Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 98 件
4H7E
DownloadVisualize
BU of 4h7e by Molmil
Crystal structure of haloalkane dehalogenase LinB V112A mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7F
DownloadVisualize
BU of 4h7f by Molmil
Crystal structure of haloalkane dehalogenase LinB V134I mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H77
DownloadVisualize
BU of 4h77 by Molmil
Crystal structure of haloalkane dehalogenase LinB from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Okai, M, Ohtsuka, J, Imai, F.L, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7J
DownloadVisualize
BU of 4h7j by Molmil
Crystal structure of haloalkane dehalogenase LinB H247A mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7K
DownloadVisualize
BU of 4h7k by Molmil
Crystal structure of haloalkane dehalogenase LinB I253M mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, Haloalkane dehalogenase
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7H
DownloadVisualize
BU of 4h7h by Molmil
Crystal structure of haloalkane dehalogenase LinB T135A mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, Haloalkane dehalogenase
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7D
DownloadVisualize
BU of 4h7d by Molmil
Crystal structure of haloalkane dehalogenase LinB T81A mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7I
DownloadVisualize
BU of 4h7i by Molmil
Crystal structure of haloalkane dehalogenase LinB L138I mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
3ADF
DownloadVisualize
BU of 3adf by Molmil
Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)
分子名称: Monomeric Azami Green
著者Ebisawa, T, Yamamura, A, Kameda, Y, Hayakawa, K, Nagata, K, Tanokura, M.
登録日2010-01-20
公開日2010-05-19
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The structure of mAG, a monomeric mutant of the green fluorescent protein Azami-Green, reveals the structural basis of its stable green emission
Acta Crystallogr.,Sect.F, 66, 2010
3AK4
DownloadVisualize
BU of 3ak4 by Molmil
Crystal structure of NADH-dependent quinuclidinone reductase from agrobacterium tumefaciens
分子名称: NADH-dependent quinuclidinone reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Miyakawa, T, Kataoka, M, Takeshita, D, Nomoto, F, Nagata, K, Shimizu, S, Tanokura, M.
登録日2010-07-07
公開日2011-07-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of NADH-dependent quinuclidinone reductase from Agrobacterium tumefaciens
To be Published
3GQB
DownloadVisualize
BU of 3gqb by Molmil
Crystal Structure of the A3B3 complex from V-ATPase
分子名称: V-type ATP synthase alpha chain, V-type ATP synthase beta chain
著者Meher, M, Akimoto, S, Iwata, M, Nagata, K, Hori, Y, Yoshida, M, Yokoyama, S, Iwata, S, Yokoyama, K.
登録日2009-03-24
公開日2009-11-24
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of A(3)B(3) complex of V-ATPase from Thermus thermophilus.
Embo J., 28, 2009
7VPY
DownloadVisualize
BU of 7vpy by Molmil
Crystal structure of the neutralizing nanobody P86 against SARS-CoV-2
分子名称: 1,2-ETHANEDIOL, Nanobody, SULFATE ION
著者Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A.
登録日2021-10-18
公開日2022-07-20
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron.
Commun Biol, 5, 2022
7VQ0
DownloadVisualize
BU of 7vq0 by Molmil
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A.
登録日2021-10-18
公開日2022-07-20
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.03 Å)
主引用文献A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron.
Commun Biol, 5, 2022
3AEV
DownloadVisualize
BU of 3aev by Molmil
Crystal structure of a/eIF2alpha-aDim2p-rRNA complex from Pyrococcus horikoshii OT3
分子名称: Putative uncharacterized protein PH1566, RNA (5'-R(*GP*GP*AP*UP*CP*AP*CP*CP*UP*CP*C)-3'), Translation initiation factor 2 subunit alpha
著者Tanokura, M, Jia, M.Z, Nagata, K.
登録日2010-02-10
公開日2010-04-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献An archaeal Dim2-like protein, aDim2p, forms a ternary complex with a/eIF2 alpha and the 3' end fragment of 16S rRNA
J.Mol.Biol., 398, 2010
4TMC
DownloadVisualize
BU of 4tmc by Molmil
CRYSTAL STRUCTURE of OLD YELLOW ENZYME from CANDIDA MACEDONIENSIS AKU4588 COMPLEXED with P-HYDROXYBENZALDEHYDE
分子名称: FLAVIN MONONUCLEOTIDE, Old yellow enzyme, P-HYDROXYBENZALDEHYDE
著者Horita, S, Kataoka, M, Kitamura, N, Nakagawa, T, Miyakawa, T, Ohtsuka, J, Nagata, K, Shimizu, S, Tanokura, M.
登録日2014-05-31
公開日2015-02-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献An Engineered Old Yellow Enzyme that Enables Efficient Synthesis of (4R,6R)-Actinol in a One-Pot Reduction System
Chembiochem, 16, 2015
4TMB
DownloadVisualize
BU of 4tmb by Molmil
CRYSTAL STRUCTURE of OLD YELLOW ENZYME from CANDIDA MACEDONIENSIS AKU4588
分子名称: FLAVIN MONONUCLEOTIDE, Old yellow enzyme
著者Horita, S, Kataoka, M, Kitamura, N, Nakagawa, T, Miyakawa, T, Ohtsuka, J, Nagata, K, Shimizu, S, Tanokura, M.
登録日2014-05-31
公開日2015-02-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献An Engineered Old Yellow Enzyme that Enables Efficient Synthesis of (4R,6R)-Actinol in a One-Pot Reduction System
Chembiochem, 16, 2015
8WU8
DownloadVisualize
BU of 8wu8 by Molmil
Crystal structure of the human RAD9-RAD1(F64A/M256A/F266A)-HUS1-RHINO(88-99) complex
分子名称: Cell cycle checkpoint control protein RAD9A, Cell cycle checkpoint protein RAD1, Checkpoint protein HUS1, ...
著者Hara, K, Nagata, K, Iida, N, Hashimoto, H.
登録日2023-10-20
公開日2024-02-14
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Structural basis for intra- and intermolecular interactions on RAD9 subunit of 9-1-1 checkpoint clamp implies functional 9-1-1 regulation by RHINO.
J.Biol.Chem., 300, 2024
3LNQ
DownloadVisualize
BU of 3lnq by Molmil
Structure of Aristaless homeodomain in complex with DNA
分子名称: 5'-D(*CP*CP*CP*TP*AP*AP*TP*TP*AP*AP*AP*CP*CP*C)-3', 5'-D(*GP*GP*GP*TP*TP*TP*AP*AP*TP*TP*AP*GP*GP*G)-3', ACETATE ION, ...
著者Takamura, Y, Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M.
登録日2010-02-02
公開日2010-04-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3APS
DownloadVisualize
BU of 3aps by Molmil
Crystal structure of Trx4 domain of ERdj5
分子名称: DnaJ homolog subfamily C member 10, GLYCEROL, SULFATE ION
著者Inaba, K, Suzuki, M, Nagata, K.
登録日2010-10-20
公開日2011-04-20
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis of an ERAD pathway mediated by the ER-resident protein disulfide reductase ERdj5.
Mol.Cell, 41, 2011
7W3W
DownloadVisualize
BU of 7w3w by Molmil
X-ray structure of apo-VmFbpA, a ferric ion-binding protein from Vibrio metschnikovii
分子名称: Iron-utilization periplasmic protein
著者Lu, P, Sui, M, Zhang, M, Nagata, K.
登録日2021-11-26
公開日2021-12-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.858 Å)
主引用文献Rosmarinic Acid and Sodium Citrate Have a Synergistic Bacteriostatic Effect against Vibrio Species by Inhibiting Iron Uptake.
Int J Mol Sci, 22, 2021
4IJ6
DownloadVisualize
BU of 4ij6 by Molmil
Crystal Structure of a Novel-type Phosphoserine Phosphatase Mutant (H9A) from Hydrogenobacter thermophilus TK-6 in Complex with L-phosphoserine
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, PHOSPHOSERINE, ...
著者Chiba, Y, Horita, S, Ohtsuka, J, Arai, H, Nagata, K, Igarashi, Y, Tanokura, M, Ishii, M.
登録日2012-12-21
公開日2013-03-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis
J.Biol.Chem., 288, 2013
3LQB
DownloadVisualize
BU of 3lqb by Molmil
Crystal structure of the hatching enzyme ZHE1 from the zebrafish Danio rerio
分子名称: 1,2-ETHANEDIOL, LOC792177 protein, SULFATE ION, ...
著者Tanokura, M, Okada, A, Nagata, K, Yasumasu, S, Ohtsuka, J, Iuchi, I.
登録日2010-02-08
公開日2010-09-08
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Crystal structure of zebrafish hatching enzyme 1 from the zebrafish Danio rerio
J.Mol.Biol., 402, 2010
3MGF
DownloadVisualize
BU of 3mgf by Molmil
Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5
分子名称: Fluorescent protein
著者Ebisawa, T, Yamamura, A, Ohtsuka, J, Kameda, Y, Hayakawa, K, Nagata, K, Tanokura, M.
登録日2010-04-06
公開日2011-03-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5
To be Published
5WVU
DownloadVisualize
BU of 5wvu by Molmil
Crystal structure of carboxypeptidase from Thermus thermophilus
分子名称: GLYCEROL, Thermostable carboxypeptidase 1, ZINC ION
著者Okai, M, Nagata, K, Tanokura, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2016-12-29
公開日2017-02-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Insight into the transition between the open and closed conformations of Thermus thermophilus carboxypeptidase.
Biochem. Biophys. Res. Commun., 484, 2017
3WLX
DownloadVisualize
BU of 3wlx by Molmil
Crystal structure of low-specificity L-threonine aldolase from Escherichia coli
分子名称: Low specificity L-threonine aldolase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]
著者Qin, H.-M, Imai, F.L, Miyakawa, T, Kataoka, M, Okai, M, Hou, F, Ohtsuka, J, Nagata, K, Shimizu, S, Tanokura, M.
登録日2013-11-15
公開日2014-12-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Structure analysis of L-threonine aldolase from Escherichia coli unravels the low-specificity and thermostability
To be Published

227111

件を2024-11-06に公開中

PDB statisticsPDBj update infoContact PDBjnumon