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PDB: 2660 results

4EQJ
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Crystal Structure of inactive single chain variant of HIV-1 Protease in Complex with the substrate RT-RH
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, protease, ...
Authors:Schiffer, C.A, Mittal, S.
Deposit date:2012-04-19
Release date:2012-06-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural, kinetic, and thermodynamic studies of specificity designed HIV-1 protease.
Protein Sci., 21, 2012
1NP4
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BU of 1np4 by Molmil
CRYSTAL STRUCTURE OF NITROPHORIN 4 FROM RHODNIUS PROLIXUS
Descriptor: AMMONIA, PROTEIN (NITROPHORIN 4), PROTOPORPHYRIN IX CONTAINING FE
Authors:Andersen, J.F, Weichsel, A, Champagne, D.E, Balfour, C.A, Montfort, W.R.
Deposit date:1998-07-29
Release date:1998-08-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of nitrophorin 4 at 1.5 A resolution: transport of nitric oxide by a lipocalin-based heme protein.
Structure, 6, 1998
2OYE
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BU of 2oye by Molmil
Indomethacin-(R)-alpha-ethyl-ethanolamide bound to Cyclooxygenase-1
Descriptor: 2-[1-(4-CHLOROBENZOYL)-5-METHOXY-2-METHYL-1H-INDOL-3-YL]-N-[(1R)-1-(HYDROXYMETHYL)PROPYL]ACETAMIDE, 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Harman, C.A, Garavito, R.M.
Deposit date:2007-02-21
Release date:2007-07-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural basis of enantioselective inhibition of cyclooxygenase-1 by S-alpha-substituted indomethacin ethanolamides.
J.Biol.Chem., 282, 2007
4LRB
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BU of 4lrb by Molmil
Phosphopentomutase S154G variant soaked with 2,3-dideoxyribose 5-phosphate
Descriptor: 2,3-dideoxy-5-O-phosphono-alpha-D-ribofuranose, ACETATE ION, GLYCEROL, ...
Authors:Birmingham, W.A, Starbird, C.A, Panosian, T.D, Nannemann, D.P, Iverson, T.M, Bachmann, B.O.
Deposit date:2013-07-19
Release date:2013-07-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Bioretrosynthetic construction of a didanosine biosynthetic pathway.
Nat.Chem.Biol., 10, 2014
3U65
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BU of 3u65 by Molmil
The Crystal Structure of Tat-P(T) (Tp0957)
Descriptor: 1,2-ETHANEDIOL, THIOCYANATE ION, Tp33 protein
Authors:Brautigam, C.A, Tomchick, D.R, Deka, R.K, Norgard, M.V.
Deposit date:2011-10-12
Release date:2012-02-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural, Bioinformatic, and In Vivo Analyses of Two Treponema pallidum Lipoproteins Reveal a Unique TRAP Transporter.
J.Mol.Biol., 416, 2012
3NJO
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BU of 3njo by Molmil
X-ray crystal structure of the Pyr1-pyrabactin A complex
Descriptor: 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide, Abscisic acid receptor PYR1, CHLORIDE ION, ...
Authors:Burgie, E.S, Bingman, C.A, Phillips Jr, G.N, Peterson, F.C, Volkman, B.F, Cutler, S.R, Jensen, D.R, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2010-06-17
Release date:2010-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.473 Å)
Cite:Structural basis for selective activation of ABA receptors.
Nat.Struct.Mol.Biol., 17, 2010
4LR8
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BU of 4lr8 by Molmil
Phosphopentomutase S154A variant soaked with ribose 5-phosphate
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5-O-phosphono-alpha-D-ribofuranose, ACETATE ION, ...
Authors:Birmingham, W.A, Starbird, C.A, Panosian, T.D, Nannemann, D.P, Iverson, T.M, Bachmann, B.O.
Deposit date:2013-07-19
Release date:2013-07-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Bioretrosynthetic construction of a didanosine biosynthetic pathway.
Nat.Chem.Biol., 10, 2014
3TOS
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BU of 3tos by Molmil
Crystal Structure of CalS11, Calicheamicin Methyltransferase
Descriptor: 1,2-ETHANEDIOL, CalS11, GLUTAMIC ACID, ...
Authors:Chang, A, Aceti, D.J, Beebe, E.T, Makino, S.-I, Wrobel, R.L, Bingman, C.A, Thorson, J.S, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2011-09-06
Release date:2011-10-05
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure of CalS11, Calicheamicin methyltransferase
To be Published
2GU2
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BU of 2gu2 by Molmil
Crystal Structure of an Aspartoacylase from Rattus norvegicus
Descriptor: Aspa protein, SULFATE ION, ZINC ION
Authors:Bitto, E, Wesenberg, G.E, Phillips Jr, G.N, Bingman, C.A, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2006-04-28
Release date:2006-06-20
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.805 Å)
Cite:Structure of aspartoacylase, the brain enzyme impaired in Canavan disease.
Proc.Natl.Acad.Sci.Usa, 104, 2007
3TVT
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BU of 3tvt by Molmil
Structural basis for Discs Large interaction with Pins
Descriptor: Disks large 1 tumor suppressor protein, Partner of Inscuteable
Authors:Johnston, C.A, Doe, C.Q, Prehoda, K.E.
Deposit date:2011-09-20
Release date:2012-08-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for Discs Large interaction with Pins
To be Published
1NND
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BU of 1nnd by Molmil
Arginine 116 is Essential for Nucleic Acid Recognition by the Fingers Domain of Moloney Murine Leukemia Virus Reverse Transcriptase
Descriptor: Reverse Transcriptase
Authors:Crowther, R.L, Remeta, D.P, Minetti, C.A, Das, D, Montano, S.P, Georgiadis, M.M.
Deposit date:2003-01-13
Release date:2004-01-27
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and energetic characterization of nucleic acid-binding to the fingers domain of Moloney murine leukemia virus reverse transcriptase
Proteins, 57, 2004
4E4D
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BU of 4e4d by Molmil
Crystal structure of mouse RANKL-OPG complex
Descriptor: CHLORIDE ION, Tumor necrosis factor ligand superfamily member 11, soluble form, ...
Authors:Nelson, C.A, Fremont, D.H.
Deposit date:2012-03-12
Release date:2012-10-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:RANKL Employs Distinct Binding Modes to Engage RANK and the Osteoprotegerin Decoy Receptor.
Structure, 20, 2012
4K79
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BU of 4k79 by Molmil
Recognition of the Thomsen-Friedenreich Antigen by a Lamprey Variable Lymphocyte Receptor
Descriptor: Variable lymphocyte receptor, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose
Authors:Luo, M, Velikovsky, C.A, Yang, X.B, Mariuzza, R.A.
Deposit date:2013-04-16
Release date:2013-06-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Recognition of the thomsen-friedenreich pancarcinoma carbohydrate antigen by a lamprey variable lymphocyte receptor.
J.Biol.Chem., 288, 2013
1NR7
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BU of 1nr7 by Molmil
Crystal structure of apo bovine glutamate dehydrogenase
Descriptor: Glutamate dehydrogenase 1
Authors:Banerjee, S, Schmidt, T, Fang, J, Stanley, C.A, Smith, T.J.
Deposit date:2003-01-23
Release date:2003-05-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural studies on ADP activation of mammalian glutamate dehydrogenase and the evolution of regulation
Biochemistry, 42, 2003
3M19
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BU of 3m19 by Molmil
Crystal structure of variable lymphocyte receptor VLRA.R5.1
Descriptor: Variable lymphocyte receptor A diversity region
Authors:Deng, L, Velikovsky, C.A, Mariuzza, R.A.
Deposit date:2010-03-04
Release date:2010-06-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A structural basis for antigen recognition by the T cell-like lymphocytes of sea lamprey.
Proc.Natl.Acad.Sci.USA, 107, 2010
1PK8
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BU of 1pk8 by Molmil
Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
Authors:Brautigam, C.A, Chelliah, Y, Deisenhofer, J.
Deposit date:2003-06-05
Release date:2004-03-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Tetramerization and ATP binding by a protein comprising the A, B, and C domains of rat synapsin I.
J.Biol.Chem., 279, 2004
2JV4
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BU of 2jv4 by Molmil
Structure Characterisation of PINA WW Domain and Comparison with other Group IV WW Domains, PIN1 and ESS1
Descriptor: Peptidyl-prolyl cis/trans isomerase
Authors:Ng, C.A, Kato, Y, Tanokura, M, Brownlee, R.T.C.
Deposit date:2007-09-11
Release date:2007-10-16
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural characterisation of PinA WW domain and a comparison with other Group IV WW domains, Pin1 and Ess1
Biochim.Biophys.Acta, 1784, 2008
4G26
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BU of 4g26 by Molmil
Crystal Structure of proteinaceous RNase P 1 (PRORP1) from A. thaliana with Ca
Descriptor: CALCIUM ION, Pentatricopeptide repeat-containing protein At2g32230, mitochondrial, ...
Authors:Koutmos, M, Howard, M.J, Fierke, C.A.
Deposit date:2012-07-11
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.
Proc.Natl.Acad.Sci.USA, 109, 2012
3TYQ
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BU of 3tyq by Molmil
SAR development and discovery of potent indole-based inhibitors of the hepatitis c virus NS5B polymerase
Descriptor: 5-ethyl-1-(2-fluoro-5-nitrobenzyl)-3-(2-oxo-1,2-dihydropyridin-3-yl)-1H-indole-2-carboxylic acid, PHOSPHATE ION, RNA-directed RNA polymerase
Authors:Lesburg, C.A, Chen, K.X.
Deposit date:2011-09-26
Release date:2012-02-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Novel Class of Highly Potent Irreversible Hepatitis C Virus NS5B Polymerase Inhibitors.
J.Med.Chem., 55, 2012
2OZR
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BU of 2ozr by Molmil
MMP13 Catalytic Domain Complexed with 4-{[1-methyl-2,4-dioxo-6-(3-phenylprop-1-yn-1-yl)-1,4-dihydroquinazolin-3(2H)-yl]methyl}benzoic acid
Descriptor: 4-{[1-METHYL-2,4-DIOXO-6-(3-PHENYLPROP-1-YN-1-YL)-1,4-DIHYDROQUINAZOLIN-3(2H)-YL]METHYL}BENZOIC ACID, ACETOHYDROXAMIC ACID, CALCIUM ION, ...
Authors:Johnson, A.R, Pavlovsky, A.G, Ortwine, D.F, Prior, F, Man, C.-F, Bornemeier, D.A, Banotai, C.A, Mueller, W.T, McConnell, P, Yan, C.H, Baragi, V, Lesch, C, Roark, W.H, Lie, J.J, Fasquelle, V, Wilson, M, Robertson, D, Datta, K, Guzman, R, Han, H.-K, Dyer, R.D.
Deposit date:2007-02-27
Release date:2007-07-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery and characterization of a novel inhibitor of matrix metalloprotease-13 that reduces cartilage damage in vivo without joint fibroplasia side effects.
J.Biol.Chem., 282, 2007
4GIP
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BU of 4gip by Molmil
Structure of the cleavage-activated prefusion form of the parainfluenza virus 5 (PIV5) fusion protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion glycoprotein F1, Fusion glycoprotein F2
Authors:Welch, B.D, Liu, Y, Kors, C.A, Leser, G.P, Jardetzky, T.S, Lamb, R.A.
Deposit date:2012-08-08
Release date:2012-09-19
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the cleavage-activated prefusion form of the parainfluenza virus 5 fusion protein.
Proc.Natl.Acad.Sci.USA, 109, 2012
4HPV
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BU of 4hpv by Molmil
Crystal structure of S-Adenosylmethionine synthetase from Sulfolobus solfataricus
Descriptor: S-adenosylmethionine synthase
Authors:Wang, F, Hurley, K.A, Helmich, K.E, Singh, S, Bingman, C.A, Thorson, J.S, Phillips Jr, G.N, Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2012-10-24
Release date:2012-11-14
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.214 Å)
Cite:Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT from Sulfolobus solfataricus.
Febs J., 281, 2014
4HP9
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BU of 4hp9 by Molmil
Crystal structure of the N-terminal truncated PAS domain from the hERG potassium channel
Descriptor: Potassium voltage-gated channel subfamily H member 2
Authors:Adaixo, R, Morais-Cabral, J.H, Harley, C.A.
Deposit date:2012-10-23
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structural properties of PAS domains from the KCNH potassium channels
Plos One, 8, 2013
3U4O
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BU of 3u4o by Molmil
Novel HCV NS5B polymerase Inhibitors: Discovery of Indole C2 Acyl sulfonamides
Descriptor: 1-[(2-aminopyridin-4-yl)methyl]-5-chloro-3-(2-oxo-1,2-dihydropyridin-3-yl)-1H-indole-2-carboxylic acid, PHOSPHATE ION, RNA-directed RNA polymerase
Authors:Anilkumar, G.N, Selyutin, O, Rosenblum, S.B, Zeng, Q, Jiang, Y, Chan, T.-Y, Pu, H, Wang, L, Bennett, F, Chen, K.X, Lesburg, C.A, Duca, J.S, Gavalas, S, Huang, Y, Pinto, P, Sannigrahi, M, Velazquez, F, Venkataraman, S, Vilbubhan, B, Agrawal, S, Ferrari, E, Jiang, C.-K, Huang, H.-C, Shih, N.-Y, Njoroge, F.G, Kozlowski, J.A.
Deposit date:2011-10-10
Release date:2011-12-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:II. Novel HCV NS5B polymerase inhibitors: Discovery of indole C2 acyl sulfonamides.
Bioorg.Med.Chem.Lett., 22, 2012
4HIE
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BU of 4hie by Molmil
Anti-Streptococcus pneumoniae 23F Fab 023.102
Descriptor: Antibody 023.102, Fab 023.102
Authors:Bryson, S, Risnes, L, Damgupta, S, Thomson, C.A, Schrader, J.W, Pai, E.F.
Deposit date:2012-10-11
Release date:2013-08-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of Preferred Human IgV Genes-Based Protective Antibodies Identify How Conserved Residues Contact Diverse Antigens and Assign Source of Specificity to CDR3 Loop Variation.
J. Immunol., 196, 2016

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