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PDB: 76 件

2QQR
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BU of 2qqr by Molmil
JMJD2A hybrid tudor domains
分子名称: JmjC domain-containing histone demethylation protein 3A, SULFATE ION
著者Lee, J, Botuyan, M.V, Mer, G.
登録日2007-07-26
公開日2007-12-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Distinct binding modes specify the recognition of methylated histones H3K4 and H4K20 by JMJD2A-tudor.
Nat.Struct.Mol.Biol., 15, 2008
7LYA
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BU of 7lya by Molmil
Cryo-EM structure of the human nucleosome core particle with linked histone proteins H2A and H2B
分子名称: DNA (146-MER), DNA (147-MER), Histone H2A type 1-B/E, ...
著者Hu, Q, Botuyan, M.V, Zhao, D, Cui, D, Mer, E, Mer, G.
登録日2021-03-06
公開日2021-07-28
最終更新日2021-09-01
実験手法ELECTRON MICROSCOPY (2.91 Å)
主引用文献Mechanisms of BRCA1-BARD1 nucleosome recognition and ubiquitylation.
Nature, 596, 2021
7LYC
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BU of 7lyc by Molmil
Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A Lys13 and Lys15 in complex with BARD1 (residues 415-777)
分子名称: BRCA1-associated RING domain protein 1, DNA (146-MER), DNA (147-MER), ...
著者Hu, Q, Botuyan, M.V, Zhao, D, Cui, D, Mer, E, Mer, G.
登録日2021-03-06
公開日2021-06-16
最終更新日2021-09-01
実験手法ELECTRON MICROSCOPY (2.94 Å)
主引用文献Mechanisms of BRCA1-BARD1 nucleosome recognition and ubiquitylation.
Nature, 596, 2021
2LY1
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BU of 2ly1 by Molmil
NMR structure of the second and third lotus domains of tudor domain-containing protein 7 (NMR ensemble overlay for Lotus #2)
分子名称: Tudor domain-containing protein 7
著者Cui, G, Botuyan, M, Mer, G.
登録日2012-09-10
公開日2013-09-11
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR structure of the second and third lotus domains of tudor domain-containing protein 7
To be Published
2LY2
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BU of 2ly2 by Molmil
NMR structure of the second and third lotus domains of tudor domain-containing protein 7 (NMR ensemble overlay for Lotus #3)
分子名称: Tudor domain-containing protein 7
著者Cui, G, Botuyan, M, Mer, G.
登録日2012-09-10
公開日2013-09-11
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR structure of the second and third lotus domains of tudor domain-containing protein 7
To be Published
2MWO
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BU of 2mwo by Molmil
Solution structure of 53BP1 tandem Tudor domains in complex with a p53K370me2 peptide
分子名称: Cellular tumor antigen p53, Tumor suppressor p53-binding protein 1
著者Cui, G, Botuyan, M.V, Mer, G.
登録日2014-11-15
公開日2014-12-10
最終更新日2015-03-18
実験手法SOLUTION NMR
主引用文献Structural Plasticity of Methyllysine Recognition by the Tandem Tudor Domain of 53BP1.
Structure, 23, 2015
2MWP
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BU of 2mwp by Molmil
Solution structure of 53BP1 tandem Tudor domains in complex with a p53K382me2 peptide
分子名称: Cellular tumor antigen p53, Tumor suppressor p53-binding protein 1
著者Cui, G, Botuyan, M.V, Mer, G.
登録日2014-11-15
公開日2014-12-10
最終更新日2015-03-18
実験手法SOLUTION NMR
主引用文献Structural Plasticity of Methyllysine Recognition by the Tandem Tudor Domain of 53BP1.
Structure, 23, 2015
2K2W
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BU of 2k2w by Molmil
Second BRCT domain of NBS1
分子名称: Recombination and DNA repair protein
著者Xu, C, Cui, G, Botuyan, M, Mer, G.
登録日2008-04-14
公開日2008-06-17
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structure of a second BRCT domain identified in the nijmegen breakage syndrome protein Nbs1 and its function in an MDC1-dependent localization of Nbs1 to DNA damage sites.
J.Mol.Biol., 381, 2008
2KRE
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BU of 2kre by Molmil
Solution structure of E4B/UFD2A U-Box domain
分子名称: Ubiquitin conjugation factor E4 B
著者Nomine, Y, Wasielewski, E, Botuyan, M, Mer, G.
登録日2009-12-16
公開日2009-12-29
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Molecular Basis for the Association of Human E4B U Box Ubiquitin Ligase with E2-Conjugating Enzymes UbcH5c and Ubc4.
Structure, 18, 2010
2QQS
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BU of 2qqs by Molmil
JMJD2A tandem tudor domains in complex with a trimethylated histone H4-K20 peptide
分子名称: JmjC domain-containing histone demethylation protein 3A, METHYLATED HISTONE H4 PEPTIDE
著者Lee, J, Botuyan, M.V, Mer, G.
登録日2007-07-26
公開日2007-12-11
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Distinct binding modes specify the recognition of methylated histones H3K4 and H4K20 by JMJD2A-tudor.
Nat.Struct.Mol.Biol., 15, 2008
7KLZ
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BU of 7klz by Molmil
Structure of SPOP MATH domain in complex with a Geminin peptide
分子名称: Geminin peptide, PHOSPHATE ION, Speckle-type POZ protein
著者Cui, G, Botuyan, M.V, Mer, G.
登録日2020-11-01
公開日2021-08-18
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献SPOP mutation induces replication over-firing by impairing Geminin ubiquitination and triggers replication catastrophe upon ATR inhibition.
Nat Commun, 12, 2021
5UMU
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BU of 5umu by Molmil
Crystal structure of the middle double PH domain of human FACT complex subunit SPT16
分子名称: ACETATE ION, FACT complex subunit SPT16, FORMIC ACID
著者Hu, Q, Thompson, J.R, Heroux, A, Su, D, Botuyan, M.V, Mer, G.
登録日2017-01-29
公開日2018-01-31
最終更新日2019-12-04
実験手法X-RAY DIFFRACTION (1.903 Å)
主引用文献Crystal structure of the middle double PH domain of human FACT complex subunit SPT16
To Be Published
5UMR
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BU of 5umr by Molmil
Crystal structure of N-terminal domain of human FACT complex subunit SSRP1
分子名称: FACT complex subunit SSRP1
著者Su, D, Hu, Q, Thompson, J.R, Heroux, A, Botuyan, M.V, Mer, G.
登録日2017-01-29
公開日2018-01-31
最終更新日2019-12-04
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献Crystal structure of N-terminal domain of human FACT complex subunit SSRP1
To Be Published
7LXD
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BU of 7lxd by Molmil
Structure of yeast DNA Polymerase Zeta (apo)
分子名称: DNA polymerase delta small subunit, DNA polymerase delta subunit 3, DNA polymerase zeta catalytic subunit, ...
著者Truong, C.D, Craig, T.A, Cui, G, Botuyan, M.V, Serkasevich, R.A, Chan, K.-Y, Mer, G, Chiu, P.-L, Kumar, R.
登録日2021-03-03
公開日2021-06-30
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.11 Å)
主引用文献Cryo-EM reveals conformational flexibility in apo DNA polymerase zeta.
J.Biol.Chem., 297, 2021
5VEY
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BU of 5vey by Molmil
Solution NMR structure of histone H2A-H2B mono-ubiquitylated at H2A Lys15 in complex with RNF169 (653-708)
分子名称: E3 ubiquitin-protein ligase RNF169, Histone H2B type 1-J,Histone H2A type 1-B/E, Polyubiquitin-B
著者Hu, Q, Botuyan, M.V, Cui, G, Mer, G.
登録日2017-04-06
公開日2017-05-17
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18.
Mol. Cell, 66, 2017
5TBN
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BU of 5tbn by Molmil
Solution NMR structure of PHF20 PHD domain in complex with a histone H3K4me2 peptide
分子名称: Histone H3.1, PHD finger protein 20, ZINC ION
著者Cui, G, Botuyan, M.V, Mer, G.
登録日2016-09-12
公開日2016-10-12
最終更新日2019-12-04
実験手法SOLUTION NMR
主引用文献PHF20 Readers Link Methylation of Histone H3K4 and p53 with H4K16 Acetylation.
Cell Rep, 17, 2016
5UMT
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BU of 5umt by Molmil
Crystal structure of N-terminal domain of human FACT complex subunit SPT16
分子名称: 1,2-ETHANEDIOL, FACT complex subunit SPT16, GLYCEROL
著者Su, D, Hu, Q, Thompson, J.R, Botuyan, M.V, Mer, G.
登録日2017-01-29
公開日2018-01-31
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.092 Å)
主引用文献Crystal structure of N-terminal domain of human FACT complex subunit SPT16
To Be Published
5UMS
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BU of 5ums by Molmil
Crystal structure of middle double PH domain of human FACT complex subunit SSRP1
分子名称: FACT complex subunit SSRP1
著者Su, D, Hu, Q, Thompson, J.R, Botuyan, M.V, Mer, G.
登録日2017-01-29
公開日2018-01-31
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.569 Å)
主引用文献Crystal structure of middle double PH domain of human FACT complex subunit SSRP1
To Be Published
5UMV
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BU of 5umv by Molmil
Crystal structure of the BRCT domain of S. cerevisiae Rev1
分子名称: DNA repair protein REV1
著者Lee, J, Xu, C, Thompson, J.R, Botuyan, M.V, Mer, G.
登録日2017-01-29
公開日2018-01-31
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of the BRCT domain of S. cerevisiae Rev1
To Be Published
5VX7
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BU of 5vx7 by Molmil
Solution NMR structure of the BRCT domain of S. cerevisiae Rev1
分子名称: DNA repair protein REV1
著者Xu, C, Cui, G, Botuyan, M.V, Mer, G.
登録日2017-05-23
公開日2018-01-31
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution NMR structure of the BRCT domain of S. cerevisiae Rev1
To Be Published
5VZM
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BU of 5vzm by Molmil
Solution NMR structure of human Rev1 (932-1039) in complex with ubiquitin
分子名称: DNA repair protein REV1, Ubiquitin
著者Cui, G, Botuyan, M.V, Mer, G.
登録日2017-05-29
公開日2018-05-23
最終更新日2019-12-04
実験手法SOLUTION NMR
主引用文献Structural Basis for the Interaction of Mutasome Assembly Factor REV1 with Ubiquitin.
J. Mol. Biol., 430, 2018
2LH9
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BU of 2lh9 by Molmil
NMR structure of the first lotus domain of tudor domain-containing protein 7
分子名称: Tudor domain-containing protein 7
著者Cui, G, Botuyan, M, Mer, G.
登録日2011-08-06
公開日2012-08-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR structure of Tudor domain-containing protein 7
To be Published
8SMW
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BU of 8smw by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 1)
分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
著者Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
登録日2023-04-26
公開日2024-01-17
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SN7
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BU of 8sn7 by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 5)
分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
著者Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
登録日2023-04-26
公開日2024-01-17
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SMX
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BU of 8smx by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 2)
分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
著者Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
登録日2023-04-26
公開日2024-01-17
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024

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件を2024-07-17に公開中

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