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PDB: 175 results

4FBY
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BU of 4fby by Molmil
fs X-ray diffraction of Photosystem II
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Kern, J, Alonso-Mori, R, Hellmich, J, Tran, R, Hattne, J, Laksmono, H, Gloeckner, C, Echols, N, Sierra, R.G, Sellberg, J, Lassalle-Kaiser, B, Gildea, R.J, Glatzel, P, Grosse-Kunstleve, R.W, Latimer, M.J, Mcqueen, T.A, Difiore, D, Fry, A.R, Messerschmidt, M.M, Miahnahri, A, Schafer, D.W, Seibert, M.M, Sokaras, D, Weng, T.-C, Zwart, P.H, White, W.E, Adams, P.D, Bogan, M.J, Boutet, S, Williams, G.J, Messinger, J, Sauter, N.K, Zouni, A, Bergmann, U, Yano, J, Yachandra, V.K.
Deposit date:2012-05-23
Release date:2012-06-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (6.56 Å)
Cite:Room temperature femtosecond X-ray diffraction of photosystem II microcrystals.
Proc.Natl.Acad.Sci.USA, 109, 2012
4OW3
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BU of 4ow3 by Molmil
Thermolysin structure determined by free-electron laser
Descriptor: CALCIUM ION, Thermolysin, ZINC ION
Authors:Hattne, J, Echols, N, Tran, R, Kern, J, Gildea, R.J, Brewster, A.S, Alonso-Mori, R, Glockner, C, Hellmich, J, Laksmono, H, Sierra, R.G, Lassalle-Kaiser, B, Lampe, A, Han, G, Gul, S, DiFiore, D, Milathianaki, D, Fry, A.R, Miahnahri, A, White, W.E, Schafer, D.W, Seibert, M.M, Koglin, J.E, Sokaras, D, Weng, T.-C, Sellberg, J, Latimer, M.J, Glatzel, P, Zwart, P.H, Grosse-Kunstleve, R.W, Bogan, M.J, Messerschmidt, M, Williams, G.J, Boutet, S, Messinger, J, Zouni, A, Yano, J, Bergmann, U, Yachandra, V.K, Adams, P.D, Sauter, N.K.
Deposit date:2014-01-30
Release date:2014-03-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers.
Nat.Methods, 11, 2014
3J40
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BU of 3j40 by Molmil
Validated Near-Atomic Resolution Structure of Bacteriophage Epsilon15 Derived from Cryo-EM and Modeling
Descriptor: gp10, gp7
Authors:Baker, M.L, Hryc, C.F, Zhang, Q, Wu, W, Jakana, J, Haase-Pettingell, C, Afonine, P.V, Adams, P.D, King, J.A, Jiang, W, Chiu, W.
Deposit date:2013-05-30
Release date:2013-07-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling.
Proc.Natl.Acad.Sci.USA, 110, 2013
3J7N
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BU of 3j7n by Molmil
Virus model of brome mosaic virus (second half data set)
Descriptor: Capsid protein
Authors:Wang, Z, Hryc, C, Bammes, B, Afonine, P.V, Jakana, J, Chen, D.H, Liu, X, Baker, M.L, Kao, C, Ludtke, S.J, Schmid, M.F, Adams, P.D, Chiu, W.
Deposit date:2014-07-18
Release date:2014-09-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:An atomic model of brome mosaic virus using direct electron detection and real-space optimization.
Nat Commun, 5, 2014
3J7L
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BU of 3j7l by Molmil
Full virus map of brome mosaic virus
Descriptor: Capsid protein
Authors:Wang, Z, Hryc, C, Bammes, B, Afonine, P.V, Jakana, J, Chen, D.H, Liu, X, Baker, M.L, Kao, C, Ludtke, S.J, Schmid, M.F, Adams, P.D, Chiu, W.
Deposit date:2014-07-18
Release date:2014-09-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:An atomic model of brome mosaic virus using direct electron detection and real-space optimization.
Nat Commun, 5, 2014
3J7M
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BU of 3j7m by Molmil
Virus model of brome mosaic virus (first half data set)
Descriptor: Capsid protein
Authors:Wang, Z, Hryc, C, Bammes, B, Afonine, P.V, Jakana, J, Chen, D.H, Liu, X, Baker, M.L, Kao, C, Ludtke, S.J, Schmid, M.F, Adams, P.D, Chiu, W.
Deposit date:2014-07-18
Release date:2014-09-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:An atomic model of brome mosaic virus using direct electron detection and real-space optimization.
Nat Commun, 5, 2014
3OS9
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BU of 3os9 by Molmil
Estrogen Receptor
Descriptor: 4-[1-allyl-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol, Estrogen receptor
Authors:Bruning, J, Parent, A.A, Gil, G, Zhao, M, Nowak, J, Pace, M.C, Smith, C.L, Afonine, P.V, Adams, P.D, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
3OS8
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BU of 3os8 by Molmil
Estrogen Receptor
Descriptor: 4-[1-benzyl-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol, Estrogen receptor
Authors:Bruning, J, Parent, A.A, Gil, G, Zhao, M, Nowak, J, Pace, M.C, Smith, C.L, Afonine, P.V, Adams, P.D, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (2.031 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
3OSA
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BU of 3osa by Molmil
Estrogen Receptor
Descriptor: 4-[1-(3-methylbut-2-en-1-yl)-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol, Estrogen receptor
Authors:Bruning, J, Parent, A.A, Gil, G, Zhao, M, Nowak, J, Pace, M.C, Smith, C.L, Afonine, P.V, Adams, P.D, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.296 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
3KFB
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BU of 3kfb by Molmil
Crystal structure of a group II chaperonin from Methanococcus maripaludis
Descriptor: Chaperonin, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Pereira, J.H, Ralston, C.Y, Douglas, N, Meyer, D, Knee, K.M, Goulet, D.R, King, J.A, Frydman, J, Adams, P.D.
Deposit date:2009-10-27
Release date:2010-06-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of a group II chaperonin reveal the open and closed states associated with the protein folding cycle.
J.Biol.Chem., 285, 2010
3KFE
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BU of 3kfe by Molmil
Crystal structures of a group II chaperonin from Methanococcus maripaludis
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperonin, MAGNESIUM ION, ...
Authors:Pereira, J.H, Ralston, C.Y, Douglas, N, Meyer, D, Knee, K.M, Goulet, D.R, King, J.A, Frydman, J, Adams, P.D.
Deposit date:2009-10-27
Release date:2010-06-23
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structures of a group II chaperonin reveal the open and closed states associated with the protein folding cycle.
J.Biol.Chem., 285, 2010
3PFX
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BU of 3pfx by Molmil
Crystal structure of Cel7A from Talaromyces emersonii in complex with cellobiose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Cellobiohydrolase 1 catalytic domain, SULFATE ION, ...
Authors:Qin, L, Pereira, J.H, McAndrew, R.P, Simmons, B.A, Sapra, R, Adams, P.D, Sale, K.L.
Deposit date:2010-10-29
Release date:2011-11-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.2616 Å)
Cite:Crystal structure of Cel7A from Talaromyces emersonii in complex with cellobiose
TO BE PUBLISHED
3PFZ
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BU of 3pfz by Molmil
Crystal structure of Cel7A from Talaromyces emersonii in complex with cellotetraose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cellobiohydrolase 1 catalytic domain, SULFATE ION, ...
Authors:Qin, L, Pereira, J.H, McAndrew, R.P, Simmons, B.A, Sapra, R, Adams, P.D, Sale, K.L.
Deposit date:2010-10-29
Release date:2011-11-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.0993 Å)
Cite:Crystal structure of Cel7A from Talaromyces emersonii in complex with cellotetraose
TO BE PUBLISHED
3SDR
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BU of 3sdr by Molmil
Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production
Descriptor: Alpha-bisabolene synthase, CHLORIDE ION, MAGNESIUM ION, ...
Authors:McAndrew, R.P, Peralta-Yahya, P.P, DeGiovanni, A, Pereira, J.H, Hadi, M.Z, Keasling, J.D, Adams, P.D.
Deposit date:2011-06-09
Release date:2011-12-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production.
Structure, 19, 2011
3SDT
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BU of 3sdt by Molmil
Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production
Descriptor: 4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE, Alpha-bisabolene synthase, CHLORIDE ION, ...
Authors:McAndrew, R.P, Peralta-Yahya, P.P, DeGiovanni, A, Pereira, J.H, Hadi, M.Z, Keasling, J.D, Adams, P.D.
Deposit date:2011-06-09
Release date:2011-12-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production.
Structure, 19, 2011
3SDV
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BU of 3sdv by Molmil
Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production
Descriptor: (1-hydroxyethane-1,1-diyl)bis(phosphonic acid), Alpha-bisabolene synthase, CHLORIDE ION, ...
Authors:McAndrew, R.P, Peralta-Yahya, P.P, DeGiovanni, A, Pereira, J.H, Hadi, M.Z, Keasling, J.D, Adams, P.D.
Deposit date:2011-06-09
Release date:2011-12-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production.
Structure, 19, 2011
3SAE
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BU of 3sae by Molmil
Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production
Descriptor: Alpha-bisabolene synthase, CHLORIDE ION, GLYCEROL, ...
Authors:McAndrew, R.P, Peralta-Yahya, P.P, DeGiovanni, A, Pereira, J.H, Hadi, M.Z, Keasling, J.D, Adams, P.D.
Deposit date:2011-06-02
Release date:2011-12-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production.
Structure, 19, 2011
3SDQ
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BU of 3sdq by Molmil
Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production
Descriptor: Alpha-bisabolene synthase, CHLORIDE ION, GLYCEROL
Authors:McAndrew, R.P, Peralta-Yahya, P.P, DeGiovanni, A, Pereira, J.H, Hadi, M.Z, Keasling, J.D, Adams, P.D.
Deposit date:2011-06-09
Release date:2011-12-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production.
Structure, 19, 2011
3SDU
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BU of 3sdu by Molmil
Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production
Descriptor: Alpha-bisabolene synthase, CHLORIDE ION, GERANYL S-THIOLODIPHOSPHATE, ...
Authors:McAndrew, R.P, Peralta-Yahya, P.P, DeGiovanni, A, Pereira, J.H, Hadi, M.Z, Keasling, J.D, Adams, P.D.
Deposit date:2011-06-09
Release date:2011-12-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production.
Structure, 19, 2011
3TX8
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BU of 3tx8 by Molmil
Crystal structure of a succinyl-diaminopimelate desuccinylase (ArgE) from Corynebacterium glutamicum ATCC 13032 at 2.97 A resolution
Descriptor: CHLORIDE ION, PHOSPHATE ION, Succinyl-diaminopimelate desuccinylase
Authors:Joint Center for Structural Genomics (JCSG), Brunger, A.T, Terwilliger, T.C, Read, R.J, Adams, P.D, Levitt, M, Schroder, G.F.
Deposit date:2011-09-22
Release date:2011-10-26
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.972 Å)
Cite:Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum.
Acta Crystallogr.,Sect.D, 68, 2012
3RUW
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BU of 3ruw by Molmil
Crystal structure of Cpn-rls in complex with ADP-AlFx from Methanococcus maripaludis
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Chaperonin, ...
Authors:Pereira, J.H, Ralston, C.Y, Douglas, N.R, Kumar, R, McAndrew, R.P, Knee, K.M, King, J.A, Frydman, J, Adams, P.D.
Deposit date:2011-05-05
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:Mechanism of nucleotide sensing in group II chaperonins.
Embo J., 31, 2012
3RUV
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BU of 3ruv by Molmil
Crystal structure of Cpn-rls in complex with ATP analogue from Methanococcus maripaludis
Descriptor: Chaperonin, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Pereira, J.H, Ralston, C.Y, Douglas, N.R, Kumar, R, McAndrew, R.P, Knee, K.M, King, J.A, Frydman, J, Adams, P.D.
Deposit date:2011-05-05
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.242 Å)
Cite:Mechanism of nucleotide sensing in group II chaperonins.
Embo J., 31, 2012
3RUQ
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BU of 3ruq by Molmil
Crystal structure of Cpn-WT in complex with ADP from Methanococcus maripaludis
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperonin, MAGNESIUM ION
Authors:Pereira, J.H, Ralston, C.Y, Douglas, N.R, Kumar, R, McAndrew, R.P, Knee, K.M, Frydman, J, Adams, P.D.
Deposit date:2011-05-05
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.798 Å)
Cite:Mechanism of nucleotide sensing in group II chaperonins.
Embo J., 31, 2012
3RUS
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BU of 3rus by Molmil
Crystal structure of Cpn-rls in complex with ADP from Methanococcus maripaludis
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperonin, MAGNESIUM ION, ...
Authors:Pereira, J.H, Ralston, C.Y, Douglas, N.R, Kumar, R, McAndrew, R.P, Knee, K.M, King, J.A, Frydman, J, Adams, P.D.
Deposit date:2011-05-05
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.338 Å)
Cite:Mechanism of nucleotide sensing in group II chaperonins.
Embo J., 31, 2012
4NBT
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BU of 4nbt by Molmil
Crystal structure of FabG from Acholeplasma laidlawii
Descriptor: 3-oxoacyl-[acyl-carrier-protein] reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Pereira, J.H, Mcandrew, R.P, Javidpour, P, Beller, H.R, Adams, P.D.
Deposit date:2013-10-23
Release date:2013-12-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Biochemical and Structural Studies of NADH-Dependent FabG Used To Increase the Bacterial Production of Fatty Acids under Anaerobic Conditions.
Appl.Environ.Microbiol., 80, 2014

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數據於2024-07-17公開中

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