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PDB: 148 results

4QQO
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Crystal structure of C1QL3 mutant D205A
Descriptor: Complement C1q-like protein 3, MAGNESIUM ION
Authors:Ressl, S, Brunger, A.T.
Deposit date:2014-06-27
Release date:2015-04-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.031 Å)
Cite:Structures of C1q-like Proteins Reveal Unique Features among the C1q/TNF Superfamily.
Structure, 23, 2015
4QQL
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BU of 4qql by Molmil
Crystal structure of C1QL3 in P1 space group
Descriptor: Complement C1q-like protein 3, MAGNESIUM ION
Authors:Ressl, S, Brunger, A.T.
Deposit date:2014-06-27
Release date:2015-04-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structures of C1q-like Proteins Reveal Unique Features among the C1q/TNF Superfamily.
Structure, 23, 2015
6MDP
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BU of 6mdp by Molmil
The D1 and D2 domain rings of NSF engaging the SNAP-25 N-terminus within the 20S supercomplex (focused refinement on D1/D2 rings, class 2)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Synaptosomal-associated protein 25, ...
Authors:White, K.I, Zhao, M, Brunger, A.T.
Deposit date:2018-09-04
Release date:2018-09-19
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural principles of SNARE complex recognition by the AAA+ protein NSF.
Elife, 7, 2018
6MDN
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BU of 6mdn by Molmil
The 20S supercomplex engaging the SNAP-25 N-terminus (class 2)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Alpha-soluble NSF attachment protein, ...
Authors:White, K.I, Zhao, M, Brunger, A.T.
Deposit date:2018-09-04
Release date:2018-09-19
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural principles of SNARE complex recognition by the AAA+ protein NSF.
Elife, 7, 2018
6MDM
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BU of 6mdm by Molmil
The 20S supercomplex engaging the SNAP-25 N-terminus (class 1)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Alpha-soluble NSF attachment protein, ...
Authors:White, K.I, Zhao, M, Brunger, A.T.
Deposit date:2018-09-04
Release date:2018-09-19
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural principles of SNARE complex recognition by the AAA+ protein NSF.
Elife, 7, 2018
7TIK
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BU of 7tik by Molmil
Structure of the SARS-CoV-2 Omicron spike post-fusion bundle
Descriptor: Ferritin, Dps family protein and Spike protein S2' chimera, Spike protein S2'
Authors:Yang, K, Brunger, A.T.
Deposit date:2022-01-13
Release date:2022-04-06
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structure-based design of a SARS-CoV-2 Omicron-specific inhibitor.
Proc.Natl.Acad.Sci.USA, 120, 2023
5FOY
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BU of 5foy by Molmil
De novo structure of the binary mosquito larvicide BinAB at pH 7
Descriptor: 41.9 KDA INSECTICIDAL TOXIN, LARVICIDAL TOXIN 51 KDA PROTEIN
Authors:Colletier, J.P, Sawaya, M.R, Gingery, M, Rodriguez, J.A, Cascio, D, Brewster, A.S, Michels-Clark, T, Boutet, S, Williams, G.J, Messerschmidt, M, DePonte, D.P, Sierra, R.G, Laksmono, H, Koglin, J.E, Hunter, M.S, W Park, H, Uervirojnangkoorn, M, Bideshi, D.L, Brunger, A.T, Federici, B.A, Sauter, N.K, Eisenberg, D.S.
Deposit date:2015-11-26
Release date:2016-10-05
Last modified:2019-08-28
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:De Novo Phasing with X-Ray Laser Reveals Mosquito Larvicide Binab Structure.
Nature, 539, 2016
3QBA
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BU of 3qba by Molmil
Reintroducing Electrostatics into Macromolecular Crystallographic Refinement: Z-DNA (X-ray)
Descriptor: Z-DNA
Authors:Fenn, T.D, Schnieders, M.J, Mustyakimov, M, Wu, C, Langan, P, Pande, V.S, Brunger, A.T.
Deposit date:2011-01-12
Release date:2011-03-02
Last modified:2024-02-21
Method:NEUTRON DIFFRACTION (1.53 Å), X-RAY DIFFRACTION
Cite:Reintroducing electrostatics into macromolecular crystallographic refinement: application to neutron crystallography and DNA hydration.
Structure, 19, 2011
1FZK
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BU of 1fzk by Molmil
MHC CLASS I NATURAL MUTANT H-2KBM1 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND SENDAI VIRUS NUCLEOPROTEIN
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rudolph, M.G, Speir, J.A, Brunmark, A, Mattsson, N, Jackson, M.R, Peterson, P.A, Teyton, L, Wilson, I.A.
Deposit date:2000-10-03
Release date:2001-03-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structures of K(bm1) and K(bm8) reveal that subtle changes in the peptide environment impact thermostability and alloreactivity.
Immunity, 14, 2001
1FZO
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BU of 1fzo by Molmil
MHC CLASS I NATURAL MUTANT H-2KBM8 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND SENDAI VIRUS NUCLEOPROTEIN
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rudolph, M.G, Speir, J.A, Brunmark, A, Mattsson, N, Jackson, M.R, Peterson, P.A, Teyton, L, Wilson, I.A.
Deposit date:2000-10-03
Release date:2001-03-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The crystal structures of K(bm1) and K(bm8) reveal that subtle changes in the peptide environment impact thermostability and alloreactivity.
Immunity, 14, 2001
1FZJ
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BU of 1fzj by Molmil
MHC CLASS I NATURAL MUTANT H-2KBM1 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND VESICULAR STOMATITIS VIRUS NUCLEOPROTEIN
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rudolph, M.G, Speir, J.A, Brunmark, A, Mattsson, N, Jackson, M.R, Peterson, P.A, Teyton, L, Wilson, I.A.
Deposit date:2000-10-03
Release date:2001-03-28
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structures of K(bm1) and K(bm8) reveal that subtle changes in the peptide environment impact thermostability and alloreactivity.
Immunity, 14, 2001
6MDO
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BU of 6mdo by Molmil
The D1 and D2 domain rings of NSF engaging the SNAP-25 N-terminus within the 20S supercomplex (focused refinement on D1/D2 rings, class 1)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Synaptosomal-associated protein 25, ...
Authors:White, K.I, Zhao, M, Brunger, A.T.
Deposit date:2018-09-04
Release date:2018-09-19
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural principles of SNARE complex recognition by the AAA+ protein NSF.
Elife, 7, 2018
8FA1
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BU of 8fa1 by Molmil
Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with N969K mutation
Descriptor: Ferritin, Dps family protein and Spike protein S2' chimera, Spike protein S2' HR2
Authors:Yang, K, Brunger, A.T.
Deposit date:2022-11-25
Release date:2023-03-29
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.51 Å)
Cite:Structure-based design of a SARS-CoV-2 Omicron-specific inhibitor.
Proc.Natl.Acad.Sci.USA, 120, 2023
8FA2
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BU of 8fa2 by Molmil
Cryo-EM structure of the SARS-CoV-2 Omicron HR1-42G complex
Descriptor: Scaffolded Spike protein S2' HR1, Spike protein S2' 42G
Authors:Yang, K, Brunger, A.T.
Deposit date:2022-11-25
Release date:2023-03-29
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Structure-based design of a SARS-CoV-2 Omicron-specific inhibitor.
Proc.Natl.Acad.Sci.USA, 120, 2023
5CCG
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BU of 5ccg by Molmil
Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form)
Descriptor: CALCIUM ION, Synaptosomal-associated protein 25, Synaptotagmin-1, ...
Authors:Zhou, Q, Zhao, M, Lyubimov, A.Y, Uervirojnangkoorn, M, Zeldin, O.B, Weis, W.I, Brunger, A.T.
Deposit date:2015-07-02
Release date:2015-08-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Architecture of the synaptotagmin-SNARE machinery for neuronal exocytosis.
Nature, 525, 2015
4QPY
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BU of 4qpy by Molmil
Crystal structure of C1QL2
Descriptor: Complement C1q-like protein 2
Authors:Ressl, S, Brunger, A.T.
Deposit date:2014-06-25
Release date:2015-04-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.384 Å)
Cite:Structures of C1q-like Proteins Reveal Unique Features among the C1q/TNF Superfamily.
Structure, 23, 2015
5E1N
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BU of 5e1n by Molmil
Selenomethionine Ca2+-Calmodulin from Paramecium tetraurelia qFit disorder model
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Calmodulin
Authors:Lin, J, van den Bedem, H, Brunger, A.T, Wilson, M.A.
Deposit date:2015-09-29
Release date:2015-11-25
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution experimental phase information reveals extensive disorder and bound 2-methyl-2,4-pentanediol in Ca(2+)-calmodulin.
Acta Crystallogr D Struct Biol, 72, 2016
5E1K
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BU of 5e1k by Molmil
Selenomethionine Ca2+-Calmodulin from Paramecium tetraurelia SAD data
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Calmodulin
Authors:Lin, J, van den Bedem, H, Brunger, A.T, Wilson, M.A.
Deposit date:2015-09-29
Release date:2015-11-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution experimental phase information reveals extensive disorder and bound 2-methyl-2,4-pentanediol in Ca(2+)-calmodulin.
Acta Crystallogr D Struct Biol, 72, 2016
5E1P
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BU of 5e1p by Molmil
Ca(2+)-Calmodulin from Paramecium tetraurelia qFit disorder model
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Calmodulin
Authors:Lin, J, van den Bedem, H, Brunger, A.T, Wilson, M.A.
Deposit date:2015-09-29
Release date:2015-11-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Atomic resolution experimental phase information reveals extensive disorder and bound 2-methyl-2,4-pentanediol in Ca(2+)-calmodulin.
Acta Crystallogr D Struct Biol, 72, 2016
5CCJ
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BU of 5ccj by Molmil
Crystal structure of the quintuple mutant of the synaptotagmin-1 C2B domain
Descriptor: GLYCEROL, SULFATE ION, Synaptotagmin-1
Authors:Zhou, Q, Zhao, M, Brunger, A.T.
Deposit date:2015-07-02
Release date:2015-08-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Architecture of the synaptotagmin-SNARE machinery for neuronal exocytosis.
Nature, 525, 2015
4QQP
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BU of 4qqp by Molmil
Crystal structure of C1QL3 mutant D207A
Descriptor: CADMIUM ION, Complement C1q-like protein 3
Authors:Ressl, S, Brunger, A.T.
Deposit date:2014-06-27
Release date:2015-04-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.464 Å)
Cite:Structures of C1q-like Proteins Reveal Unique Features among the C1q/TNF Superfamily.
Structure, 23, 2015
4QQ2
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BU of 4qq2 by Molmil
Crystal structure of C1QL1
Descriptor: C1q-related factor, CADMIUM ION
Authors:Ressl, S, Brunger, A.T.
Deposit date:2014-06-26
Release date:2015-04-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Structures of C1q-like Proteins Reveal Unique Features among the C1q/TNF Superfamily.
Structure, 23, 2015
4QQH
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BU of 4qqh by Molmil
Crystal structure of C1QL3 in space group H32
Descriptor: CADMIUM ION, Complement C1q-like protein 3
Authors:Ressl, S, Brunger, A.T.
Deposit date:2014-06-27
Release date:2015-04-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structures of C1q-like Proteins Reveal Unique Features among the C1q/TNF Superfamily.
Structure, 23, 2015
5KJ7
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BU of 5kj7 by Molmil
Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form) - from XFEL diffraction
Descriptor: CALCIUM ION, Synaptosomal-associated protein 25, Synaptotagmin-1, ...
Authors:Lyubimov, A.Y, Uervirojnangkoorn, M, Zhou, Q, Zhao, M, Sauter, N.K, Brewster, A.S, Weis, W.I, Brunger, A.T.
Deposit date:2016-06-17
Release date:2016-10-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex.
Elife, 5, 2016
5KJ8
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BU of 5kj8 by Molmil
Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form) - from synchrotron diffraction
Descriptor: CALCIUM ION, Synaptosomal-associated protein 25, Synaptotagmin-1, ...
Authors:Lyubimov, A.Y, Uervirojnangkoorn, M, Zhou, Q, Zhao, M, Sauter, N.K, Brewster, A.S, Weis, W.I, Brunger, A.T.
Deposit date:2016-06-17
Release date:2016-10-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex.
Elife, 5, 2016

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