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PDB: 39 results

7B3J
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Dynamic complex between all-D-enantiomeric peptide D3 with wild-type amyloid precursor protein 672-726 fragment (amyloid beta 1-55)
Descriptor: D3 all D-enantimeric peptide, Isoform L-APP677 of Amyloid-beta precursor protein
Authors:Bocharov, E.V, Volynsky, P.E, Okhrimenko, I.S, Urban, A.S.
Deposit date:2020-12-01
Release date:2021-01-13
Last modified:2021-12-08
Method:SOLUTION NMR
Cite:All - d - Enantiomeric Peptide D3 Designed for Alzheimer's Disease Treatment Dynamically Interacts with Membrane-Bound Amyloid-beta Precursors.
J.Med.Chem., 64, 2021
7B3K
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Dynamic complex between all-D-enantiomeric peptide D3 with L723P mutant of amyloid precursor protein (APP) 672-726 fragment (amyloid beta 1-55)
Descriptor: D3 all D-enantimeric peptide, Isoform L-APP677 of Amyloid-beta precursor protein
Authors:Bocharov, E.V, Volynsky, P.E, Okhrimenko, I.S, Urban, A.S.
Deposit date:2020-12-01
Release date:2021-01-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:All - d - Enantiomeric Peptide D3 Designed for Alzheimer's Disease Treatment Dynamically Interacts with Membrane-Bound Amyloid-beta Precursors.
J.Med.Chem., 64, 2021
1RQU
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NMR structure of L7 dimer from E.coli
Descriptor: 50S ribosomal protein L7/L12
Authors:Bocharov, E.V, Sobol, A.G, Pavlov, K.V, Korzhnev, D.M, Jaravine, V.A, Gudkov, A.T, Arseniev, A.S.
Deposit date:2003-12-07
Release date:2004-03-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:From structure and dynamics of protein L7/L12 to molecular switching in ribosome.
J.Biol.Chem., 279, 2004
1RQT
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NMR structure of dimeric N-terminal domain of ribosomal protein L7 from E.coli
Descriptor: 50S ribosomal protein L7/L12
Authors:Bocharov, E.V, Sobol, A.G, Pavlov, K.V, Korzhnev, D.M, Jaravine, V.A, Gudkov, A.T, Arseniev, A.S.
Deposit date:2003-12-07
Release date:2004-03-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:From structure and dynamics of protein L7/L12 to molecular switching in ribosome.
J.Biol.Chem., 279, 2004
1RQV
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Spatial model of L7 dimer from E.coli with one hinge region in helical state
Descriptor: 50S ribosomal protein L7/L12
Authors:Bocharov, E.V, Sobol, A.G, Pavlov, K.V, Korzhnev, D.M, Jaravine, V.A, Gudkov, A.T, Arseniev, A.S.
Deposit date:2003-12-07
Release date:2004-03-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:From structure and dynamics of protein L7/L12 to molecular switching in ribosome
J.Biol.Chem., 279, 2004
1RQS
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NMR structure of C-terminal domain of ribosomal protein L7 from E.coli
Descriptor: 50S ribosomal protein L7/L12
Authors:Bocharov, E.V, Sobol, A.G, Pavlov, K.V, Korzhnev, D.M, Jaravine, V.A, Gudkov, A.T, Arseniev, A.S.
Deposit date:2003-12-07
Release date:2004-03-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:From structure and dynamics of protein L7/L12 to molecular switching in ribosome.
J.Biol.Chem., 279, 2004
2J5D
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NMR structure of BNIP3 transmembrane domain in lipid bicelles
Descriptor: BCL2/ADENOVIRUS E1B 19 KDA PROTEIN-INTERACTING PROTEIN 3
Authors:Bocharov, E.V, Pustovalova, Y.E, Volynsky, P.E, Maslennikov, I.V, Goncharuk, M.V, Ermolyuk, Y.S, Arseniev, A.S.
Deposit date:2006-09-14
Release date:2007-04-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Unique dimeric structure of BNip3 transmembrane domain suggests membrane permeabilization as a cell death trigger.
J. Biol. Chem., 282, 2007
6YTS
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Solution NMR structure of type-I ribosome-inactivating protein trichobakin (TBK)
Descriptor: Trichobakin
Authors:Britikov, V.V, Bocharov, E.V, Britikova, E.V, Le, T.B.T, Phan, C.V, Boyko, K.M, Arseniev, A.S, Usanov, S.A.
Deposit date:2020-04-24
Release date:2020-05-06
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structure and dynamics of type-I ribosome-inactivating protein trichobakin (TBK)
To Be Published
7O9U
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Solution structure of oxidized cytochrome c552 from Thioalkalivibrio paradoxus
Descriptor: Cytochrome c552, HEME C
Authors:Britikov, V.V, Britikova, E.V, Altukhov, D.A, Timofeev, V.I, Dergousova, N.I, Rakitina, T.V, Tikhonova, T.V, Usanov, S.A, Popov, V.O, Bocharov, E.V.
Deposit date:2021-04-17
Release date:2021-05-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Unusual Cytochrome c 552 from Thioalkalivibrio paradoxus : Solution NMR Structure and Interaction with Thiocyanate Dehydrogenase.
Int J Mol Sci, 23, 2022
6Z1Y
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Crystal structure of type-I ribosome-inactivating protein trichobakin (TBK)
Descriptor: SODIUM ION, Trichobakin
Authors:Boyko, K.M, Nikolaeva, A.Y, Britikov, V.V, Bocharov, E.V, Britikova, E.V, Le, T.B.T, Phan, C.V, Popov, V.O, Usanov, S.A.
Deposit date:2020-05-14
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of type-I ribosome-inactivating protein trichobakin (TBK)
To Be Published
5OHD
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Putative inactive (dormant) dimeric state of GHR transmembrane domain
Descriptor: Growth hormone receptor
Authors:Lesovoy, D.M, Bocharov, E.V, Bocharova, O.V, Urban, A.S, Arseniev, A.S.
Deposit date:2017-07-15
Release date:2018-04-11
Last modified:2024-07-03
Method:SOLUTION NMR
Cite:Structural basis of the signal transduction via transmembrane domain of the human growth hormone receptor.
Biochim. Biophys. Acta, 1862, 2018
5OEK
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Putative active dimeric state of GHR transmembrane domain
Descriptor: Growth hormone receptor
Authors:Lesovoy, D.M, Bocharov, E.V, Bocharova, O.V, Urban, A.S, Arseniev, A.S.
Deposit date:2017-07-08
Release date:2018-04-11
Last modified:2024-07-03
Method:SOLUTION NMR
Cite:Structural basis of the signal transduction via transmembrane domain of the human growth hormone receptor.
Biochim. Biophys. Acta, 1862, 2018
1J5J
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Solution structure of HERG-specific scorpion toxin BeKm-1
Descriptor: BeKm-1 toxin
Authors:Korolokova, Y.V, Bocharov, E.V, Angelo, K, Maslennikov, I.V, Grinenko, O.V, Lipkin, A.V, Nosireva, E.D, Pluzhnikov, K.A, Olesen, S.-P, Arseniev, A.S, Grishin, E.V.
Deposit date:2002-04-16
Release date:2002-11-20
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:New binding site on common molecular scaffold provides HERG channel specificity of scorpion toxin BeKm-1.
J.Biol.Chem., 277, 2002
1LGL
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Solution structure of HERG-specific scorpion toxin BeKm-1
Descriptor: BeKm-1 toxin
Authors:Korolokova, Y.V, Bocharov, E.V, Angelo, K, Maslennikov, I.V, Grinenko, O.V, Lipkin, A.V, Nosireva, E.D, Pluzhnikov, K.A, Olesen, S.-P, Arseniev, A.S, Grishin, E.V.
Deposit date:2002-04-16
Release date:2002-11-20
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:New binding site on common molecular scaffold provides HERG channel specificity of scorpion toxin BeKm-1.
J.Biol.Chem., 277, 2002
1FFJ
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NMR STRUCTURE OF CARDIOTOXIN IN DPC-MICELLE
Descriptor: CYTOTOXIN 2
Authors:Dubovskii, P.V, Dementieva, D.V, Bocharov, E.V, Utkin, Y.N, Arseniev, A.S.
Deposit date:2000-07-25
Release date:2001-01-17
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:Membrane binding motif of the P-type cardiotoxin.
J.Mol.Biol., 305, 2001
7PH8
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Structure of Insulin-like growth factor 1 receptor's transmembrane domain
Descriptor: Insulin-like growth factor 1 receptor
Authors:Bershatsky, Y.V, Nadezhdin, K.D, Bocharova, O.V, Bocharov, E.V.
Deposit date:2021-08-16
Release date:2022-08-24
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structure of Insulin-like growth factor 1 receptor's transmembrane domain
To Be Published
7PL4
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Structure of Insulin receptor-related receptor's transmembrane domain
Descriptor: Insulin receptor-related protein beta chain
Authors:Bershatsky, Y.V, Nadezhdin, K.D, Bocharova, O.V, Bocharov, E.V.
Deposit date:2021-08-28
Release date:2022-09-07
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structure of Insulin-like growth factor 1 receptor's transmembrane domain
To Be Published
7PHT
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Structure of Insulin receptor's transmembrane domain
Descriptor: Isoform Long of Insulin receptor
Authors:Bershatsky, Y.V, Nadezhdin, K.D, Bocharova, O.V, Bocharov, E.V.
Deposit date:2021-08-18
Release date:2022-09-07
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structure of Insulin receptor's transmembrane domain
To Be Published
5OGU
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Structure of DNA-binding HU protein from micoplasma Spiroplasma melliferum
Descriptor: DNA-binding protein
Authors:Altukhov, D.A, Talyzina, A.A, Agapova, Y.K, Vlaskina, A.V, Korzhenevskiy, D.A, Bocharov, E.V, Rakitina, T.V, Timofeev, V.I.
Deposit date:2017-07-13
Release date:2017-08-23
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structural plasticity and thermal stability of the histone-like protein from Spiroplasma melliferum are due to phenylalanine insertions into the conservative scaffold.
J.Biomol.Struct.Dyn., 36, 2018
6ZYG
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Emfourin (M4in) from Serratia proteamaculans, M4 family peptidase inhibitor
Descriptor: Protealysin-associated protein
Authors:Bozin, T.N, Chukhontseva, K.N, Konarev, P.V, Bocharov, E.V, Demidyuk, I.V.
Deposit date:2020-07-31
Release date:2021-08-18
Last modified:2024-06-19
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:NMR structure of emfourin, a novel metalloprotease inhibitor
To Be Published
1CCQ
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NMR STRUCTURE WITH TIGHTLY BOUND WATER MOLECULES OF CYTOTOXIN II (CARDIOTOXIN) FROM NAJA NAJA OXIANA IN AQUEOUS SOLUTION (MINOR FORM).
Descriptor: PROTEIN (CYTOTOXIN 2)
Authors:Dementieva, D.V, Bocharov, E.V, Arseniev, A.S.
Deposit date:1999-03-02
Release date:1999-06-29
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Two forms of cytotoxin II (cardiotoxin) from Naja naja oxiana in aqueous solution: spatial structures with tightly bound water molecules.
Eur.J.Biochem., 263, 1999
1CB9
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NMR STRUCTURE WITH TIGHTLY BOUND WATER MOLECULES OF CYTOTOXIN II (CARDIOTOXIN) FROM NAJA NAJA OXIANA IN AQUEOUS SOLUTION (MAJOR FORM).
Descriptor: PROTEIN (CYTOTOXIN 2)
Authors:Dementieva, D.V, Bocharov, E.V, Arseniev, A.S.
Deposit date:1999-03-01
Release date:1999-06-29
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Two forms of cytotoxin II (cardiotoxin) from Naja naja oxiana in aqueous solution: spatial structures with tightly bound water molecules.
Eur.J.Biochem., 263, 1999
2KS1
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Heterodimeric association of Transmembrane domains of ErbB1 and ErbB2 receptors Enabling Kinase Activation
Descriptor: Epidermal growth factor receptor, Receptor tyrosine-protein kinase erbB-2
Authors:Mineev, K.S, Bocharov, E.V, Pustovalova, Y.E, Bocharova, O.V, Chupin, V.V, Arseniev, A.S.
Deposit date:2009-12-24
Release date:2010-06-09
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Spatial Structure of the Transmembrane Domain Heterodimer of ErbB1 and ErbB2 Receptor Tyrosine Kinases
J.Mol.Biol., 2010
2K1L
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NMR structures of dimeric transmembrane domain of the receptor tyrosine kinase EphA1 in lipid bicelles at pH 6.3
Descriptor: Ephrin type-A receptor 1
Authors:Mayzel, M.L, Bocharov, E.V, Arseniev, A.S, Goncharuk, M.V.
Deposit date:2008-03-07
Release date:2008-09-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Spatial Structure and pH-dependent Conformational Diversity of Dimeric Transmembrane Domain of the Receptor Tyrosine Kinase EphA1.
J.Biol.Chem., 283, 2008
2JWA
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ErbB2 transmembrane segment dimer spatial structure
Descriptor: Receptor tyrosine-protein kinase erbB-2
Authors:Mineev, K.S, Bocharov, E.V, Arseniev, A.S.
Deposit date:2007-10-09
Release date:2008-01-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Spatial Structure of the Dimeric Transmembrane Domain of the Growth Factor Receptor ErbB2 Presumably Corresponding to the Receptor Active State
J.Biol.Chem., 283, 2008

 

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