PDB Search results for query - 日本蛋白質結構資料庫

PDB: 110 results

Multi-state design of two-state switchable hinge proteins
Descriptor:	3hb05, PHOSPHATE ION
Authors:	Bera, A.K, Broerman, A, Baker, D.
Deposit date:	2022-12-16
Release date:	2023-08-16
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Design of stimulus-responsive two-state hinge proteins. Science, 381, 2023

8FIT

Multi-state design of two-state switchable hinge proteins
Descriptor:	cs074A
Authors:	Bera, A.K, Praetorius, F, Baker, D.
Deposit date:	2022-12-16
Release date:	2023-08-16
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (2.75 Å)
Cite:	Design of stimulus-responsive two-state hinge proteins. Science, 381, 2023

8FVT

Multi-state design of two-state switchable hinge proteins
Descriptor:	3hb12
Authors:	Bera, A.K, Broerman, A, Baker, D.
Deposit date:	2023-01-19
Release date:	2023-08-16
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (3.07 Å)
Cite:	Design of stimulus-responsive two-state hinge proteins. Science, 381, 2023

8FIQ

Multi-state design of two-state switchable hinge proteins
Descriptor:	cs207AB
Authors:	Bera, A.K, Leung, P.J.Y, Baker, D.
Deposit date:	2022-12-16
Release date:	2023-08-16
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (2.66 Å)
Cite:	Design of stimulus-responsive two-state hinge proteins. Science, 381, 2023

8FIN

Multi-state design of two-state switchable hinge proteins
Descriptor:	cs207A
Authors:	Bera, A.K, Leung, P.J.Y, Baker, D.
Deposit date:	2022-12-16
Release date:	2023-08-16
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Design of stimulus-responsive two-state hinge proteins. Science, 381, 2023

8FJE

The five-repeat design E8
Descriptor:	E8
Authors:	Bera, A.K, An, L, Baker, D.
Deposit date:	2022-12-19
Release date:	2023-09-27
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Hallucination of closed repeat proteins containing central pockets. Nat.Struct.Mol.Biol., 30, 2023

8FJF

The three-repeat design H10
Descriptor:	H10
Authors:	Bera, A.K, An, L, Baker, D.
Deposit date:	2022-12-19
Release date:	2023-09-27
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Hallucination of closed repeat proteins containing central pockets. Nat.Struct.Mol.Biol., 30, 2023

8FJG

The two-repeat design H12
Descriptor:	H12
Authors:	Bera, A.K, An, L, Baker, D.
Deposit date:	2022-12-19
Release date:	2023-09-27
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.13 Å)
Cite:	Hallucination of closed repeat proteins containing central pockets. Nat.Struct.Mol.Biol., 30, 2023

8CUX

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	R3-1 Chain B
Authors:	Bera, A.K, Natterman, U, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUV

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	F4132-1 chain A, F4132-1 chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUU

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	F4132-1-0 chain A, F4132-1-0 chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (2.91 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUT

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1(Imd) Chain A, I432-1(Imd) Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (4 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUS

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1(NaCl) Chain A, I432-1(NaCl) Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.98 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CWZ

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1-X3 Chain A, I432-1-X3 Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-19
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (5.53 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CWS

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	F4132-2 Chain A, F4132-2 Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-19
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (4.4 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUW

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	F4132-1-3 Chain A, F4132-1-3 Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.55 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8G9K

Geometrically programmable nanomaterial construction using regularized protein building blocks
Descriptor:	THR2
Authors:	Bera, A.K, Huddy, T, Baker, D, Kang, A.
Deposit date:	2023-02-21
Release date:	2024-03-13
Last modified:	2024-04-10
Method:	X-RAY DIFFRACTION (2.48 Å)
Cite:	Blueprinting extendable nanomaterials with standardized protein blocks. Nature, 627, 2024

8E1E

Scaffolding protein functional sites using deep learning
Descriptor:	SG122_C3
Authors:	Bera, A.K, Gerben, S, Baker, D.
Deposit date:	2022-08-10
Release date:	2023-08-16
Method:	X-RAY DIFFRACTION (4.27 Å)
Cite:	Design of Diverse Asymmetric Pockets in De Novo Homo-oligomeric Proteins. Biochemistry, 62, 2023

8EK4

De novo designed ice-binding proteins from twist-constrained helices
Descriptor:	Ice-binding protein TIP-99a
Authors:	Bera, A.K, De Haas, R.J.
Deposit date:	2022-09-19
Release date:	2023-07-12
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.35 Å)
Cite:	De novo designed ice-binding proteins from twist-constrained helices. Proc.Natl.Acad.Sci.USA, 120, 2023

8EOV

Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor:	C2HR1_4r, PHOSPHATE ION
Authors:	Bera, A.K, Bethel, N.P.
Deposit date:	2022-10-04
Release date:	2023-08-16
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (1.59 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8EOZ

Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor:	C3HR3_4r
Authors:	Bera, A.K, Bethel, N.P, Kang, A.
Deposit date:	2022-10-04
Release date:	2023-08-16
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8EOX

Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor:	C4HR1_4r
Authors:	Bera, A.K, Bethel, N.P.
Deposit date:	2022-10-04
Release date:	2023-08-16
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.3 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

6WI5

De novo designed protein Foldit4
Descriptor:	De novo designed protein Foldit4
Authors:	Bera, A.K, Koepnick, B, Boykov, A, Baker, D.
Deposit date:	2020-04-08
Release date:	2020-04-22
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.83 Å)
Cite:	De novo design of protein logic gates. Science, 368, 2020

8EJA

Computational design of potent and selective inhibitors of Bak and Bax
Descriptor:	aBAK
Authors:	Bera, A.K, Berger, S.A, Baker, D.
Deposit date:	2022-09-16
Release date:	2024-03-20
Method:	X-RAY DIFFRACTION (2.81 Å)
Cite:	Computational design of potent and selective inhibitors of Bak and Bax To Be Published

8DT0

Scaffolding protein functional sites using deep learning
Descriptor:	Scaffolding protein functional sites
Authors:	Bera, A.K, Watson, J, Baker, D.
Deposit date:	2022-07-24
Release date:	2022-08-10
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.46 Å)
Cite:	Scaffolding protein functional sites using deep learning. Science, 377, 2022

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Total results:	110
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Bera, A.K."