, Howard, S, Jhoti, H, Murray, C.W, Seavers, L.C.A, van Montfort, R.L.M.
Deposit date:2005-12-09
Release date:2006-07-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Application of Fragment Screening and Fragment Linking to the Discovery of Novel Thrombin Inhibitors
J.Med.Chem., 49, 2006
2C8Z
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BU of 2c8z by Molmil
thrombin inhibitors
Descriptor: 1-(3-CHLOROPHENYL)METHANAMINE, DIMETHYL SULFOXIDE, HIRUDIN VARIANT-2, ...
Authors:Howard, N, Abell, C, Blakemore, W, Carr, R, Chessari, G, Congreve, M, Howard, S, Jhoti, H, Murray, C.W, Seavers, L.C.A, van Montfort, R.L.M.
Deposit date:2005-12-08
Release date:2006-07-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Application of Fragment Screening and Fragment Linking to the Discovery of Novel Thrombin Inhibitors
J.Med.Chem., 49, 2006
8G6H
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H2BK120ub+H3K79me2-modified nucleosome ubiquitin position 6
Descriptor: 601 DNA (185-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Hicks, C.W, Wolberger, C.
Deposit date:2023-02-15
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Ubiquitinated H2B as gatekeeper of the nucleosome acidic patch
To Be Published
2C8Y
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BU of 2c8y by Molmil
thrombin inhibitors
Descriptor: DIMETHYL SULFOXIDE, HIRUDIN VARIANT-2, N-[(2R,3S)-3-AMINO-2-HYDROXY-4-PHENYLBUTYL]NAPHTHALENE-2-SULFONAMIDE, ...
Authors:Howard, N, Abell, C, Blakemore, W, Carr, R, Chessari, G, Congreve, M, Howard, S, Jhoti, H, Murray, C.W, Seavers, L.C.A, van Montfort, R.L.M.
Deposit date:2005-12-08
Release date:2006-07-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Application of Fragment Screening and Fragment Linking to the Discovery of Novel Thrombin Inhibitors
J.Med.Chem., 49, 2006
2C90
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BU of 2c90 by Molmil
thrombin inhibitors
Descriptor: 1-(4-CHLOROPHENYL)-1H-TETRAZOLE, DIMETHYL SULFOXIDE, HIRUDIN VARIANT-2, ...
Authors:Howard, N, Abell, C, Blakemore, W, Carr, R, Chessari, G, Congreve, M, Howard, S, Jhoti, H, Murray, C.W, Seavers, L.C.A, van Montfort, R.L.M.
Deposit date:2005-12-08
Release date:2006-07-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Application of Fragment Screening and Fragment Linking to the Discovery of Novel Thrombin Inhibitors
J.Med.Chem., 49, 2006
2BYK
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BU of 2byk by Molmil
Histone fold heterodimer of the Chromatin Accessibility Complex
Descriptor: CHRAC-14, CHRAC-16, SULFATE ION
Authors:Fernandez-Tornero, C, Hartlepp, K.F, Grune, T, Eberharter, A, Becker, P.B, Muller, C.W.
Deposit date:2005-08-03
Release date:2005-11-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Histone Fold Subunits of Drosophila Chrac Facilitate Nucleosome Sliding Through Dynamic DNA Interactions.
Mol.Cell.Biol., 25, 2005
2C9L
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BU of 2c9l by Molmil
Structure of the Epstein-Barr virus ZEBRA protein
Descriptor: 5'-D(*AP*AP*GP*CP*AP*CP*TP*GP*AP*CP *TP*CP*AP*TP*GP*AP*AP*GP*T)-3', 5'-D(*AP*CP*TP*TP*CP*AP*CP*TP*GP*AP *GP*TP*CP*AP*GP*TP*GP*CP*T)-3', BZLF1 TRANS-ACTIVATOR PROTEIN
Authors:Petosa, C, Morand, P, Baudin, F, Moulin, M, Artero, J.B, Muller, C.W.
Deposit date:2005-12-13
Release date:2006-02-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Basis of Lytic Cycle Activation by the Epstein-Barr Virus Zebra Protein
Mol.Cell, 21, 2006
2C8W
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BU of 2c8w by Molmil
thrombin inhibitors
Descriptor: (2S,3R)-N-[5-CHLORO-2-(2,3-DIHYDRO-1H-TETRAZOL-1-YL)BENZYL]-3-HYDROXY-4-{[(4-METHOXYPHENYL)SULFONYL]AMINO}-1-PHENYLBUTA N-2-AMINIUM, HIRUDIN VARIANT-2, SODIUM ION, ...
Authors:Howard, N, Abell, C, Blakemore, W, Carr, R, Chessari, G, Congreve, M, Howard, S, Jhoti, H, Murray, C.W, Seavers, L.C.A, van Montfort, R.L.M.
Deposit date:2005-12-08
Release date:2006-07-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Application of Fragment Screening and Fragment Linking to the Discovery of Novel Thrombin Inhibitors
J.Med.Chem., 49, 2006
3QCS
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BU of 3qcs by Molmil
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 6-[2-Amino-6-(4-morpholinyl)-4-pyrimidinyl]-1H-indazol-3-amine
Descriptor: 3-phosphoinositide-dependent protein kinase 1, 6-[2-amino-6-(morpholin-4-yl)pyrimidin-4-yl]-2H-indazol-3-amine, GLYCEROL, ...
Authors:Medina, J.R, Becker, C.J, Blackledge, C.W, Duquenne, C, Feng, Y, Grant, S.W, Heerding, D, Li, W.H, Miller, W.H, Romeril, S.P, Scherzer, D, Shu, A, Bobko, M.A, Chadderton, A.R, Dumble, M, Gradiner, C.M, Gilbert, S, Liu, Q, Rabindran, S.K, Sudakin, V, Xiang, H, Brady, P.G, Campobasso, N, Ward, P, Axten, J.M.
Deposit date:2011-01-17
Release date:2011-03-09
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.487 Å)
Cite:Structure-Based Design of Potent and Selective 3-Phosphoinositide-Dependent Kinase-1 (PDK1) Inhibitors.
J.Med.Chem., 54, 2011
8FG4
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BU of 8fg4 by Molmil
HRAS R97L Crystal Form 1
Descriptor: CALCIUM ION, GTPase HRas, MAGNESIUM ION, ...
Authors:Fetics, S, Johnson, C.W, Mattos, C.
Deposit date:2022-12-12
Release date:2023-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Allosteric site variants affect GTP hydrolysis on Ras.
Protein Sci., 32, 2023
2C8X
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BU of 2c8x by Molmil
thrombin inhibitors
Descriptor: DIMETHYL SULFOXIDE, HIRUDIN VARIANT-2, N-{(2R,3S)-3-[(3-CHLOROBENZYL)AMINO]-2-HYDROXY-4-PHENYLBUTYL}-4-METHOXY-2,3,6-TRIMETHYLBENZENESULFONAMIDE, ...
Authors:Howard, N, Abell, C, Blakemore, W, Carr, R, Chessari, G, Congreve, M, Howard, S, Jhoti, H, Murray, C.W, Seavers, L.C.A, van Montfort, R.L.M.
Deposit date:2005-12-08
Release date:2006-07-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Application of Fragment Screening and Fragment Linking to the Discovery of Novel Thrombin Inhibitors
J.Med.Chem., 49, 2006
8HGJ
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BU of 8hgj by Molmil
Toxascaris leonina galectin (Tl-gal) and Human T-cell immunoglobulin mucin-3 (Tim3) complex
Descriptor: Galectin, Hepatitis A virus cellular receptor 2
Authors:Han, C.W, Jang, S.B.
Deposit date:2022-11-14
Release date:2023-11-22
Method:ELECTRON MICROSCOPY (4.82 Å)
Cite:Toxascaris leonina galectin (Tl-gal) and Human T-cell immunoglobulin mucin-3 (Tim3) complex
To Be Published
8FUK
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BU of 8fuk by Molmil
V. cholerae TniQ-Cascade complex with Type III-B crRNA
Descriptor: CRISPR-associated protein Cas8, Cas6, Cas7, ...
Authors:Chou, C.W, Finkelstein, I.J, Hu, K.
Deposit date:2023-01-17
Release date:2024-01-24
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:V. cholerae TniQ-Cascade complex with Type III-B crRNA
To be Published
8I9J
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BU of 8i9j by Molmil
The PKR and E3L complex
Descriptor: Interferon-induced, double-stranded RNA-activated protein kinase, RNA-binding protein E3
Authors:Han, C.W, Kim, H.J.
Deposit date:2023-02-07
Release date:2023-06-28
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (6.39 Å)
Cite:Structural study of novel vaccinia virus E3L and dsRNA-dependent protein kinase complex.
Biochem.Biophys.Res.Commun., 665, 2023
1ONY
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BU of 1ony by Molmil
Oxalyl-Aryl-Amino Benzoic Acid inhibitors of PTP1B, compound 17
Descriptor: 2-{[2-(2-CARBAMOYL-VINYL)-4-(2-METHANESULFONYLAMINO-2-PENTYLCARBAMOYL-ETHYL)-PHENYL]-OXALYL-AMINO}-BENZOIC ACID, Protein-tyrosine phosphatase, non-receptor type 1
Authors:Liu, G, Szczepankiewicz, B.G, Pei, Z, Janowich, D.A, Xin, Z, Hadjuk, P.J, Abad-Zapatero, C, Liang, H, Hutchins, C.W, Fesik, S.W, Ballaron, S.J, Stashko, M.A, Lubben, T, Mika, A.K, Zinker, B.A, Trevillyan, J.M, Jirousek, M.R.
Deposit date:2003-03-02
Release date:2003-05-20
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Discovery and Structure-Activity Relationship of Oxalylarylaminobenzoic Acids as Inhibitors of Protein Tyrosine Phosphatase 1B
J.Med.Chem., 46, 2003
1ONZ
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BU of 1onz by Molmil
Oxalyl-aryl-Amino Benzoic acid Inhibitors of PTP1B, compound 8b
Descriptor: 2-[(7-HYDROXY-NAPHTHALEN-1-YL)-OXALYL-AMINO]-BENZOIC ACID, Protein-tyrosine phosphatase, non-receptor type 1
Authors:Liu, G, Szczepankiewicz, B.G, Pei, Z, Janowich, D.A, Xin, Z, Hadjuk, P.J, Abad-Zapatero, C, Liang, H, Hutchins, C.W, Fesik, S.W, Ballaron, S.J, Stashko, M.A, Lubben, T, Mika, A.K, Zinker, B.A, Trevillyan, J.M, Jirousek, M.R.
Deposit date:2003-03-02
Release date:2003-05-20
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery and Structure-Activity Relationship of Oxalylarylaminobenzoic Acids as Inhibitors of Protein Tyrosine Phosphatase 1B
J.Med.Chem., 46, 2003
2BAY
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BU of 2bay by Molmil
Crystal structure of the Prp19 U-box dimer
Descriptor: Pre-mRNA splicing factor PRP19
Authors:Vander Kooi, C.W, Ohi, M.D, Rosenberg, J.A, Oldham, M.L, Newcomer, M.E, Gould, K.L, Chazin, W.J.
Deposit date:2005-10-15
Release date:2006-01-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Prp19 U-box Crystal Structure Suggests a Common Dimeric Architecture for a Class of Oligomeric E3 Ubiquitin Ligases.
Biochemistry, 45, 2006
3UPU
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BU of 3upu by Molmil
Crystal structure of the T4 Phage SF1B Helicase Dda
Descriptor: 5'-D(*TP*TP*TP*TP*TP*TP*TP*T)-3', ATP-dependent DNA helicase dda
Authors:He, X, Yun, M.K, Pemble IV, C.W, Kreuzer, K.N, Raney, K.D, White, S.W.
Deposit date:2011-11-18
Release date:2012-06-20
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (3.299 Å)
Cite:The T4 Phage SF1B Helicase Dda Is Structurally Optimized to Perform DNA Strand Separation.
Structure, 20, 2012
3UNO
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BU of 3uno by Molmil
Mycobacterium tuberculosis ferritin homolog, BfrB
Descriptor: Probable bacterioferritin BfrB
Authors:McMath, L.M, Contreras, H, Goulding, C.W, TB Structural Genomics Consortium (TBSGC)
Deposit date:2011-11-16
Release date:2012-11-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Mycobacterium tuberculosis ferritin homolog, BfrB
To be Published
7ZRN
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BU of 7zrn by Molmil
Crystal structure of 10-epi-cubebol synthase from Sorangium cellulosum (ScCubS) in complex with Pyrophosphate
Descriptor: 10-epi-cubebol synthase, ACETATE ION, MAGNESIUM ION, ...
Authors:Levy, C.W.
Deposit date:2022-05-04
Release date:2022-11-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:How a 10- epi-Cubebol Synthase Avoids Premature Reaction Quenching to Form a Tricyclic Product at High Purity.
Acs Catalysis, 12, 2022
8BOU
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BU of 8bou by Molmil
Crystal structure of Blautia producta GH94
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, ...
Authors:Levy, C.W.
Deposit date:2022-11-15
Release date:2023-11-29
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Blautia producta is a competent degrader among human gut Firmicutes for utilizing dietary beta mixed linkage glucan
To Be Published
7A6H
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BU of 7a6h by Molmil
Cryo-EM structure of human apo RNA Polymerase III
Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ...
Authors:Girbig, M, Misiaszek, A.D, Vorlaender, M.K, Mueller, C.W.
Deposit date:2020-08-25
Release date:2021-02-03
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states.
Nat.Struct.Mol.Biol., 28, 2021
7AE1
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BU of 7ae1 by Molmil
Cryo-EM structure of human RNA Polymerase III elongation complex 1
Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ...
Authors:Girbig, M, Misiaszek, A.D, Vorlaender, M.K, Mueller, C.W.
Deposit date:2020-09-17
Release date:2021-02-03
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states.
Nat.Struct.Mol.Biol., 28, 2021

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