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PDB: 48 件

6V67
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BU of 6v67 by Molmil
Apo Structure of the De Novo PD-1 Binding Miniprotein GR918.2
分子名称: PD-1 Binding Miniprotein GR918.2
著者Bick, M.J, Bryan, C.M, Baker, D, Dimaio, F, Kang, A.
登録日2019-12-04
公開日2020-12-09
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.07 Å)
主引用文献Computational design of a synthetic PD-1 agonist.
Proc.Natl.Acad.Sci.USA, 118, 2021
7JH5
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BU of 7jh5 by Molmil
Co-LOCKR: de novo designed protein switch
分子名称: Co-LOCKR: de novo designed protein switch
著者Bick, M.J, Lajoie, M.J, Boyken, S.E, Sankaran, B, Baker, D.
登録日2020-07-20
公開日2020-09-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.103 Å)
主引用文献Designed protein logic to target cells with precise combinations of surface antigens.
Science, 369, 2020
4OZ6
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BU of 4oz6 by Molmil
Structure of the Branched Intermediate in Protein Splicing
分子名称: ALA-MET-ARG-TYR, MAGNESIUM ION, Mxe gyrA intein
著者Bick, M.J, Liu, Z, Frutos, S, Vila-Perello, M, Debelouchina, G.T, Darst, S.A, Muir, T.W.
登録日2014-02-14
公開日2014-05-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.786 Å)
主引用文献Structure of the branched intermediate in protein splicing.
Proc.Natl.Acad.Sci.USA, 111, 2014
6VEH
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BU of 6veh by Molmil
Computationally designed C3-symmetric homotrimer from HEAT repeat protein
分子名称: HEAT repeat domain-containing protein
著者Bick, M.J, Ueda, G, Baker, D.
登録日2020-01-02
公開日2020-08-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.303 Å)
主引用文献Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens.
Elife, 9, 2020
3D36
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BU of 3d36 by Molmil
How to Switch Off a Histidine Kinase: Crystal Structure of Geobacillus stearothermophilus KinB with the Inhibitor Sda
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Bick, M.J, Lamour, V, Rajashankar, K.R, Gordiyenko, Y, Robinson, C.V, Darst, S.A.
登録日2008-05-09
公開日2009-01-13
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献How to switch off a histidine kinase: crystal structure of Geobacillus stearothermophilus KinB with the inhibitor Sda
J.Mol.Biol., 386, 2009
5TZO
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BU of 5tzo by Molmil
Computationally Designed Fentanyl Binder - Fen49*-Complex
分子名称: CHLORIDE ION, Endo-1,4-beta-xylanase A, N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide, ...
著者Bick, M.J, Greisen, P.J, Morey, K.J, Antunes, M.S, La, D, Sankaran, B, Reymond, L, Johnsson, K, Medford, J.I, Baker, D.
登録日2016-11-22
公開日2017-10-04
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Computational design of environmental sensors for the potent opioid fentanyl.
Elife, 6, 2017
5TVY
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BU of 5tvy by Molmil
Computationally Designed Fentanyl Binder - Fen49
分子名称: 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL, Endo-1,4-beta-xylanase A
著者Bick, M.J, Greisen, P.J, Morey, K.J, Antunes, M.S, La, D, Sankaran, B, Reymond, L, Johnsson, K, Medford, J.I, Baker, D.
登録日2016-11-10
公開日2017-10-04
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Computational design of environmental sensors for the potent opioid fentanyl.
Elife, 6, 2017
5TVV
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BU of 5tvv by Molmil
Computationally Designed Fentanyl Binder - Fen49* Apo
分子名称: Endo-1,4-beta-xylanase A, POTASSIUM ION
著者Bick, M.J, Greisen, P.J, Morey, K.J, Antunes, A.S, La, D, Sankaran, B, Reymond, L, Johnsson, K, Medford, J.I, Baker, D.
登録日2016-11-10
公開日2017-10-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Computational design of environmental sensors for the potent opioid fentanyl.
Elife, 6, 2017
3NIB
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BU of 3nib by Molmil
Teg14 Apo
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL, Teg14
著者Bick, M.J, Banik, J.J, Darst, S.A, Brady, S.F.
登録日2010-06-15
公開日2010-12-08
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The 2.7 A resolution structure of the glycopeptide sulfotransferase Teg14
Acta Crystallogr.,Sect.D, 66, 2010
6W2V
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BU of 6w2v by Molmil
Junction 23, DHR14-DHR18
分子名称: Junction 23 DHR14-DHR18
著者Bick, M.J, Brunette, T.J, Baker, D.
登録日2020-03-08
公開日2020-04-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.399 Å)
主引用文献Modular repeat protein sculpting using rigid helical junctions.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W2W
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BU of 6w2w by Molmil
Junction 24, DHR14-DHR18
分子名称: Junction 24 DHR14-DHR18
著者Bick, M.J, Brunette, T.J, Baker, D.
登録日2020-03-08
公開日2020-04-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Modular repeat protein sculpting using rigid helical junctions.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W2Q
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BU of 6w2q by Molmil
Junction 34, DHR53-DHR4
分子名称: CALCIUM ION, Junction 34
著者Bick, M.J, Brunette, T.J, Baker, D.
登録日2020-03-08
公開日2020-04-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Modular repeat protein sculpting using rigid helical junctions.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W2R
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BU of 6w2r by Molmil
Junction 19, DHR54-DHR79
分子名称: Junction 19 DHR54-DHR79
著者Bick, M.J, Brunette, T.J, Baker, D.
登録日2020-03-08
公開日2020-04-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.344 Å)
主引用文献Modular repeat protein sculpting using rigid helical junctions.
Proc.Natl.Acad.Sci.USA, 117, 2020
3MGB
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BU of 3mgb by Molmil
Teg 12 Ternary Structure Complexed with PAP and the Teicoplanin Aglycone
分子名称: 3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE, ACETATE ION, CHLORIDE ION, ...
著者Bick, M.J, Banik, J.J, Darst, S.A, Brady, S.F.
登録日2010-04-05
公開日2010-06-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Crystal Structures of the Glycopeptide Sulfotransferase Teg12 in a Complex with the Teicoplanin Aglycone.
Biochemistry, 49, 2010
6O35
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BU of 6o35 by Molmil
Crystal structure of a de novo designed octameric helical-bundle protein
分子名称: de novo designed WSHC8
著者Bick, M.J, Xu, C, Sankaran, B, Baker, D.
登録日2019-02-25
公開日2020-03-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Computational design of transmembrane pores.
Nature, 585, 2020
3MGC
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BU of 3mgc by Molmil
Teg12 Apo
分子名称: GLYCEROL, IMIDAZOLE, N-L-ALPHA-ASPARTYL L-PHENYLALANINE 1-METHYL ESTER, ...
著者Bick, M.J, Banik, J.J, Darst, S.A, Brady, S.F.
登録日2010-04-05
公開日2010-06-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Crystal structures of the glycopeptide sulfotransferase Teg12 in a complex with the teicoplanin aglycone.
Biochemistry, 49, 2010
6XT4
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BU of 6xt4 by Molmil
C3_HD-1069 (1BH-69) - fusion protein of helical bundle and repeat protein
分子名称: 1BH_69
著者Bick, M.J, Hsia, Y, Sankaran, B, Baker, D.
登録日2020-07-17
公開日2020-12-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Design of multi-scale protein complexes by hierarchical building block fusion.
Nat Commun, 12, 2021
6W3D
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BU of 6w3d by Molmil
Rd1NTF2_05 with long sheet
分子名称: Rd1NTF2_05
著者Bick, M.J, Basanta, B, Sankaran, B, Baker, D.
登録日2020-03-09
公開日2020-04-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献An enumerative algorithm for de novo design of proteins with diverse pocket structures.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W3G
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BU of 6w3g by Molmil
Rd1NTF2_04 with long sheet
分子名称: Rd1NTF2_04
著者Bick, M.J, Basanta, B, Sankaran, B, Baker, D.
登録日2020-03-09
公開日2020-04-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献An enumerative algorithm for de novo design of proteins with diverse pocket structures.
Proc.Natl.Acad.Sci.USA, 117, 2020
6W3F
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BU of 6w3f by Molmil
Rd1NTF2_05_I64F_A80G_T94P_D101K_L106W
分子名称: Rd1NTF2_05_I64F_A80G_T94P_D101K_L106W
著者Bick, M.J, Basanta, B, Sankaran, B, Baker, D.
登録日2020-03-09
公開日2020-04-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献An enumerative algorithm for de novo design of proteins with diverse pocket structures.
Proc.Natl.Acad.Sci.USA, 117, 2020
3MG9
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BU of 3mg9 by Molmil
Teg 12 Binary Structure Complexed with the Teicoplanin Aglycone
分子名称: FORMIC ACID, GLYCEROL, TEG12, ...
著者Bick, M.J, Banik, J.J, Darst, S.A, Brady, S.F.
登録日2010-04-05
公開日2010-06-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Crystal Structures of the Glycopeptide Sulfotransferase Teg12 in a Complex with the Teicoplanin Aglycone.
Biochemistry, 49, 2010
6DKM
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BU of 6dkm by Molmil
DHD131
分子名称: DHD131_A, DHD131_B
著者Bick, M.J, Chen, Z, Baker, D.
登録日2018-05-29
公開日2018-12-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6WVS
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BU of 6wvs by Molmil
Hyperstable de novo TIM barrel variant DeNovoTIM15
分子名称: DeNovoTIM15 hyperstable de novo TIM barrel
著者Bick, M.J, Haydon, I.C, Caldwell, S.J, Zeymer, C, Huang, P, Fernandez-Velasco, D.A, Baker, D.
登録日2020-05-06
公開日2020-11-25
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.202 Å)
主引用文献Tight and specific lanthanide binding in a de novo TIM barrel with a large internal cavity designed by symmetric domain fusion.
Proc.Natl.Acad.Sci.USA, 117, 2020
6XNS
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BU of 6xns by Molmil
C3_crown-05
分子名称: C3_crown-05
著者Bick, M.J, Hsia, Y, Sankaran, B, Baker, D.
登録日2020-07-04
公開日2020-12-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.19 Å)
主引用文献Design of multi-scale protein complexes by hierarchical building block fusion.
Nat Commun, 12, 2021
6EGC
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BU of 6egc by Molmil
Single-chain version of 2L4HC2_23 (PDB 5J0K)
分子名称: SC_2L4HC2_23
著者Bick, M.J, Chen, Z, DiMaio, F.
登録日2018-08-19
公開日2019-05-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Self-Assembling 2D Arrays with de Novo Protein Building Blocks.
J.Am.Chem.Soc., 141, 2019

 

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