6FUC
| Structure of aminoglycoside phosphotransferase APH(3'')-Id from Streptomyces rimosus ATCC10970 | Descriptor: | Aminoglycoside phosphotransferase | Authors: | Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Alekseeva, M.G, Mavletova, D.A, Zakharevich, N.V, Rudakova, N.N, Danilenko, V.N, Popov, V.O. | Deposit date: | 2018-02-26 | Release date: | 2019-03-20 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (1.17 Å) | Cite: | Identification, functional and structural characterization of novel aminoglycoside phosphotransferase APH(3′′)-Id from Streptomyces rimosus subsp. rimosus ATCC 10970. Arch.Biochem.Biophys., 671, 2019
|
|
5E25
| Crystal structure of branched-chain aminotransferase from thermophilic archaea Geoglobus acetivorans complexed with alpha-ketoglutarate | Descriptor: | 2-OXOGLUTARIC ACID, PYRIDOXAL-5'-PHOSPHATE, branched-chain aminotransferase | Authors: | Boyko, K.M, Nikolaeva, A.Y, Stekhanova, T.N, Mardanov, A.V, Rakitin, A.L, Ravin, N.V, Popov, V.O. | Deposit date: | 2015-09-30 | Release date: | 2016-10-05 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Thermostable Branched-Chain Amino Acid Transaminases From the Archaea Geoglobus acetivorans and Archaeoglobus fulgidus : Biochemical and Structural Characterization. Front Bioeng Biotechnol, 7, 2019
|
|
5IJG
| Crystal structure of O-acetylhomoserine sulfhydrolase from Brucella melitensis at 2.0 A resolution | Descriptor: | Cys/Met metabolism pyridoxal-phosphate-dependent enzyme, GLYCEROL, PYRIDOXAL-5'-PHOSPHATE | Authors: | Boyko, K.M, Nikolaeva, A.Y, Koolikova, V.V, Kotlov, M.I, Demidkina, T.V, Popov, V.O. | Deposit date: | 2016-03-02 | Release date: | 2017-04-05 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of O-acetylhomoserine sulfhydrolase from Brucella melitensis at 2.0 A resolution To Be Published
|
|
7B1X
| Crystal structure of cold-active esterase PMGL3 from permafrost metagenomic library | Descriptor: | esterase PMGL3 | Authors: | Boyko, K.M, Nikolaeva, A.Y, Petrovskaya, L.E, Kryukova, M.V, Kryukova, E.A, Korzhenevsky, D.A, Lomakina, G.Y, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O. | Deposit date: | 2020-11-25 | Release date: | 2021-11-03 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural and Biochemical Characterization of a Cold-Active PMGL3 Esterase with Unusual Oligomeric Structure. Biomolecules, 11, 2021
|
|
5L8Z
| Structure of thermostable DNA-binding HU protein from micoplasma Spiroplasma melliferum | Descriptor: | DNA-binding protein, SODIUM ION | Authors: | Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korzhenevskiy, D.A, Kamashev, D.E, Vanyushkina, A.A, Lipkin, A.V, Popov, V.O. | Deposit date: | 2016-06-09 | Release date: | 2016-06-22 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Structural basis of the high thermal stability of the histone-like HU protein from the mollicute Spiroplasma melliferum KC3. Sci Rep, 6, 2016
|
|
5MWC
| Crystal structure of the genetically-encoded green calcium indicator NTnC in its calcium bound state | Descriptor: | CALCIUM ION, genetically-encoded green calcium indicator NTnC | Authors: | Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Rakitina, T.V, Popov, V.O, Subach, O.M, Barykina, N.V, Subach, F.V. | Deposit date: | 2017-01-18 | Release date: | 2018-02-14 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | Enchanced variant of genetically-encoded green calcium indicator NTnC To Be Published
|
|
7OIN
| Crystal structure of LSSmScarlet - a genetically encoded red fluorescent protein with a large Stokes shift | Descriptor: | LSSmScarlet - Genetically Encoded Red Fluorescent Proteins with a Large Stokes Shift, SODIUM ION, SULFATE ION | Authors: | Boyko, K.M, Nikolaeva, A.Y, Dorovatovskii, P.V, Subach, O.M, Vlaskina, A.V, Agapova, Y.K, Ivashkina, O.I, Popov, V.O, Subach, F.V. | Deposit date: | 2021-05-12 | Release date: | 2022-02-16 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | LSSmScarlet, dCyRFP2s, dCyOFP2s and CRISPRed2s, Genetically Encoded Red Fluorescent Proteins with a Large Stokes Shift. Int J Mol Sci, 22, 2021
|
|
7P7X
| Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis (holo form). | Descriptor: | ACETATE ION, Aminotransferase class IV, PHOSPHATE ION, ... | Authors: | Boyko, K.M, Nikolaeva, A.Y, Bakunova, A.K, Rakitina, T.V, Bezsudnova, E.Y, Popov, V.O. | Deposit date: | 2021-07-20 | Release date: | 2021-07-28 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | The Uncommon Active Site of D-Amino Acid Transaminase from Haliscomenobacter hydrossis : Biochemical and Structural Insights into the New Enzyme. Molecules, 26, 2021
|
|
7POK
| Crystal structure of ZAD-domain of Pita protein from D.melanogaster | Descriptor: | LD15650p, ZINC ION | Authors: | Boyko, K.M, Bonchuk, A.N, Nikolaeva, A.Y, Georgiev, P.G, Popov, V.O. | Deposit date: | 2021-09-09 | Release date: | 2021-12-08 | Last modified: | 2022-07-20 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure, 30, 2022
|
|
7PO9
| Crystal structure of ZAD-domain of M1BP protein from D.melanogaster | Descriptor: | LD30467p, ZINC ION | Authors: | Boyko, K.M, Bonchuk, A.N, Nikolaeva, A.Y, Georgiev, P.G, Popov, V.O. | Deposit date: | 2021-09-08 | Release date: | 2021-12-08 | Last modified: | 2022-07-20 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure, 30, 2022
|
|
7POH
| Crystal structure of ZAD-domain of Serendipity-d protein from D.melanogaster | Descriptor: | Serendipity locus protein delta, ZINC ION | Authors: | Boyko, K.M, Kachalova, G.S, Bonchuk, A.N, Nikolaeva, A.Y, Georgiev, P.G, Popov, V.O. | Deposit date: | 2021-09-09 | Release date: | 2021-12-08 | Last modified: | 2022-07-20 | Method: | X-RAY DIFFRACTION (2.85 Å) | Cite: | Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity. Structure, 30, 2022
|
|
8AAB
| S148F mutant of blue-to-red fluorescent timer mRubyFT | Descriptor: | mRubyFT S148F mutant of blue-to-red fluorescent timer | Authors: | Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Dorovatovskii, P.V, Subach, O.M, Popov, V.O, Subach, F.V. | Deposit date: | 2022-06-30 | Release date: | 2022-08-17 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | mRubyFT/S147I, a mutant of blue-to-red fluorescent timer Crystallography Reports, 2022
|
|
8A0H
| Crystal structure of the E25A mutant of the Orange Carotenoid Protein X from Gloeobacter kilaueensis JS1 complexed with echinenone | Descriptor: | OCP N-terminal domain-containing protein, SULFATE ION, beta,beta-caroten-4-one | Authors: | Boyko, K.M, Slonimskiy, Y.B, Zupnik, A.O, Varfolomeeva, L.A, Maksimov, E.G, Sluchanko, N.N. | Deposit date: | 2022-05-27 | Release date: | 2023-02-01 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (1.73 Å) | Cite: | A primordial Orange Carotenoid Protein: Structure, photoswitching activity and evolutionary aspects. Int.J.Biol.Macromol., 222, 2022
|
|
4NPA
| Scrystal structure of protein with unknown function from Vibrio cholerae at P22121 spacegroup | Descriptor: | DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Putative uncharacterized protein, ... | Authors: | Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korgenevsky, D.A, Dorovatovsky, P.V, Lipkin, A.V, Minor, W, Shumilin, I.A, Popov, V.O. | Deposit date: | 2013-11-21 | Release date: | 2013-12-11 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal structure of protein with unknown function from Vibrio cholerae at P22121 spacegroup To be Published
|
|
4NPO
| Crystal structure of protein with unknown function from Deinococcus radiodurans at P61 spacegroup | Descriptor: | ACETATE ION, ACETYL GROUP, GLYCEROL, ... | Authors: | Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korgenevsky, D.A, Shabalin, I.G, Shumilin, I.A, Dorovatovsky, P.V, Lipkin, A.V, Popov, V.O. | Deposit date: | 2013-11-22 | Release date: | 2013-12-11 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.47 Å) | Cite: | Crystal structure of protein with unknown function at P61 spacegroup To be Published
|
|
8AH2
| Crystal structure of human 14-3-3 zeta fused to the NPM1 peptide including phosphoserine-48 | Descriptor: | 14-3-3 protein zeta/delta,Nucleophosmin | Authors: | Boyko, K.M, Kapitonova, A.A, Tugaeva, K.V, Varfolomeeva, L.A, Sluchanko, N.N. | Deposit date: | 2022-07-20 | Release date: | 2022-09-14 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Structural basis for the recognition by 14-3-3 proteins of a conditional binding site within the oligomerization domain of human nucleophosmin. Biochem.Biophys.Res.Commun., 627, 2022
|
|
4NS4
| Crystal structure of cold-active estarase from Psychrobacter cryohalolentis K5T | Descriptor: | Alpha/beta hydrolase fold protein | Authors: | Boyko, K.M, Petrovskaya, L.E, Gorbacheva, M.A, Korgenevsky, D.A, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Lipkin, A.V, Popov, V.O. | Deposit date: | 2013-11-28 | Release date: | 2015-01-07 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Three-dimentional structure of an esterse from Psychrobacter cryohalolentis K5T provides clues to unusual thermostability of a cold-active enzyme To be Published
|
|
8C0N
| Crystal structure of the red form of the mTagFT fluorescent timer | Descriptor: | Blue-to-red TagFT fluorescent timer | Authors: | Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Agapova, Y.K, Subach, O.M, Popov, V.O, Subach, F.V. | Deposit date: | 2022-12-19 | Release date: | 2023-03-08 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Blue-to-Red TagFT, mTagFT, mTsFT, and Green-to-FarRed mNeptusFT2 Proteins, Genetically Encoded True and Tandem Fluorescent Timers. Int J Mol Sci, 24, 2023
|
|
6Q8E
| Crystal structure of branched-chain amino acid aminotransferase from Thermobaculum terrenum in PMP-form | Descriptor: | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Branched-chain-amino-acid aminotransferase, CHLORIDE ION | Authors: | Boyko, K.M, Bezsudnova, E.Y, Nikolaeva, A.Y, Zeifman, Y.S, Rakitina, T.V, Popov, V.O. | Deposit date: | 2018-12-14 | Release date: | 2019-01-02 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum. Biochimie, 158, 2018
|
|
6QIN
| CRYSTAL STRUCTURE OF THE PMGL2 ESTERASE FROM PERMAFROST METAGENOMIC LIBRARY | Descriptor: | CHLORIDE ION, MAGNESIUM ION, PMGL2 | Authors: | Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Kryukova, M.V, Petrovskaya, L.E, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O. | Deposit date: | 2019-01-21 | Release date: | 2019-12-25 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure of PMGL2 esterase from the hormone-sensitive lipase family with GCSAG motif around the catalytic serine. Plos One, 15, 2020
|
|
6QLA
| CRYSTAL STRUCTURE OF THE PMGL2 ESTERASE (point mutant 1) FROM PERMAFROST METAGENOMIC LIBRARY | Descriptor: | 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CHLORIDE ION, MAGNESIUM ION, ... | Authors: | Boyko, K.M, Garsia, D, Nikolaeva, A.Y, Korzhenevskiy, D.A, Kryukova, M.V, Petrovskaya, L.E, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O. | Deposit date: | 2019-01-31 | Release date: | 2019-12-25 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.43 Å) | Cite: | Crystal structure of PMGL2 esterase from the hormone-sensitive lipase family with GCSAG motif around the catalytic serine. Plos One, 15, 2020
|
|
6FP5
| Crystal structure of ZAD-domain of CG2712 protein from D.melanogaster | Descriptor: | CG2712, GLYCEROL, ZINC ION | Authors: | Boyko, K.M, Nikolaeva, A.Y, Bonchuk, A.N, Kachalova, G.S, Georgiev, P.G, Popov, V.O. | Deposit date: | 2018-02-09 | Release date: | 2019-08-21 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural basis of diversity and homodimerization specificity of zinc-finger-associated domains in Drosophila. Nucleic Acids Res., 49, 2021
|
|
8P1H
| Crystal structure of the chimera of human 14-3-3 zeta and phosphorylated cytoplasmic loop fragment of the alpha7 acetylcholine receptor | Descriptor: | 1,2-ETHANEDIOL, AZIDE ION, BENZOIC ACID, ... | Authors: | Boyko, K.M, Kapitonova, A.A, Tugaeva, K.V, Varfolomeeva, L.A, Lyukmanova, E.N, Sluchanko, N.N. | Deposit date: | 2023-05-12 | Release date: | 2023-10-18 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Crystal structure reveals canonical recognition of the phosphorylated cytoplasmic loop of human alpha7 nicotinic acetylcholine receptor by 14-3-3 protein. Biochem.Biophys.Res.Commun., 682, 2023
|
|
8PEI
| Crystal structure of the biphotochromic fluorescent protein SAASoti (C21N/V127T variant) in its green on-state | Descriptor: | C21N/V127T form of the biphotochromic fluorescent protein SAASoti | Authors: | Boyko, K.M, Varfolomeeva, L.A, Matyuta, I.O, Gavshina, A.V, Solovyev, I.D, Popov, V.O, Savitsky, A.P. | Deposit date: | 2023-06-14 | Release date: | 2024-01-17 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Crystal structure of the biphotochromic fluorescent protein C21N/V127T SAASoti in its green on-state To Be Published
|
|
8P6G
| Crystal structure of the improved version of the Genetically Encoded Green Calcium Indicator YTnC2-5 | Descriptor: | DI(HYDROXYETHYL)ETHER, Genetically Encoded Green Calcium Indicator YTnC2-5 based on Troponin C from toadfish | Authors: | Boyko, K.M, Nikolaeva, A.Y, Subach, O.M, Vlaskina, A.V, Agapova, Y.K, Popov, V.O, Subach, F.V. | Deposit date: | 2023-05-26 | Release date: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | YTnC2, an improved genetically encoded green calcium indicator based on toadfish troponin C. Febs Open Bio, 13, 2023
|
|