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PDB: 304 件

5IMG
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BU of 5img by Molmil
C9A mutant of C69-family cysteine dipeptidase from Lactobacillus farciminis
分子名称: COBALT (II) ION, Dipeptidase, GLYCEROL
著者Kono, R, Watanabe, K.
登録日2016-03-06
公開日2017-03-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.844 Å)
主引用文献A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
5FHI
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BU of 5fhi by Molmil
Crystallographic structure of PsoE without Co
分子名称: GLUTATHIONE, Glutathione S-transferase, putative
著者Hara, K, Hashimoto, H, Yamamoto, T, Tsunematsu, Y, Watanabe, K.
登録日2015-12-22
公開日2016-04-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Oxidative trans to cis Isomerization of Olefins in Polyketide Biosynthesis.
Angew. Chem. Int. Ed. Engl., 55, 2016
5F8B
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BU of 5f8b by Molmil
Crystallographic Structure of PsoE with Co
分子名称: (5~{S},8~{S},9~{R})-2-[(~{E})-hex-1-enyl]-8-methoxy-3-methyl-9-oxidanyl-8-(phenylcarbonyl)-1-oxa-7-azaspiro[4.4]non-2-ene-4,6-dione, COBALT (II) ION, GLUTATHIONE, ...
著者Hara, K, Hashimoto, H, Yamamoto, T, Tsunematsu, Y, Watanabe, K.
登録日2015-12-09
公開日2016-04-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献Oxidative trans to cis Isomerization of Olefins in Polyketide Biosynthesis.
Angew. Chem. Int. Ed. Engl., 55, 2016
5YGX
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BU of 5ygx by Molmil
Structure of BACE1 in complex with N-(3-((4R,5R,6S)-2-amino-6-(1,1-difluoroethyl)-5-fluoro-4-methyl-5,6-dihydro-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-(fluoromethoxy)pyrazine-2-carboxamide
分子名称: Beta-secretase 1, DIMETHYL SULFOXIDE, GLYCEROL, ...
著者Nakahara, K, Fuchino, K, Komano, K, Asada, N, Tadano, G, Hasegawa, T, Yamamoto, T, Sako, Y, Ogawa, M, Unemura, C, Hosono, M, Sakaguchi, G, Ando, S, Ohnishi, S, Kido, Y, Fukushima, T, Dhuyvetter, D, Borghys, H, Gijsen, H, Yamano, Y, Iso, Y, Kusakabe, K.
登録日2017-09-27
公開日2018-08-08
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Discovery of Potent and Centrally Active 6-Substituted 5-Fluoro-1,3-dihydro-oxazine beta-Secretase (BACE1) Inhibitors via Active Conformation Stabilization
J. Med. Chem., 61, 2018
5INX
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BU of 5inx by Molmil
A C69-family cysteine dipeptidase in complex with Met and Ala from Lactobacillus farciminis
分子名称: ALANINE, Dipeptidase, METHIONINE
著者Kono, R, Watanabe, K.
登録日2016-03-08
公開日2017-03-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.681 Å)
主引用文献A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
1ADG
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BU of 1adg by Molmil
CRYSTALLOGRAPHIC STUDIES OF TWO ALCOHOL DEHYDROGENASE-BOUND ANALOGS OF THIAZOLE-4-CARBOXAMIDE ADENINE DINUCLEOTIDE (TAD), THE ACTIVE ANABOLITE OF THE ANTITUMOR AGENT TIAZOFURIN
分子名称: ALCOHOL DEHYDROGENASE, BETA-METHYLENE-SELENAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE, ZINC ION
著者Li, H, Hallows, W.A, Punzi, J.S, Marquez, V.E, Carrell, H.L, Pankiewicz, K.W, Watanabe, K.A, Goldstein, B.M.
登録日1993-10-18
公開日1994-01-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystallographic studies of two alcohol dehydrogenase-bound analogues of thiazole-4-carboxamide adenine dinucleotide (TAD), the active anabolite of the antitumor agent tiazofurin.
Biochemistry, 33, 1994
7D36
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BU of 7d36 by Molmil
Crystal Structure of BACE1 in complex with N-{3-[(3S)-1-amino-5-fluoro-3-methyl-3,4-dihydro-2,6-naphthyridin-3-yl]-4-fluorophenyl}-5-cyano-3-methylpyridine-2-carboxamide
分子名称: Beta-secretase 1, GLYCEROL, IODIDE ION, ...
著者Nakahara, K, Mitsuoka, Y, Kasuya, S, Yamamoto, T, Yamamoto, S, Ito, H, Kido, Y, Kusakabe, K.I.
登録日2020-09-18
公開日2021-07-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Balancing potency and basicity by incorporating fluoropyridine moieties: Discovery of a 1-amino-3,4-dihydro-2,6-naphthyridine BACE1 inhibitor that affords robust and sustained central A beta reduction.
Eur.J.Med.Chem., 216, 2021
6F97
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Crystal structure of the V465T mutant of 5-(Hydroxymethyl)furfural Oxidase (HMFO)
分子名称: 5-(hydroxymethyl)furfural oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者Pickl, M, Swoboda, A, Romero, E, Winkler, C.K, Binda, C, Mattevi, A, Faber, K, Fraaije, M.W.
登録日2017-12-14
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Kinetic Resolution of sec-Thiols by Enantioselective Oxidation with Rationally Engineered 5-(Hydroxymethyl)furfural Oxidase.
Angew. Chem. Int. Ed. Engl., 57, 2018
2XWT
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BU of 2xwt by Molmil
CRYSTAL STRUCTURE OF THE TSH RECEPTOR IN COMPLEX WITH A BLOCKING TYPE TSHR AUTOANTIBODY
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, THYROID BLOCKING HUMAN AUTOANTIBODY K1-70 HEAVY CHAIN, ...
著者Sanders, J, Sanders, P, Young, S, Kabelis, K, Baker, S, Sullivan, A, Evans, M, Clark, J, Wilmot, J, Hu, X, Roberts, E, Powell, M, Nunez Miguel, R, Furmaniak, J, Rees Smith, B.
登録日2010-11-05
公開日2011-03-09
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of the Tsh Receptor (Tshr) Bound to a Blocking-Type Tshr Autoantibody.
J.Mol.Endocrinol., 46, 2011
6LA0
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BU of 6la0 by Molmil
Crystal structure of AoRut
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoside hydrolase family 5
著者Koseki, T, Makabe, K.
登録日2019-11-11
公開日2020-11-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Aspergillus oryzae Rutinosidase: Biochemical and Structural Investigation.
Appl.Environ.Microbiol., 87, 2021
5YY3
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BU of 5yy3 by Molmil
Crystal structure of AsqI
分子名称: Uncharacterized protein AsqI
著者Hara, K, Hashimoto, H, Kishimoto, S, Watanabe, K.
登録日2017-12-07
公開日2018-08-01
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.305 Å)
主引用文献Enzymatic one-step ring contraction for quinolone biosynthesis.
Nat Commun, 9, 2018
4DCQ
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BU of 4dcq by Molmil
Crystal Structure of the Fab Fragment of 3B5H10, an Antibody-Specific for Extended Polyglutamine Repeats (orthorhombic form)
分子名称: 1,2-ETHANEDIOL, 3B5H10 FAB Heavy Chain, 3B5H10 FAB Light Chain
著者Peters-Libeu, C.A, Tran, T, Finkbeiner, S, Weisgraber, K.
登録日2012-01-18
公開日2012-02-22
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Disease-associated polyglutamine stretches in monomeric huntingtin adopt a compact structure.
J.Mol.Biol., 421, 2012
4NEC
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BU of 4nec by Molmil
Conversion of a Disulfide Bond into a Thioacetal Group during Echinomycin Biosynthesis
分子名称: 2-CARBOXYQUINOXALINE, ACETATE ION, Echinomycin, ...
著者Hotta, K, Keegan, R.M, Ranganathan, S, Fang, M, Bibby, J, Winn, M.D, Sato, M, Lian, M, Watanabe, K, Rigden, D.J, Kim, C.-Y.
登録日2013-10-29
公開日2014-01-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Conversion of a disulfide bond into a thioacetal group during echinomycin biosynthesis.
Angew.Chem.Int.Ed.Engl., 53, 2014
2HDN
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BU of 2hdn by Molmil
Trypsin-modified Elongation Factor Tu in complex with tetracycline at 2.8 Angstrom resolution
分子名称: Elongation factor EF-Tu, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Mui, S, Heffron, S.E, Aorora, A, Abel, K, Bergmann, E, Jurnak, F.
登録日2006-06-20
公開日2006-10-31
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Molecular complementarity between tetracycline and the GTPase active site of elongation factor Tu.
Acta Crystallogr.,Sect.D, 62, 2006
5YY2
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BU of 5yy2 by Molmil
Crystal structure of AsqI with Zn
分子名称: Uncharacterized protein AsqI, ZINC ION
著者Hara, K, Hashimoto, H, Kishimoto, S, Watanabe, K.
登録日2017-12-07
公開日2018-08-01
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Enzymatic one-step ring contraction for quinolone biosynthesis.
Nat Commun, 9, 2018
3H94
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BU of 3h94 by Molmil
Crystal structure of the membrane fusion protein CusB from Escherichia coli
分子名称: Cation efflux system protein cusB, SILVER ION
著者Su, C.-C, Yang, F, Long, F, Reyon, D, Routh, M.D, Kuo, D.W, Mokhtari, A.K, Van Ornam, J.D, Rabe, K.L, Hoy, J.A, Lee, Y.J, Rajashankar, K.R, Yu, E.W.
登録日2009-04-30
公開日2009-08-18
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.84 Å)
主引用文献Crystal structure of the membrane fusion protein CusB from Escherichia coli
J.Mol.Biol., 393, 2009
1WLE
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BU of 1wle by Molmil
Crystal Structure of mammalian mitochondrial seryl-tRNA synthetase complexed with seryl-adenylate
分子名称: SERYL ADENYLATE, Seryl-tRNA synthetase
著者Chimnaronk, S, Jeppesen, M.G, Suzuki, T, Nyborg, J, Watanabe, K.
登録日2004-06-25
公開日2005-09-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Dual-mode recognition of noncanonical tRNAs(Ser) by seryl-tRNA synthetase in mammalian mitochondria
Embo J., 24, 2005
6J6C
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BU of 6j6c by Molmil
Borrelia burgdorferi OspA via surface entropy reduction (form3)
分子名称: Outer surface protein A
著者Fujiwara, H, Makabe, K.
登録日2019-01-14
公開日2019-11-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Beta-sheet elasticity of peptide self-assembly mimic, PSAM, with a grafted sequence characterized by comprehensive analyses of isomorphous crystals
J Mol Liq, 290, 2019
6J5N
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BU of 6j5n by Molmil
OspA mutant, PSAM-VLGDV1-form4, grafted short chameleon sequence from alpha-B crystallin
分子名称: Outer surface protein A
著者Fujiwara, H, Makabe, K.
登録日2019-01-11
公開日2019-11-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Beta-sheet elasticity of peptide self-assembly mimic, PSAM, with a grafted sequence characterized by comprehensive analyses of isomorphous crystals
J Mol Liq, 290, 2019
5YD4
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BU of 5yd4 by Molmil
Crystal structure of the scFv antibody 4B08 with epitope peptide (mutation T6A)
分子名称: Epitope peptide (mutation T6A), SULFATE ION, scFv 4B08
著者Caaveiro, J.M.M, Miyanabe, K, Tsumoto, K.
登録日2017-09-11
公開日2018-06-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Intramolecular H-bonds govern the recognition of a flexible peptide by an antibody
J. Biochem., 164, 2018
6J5M
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BU of 6j5m by Molmil
OspA mutant, PSAM-VLGDV1-form3, grafted short chameleon sequence from alpha-B crystallin
分子名称: Outer surface protein A
著者Fujiwara, H, Makabe, K.
登録日2019-01-11
公開日2019-11-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Beta-sheet elasticity of peptide self-assembly mimic, PSAM, with a grafted sequence characterized by comprehensive analyses of isomorphous crystals
J Mol Liq, 290, 2019
6J5Q
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OspA mutant, PSAM-VLGDV1-form7, grafted short chameleon sequence from alpha-B crystallin
分子名称: Outer surface protein A
著者Fujiwara, H, Makabe, K.
登録日2019-01-11
公開日2019-11-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.798 Å)
主引用文献Beta-sheet elasticity of peptide self-assembly mimic, PSAM, with a grafted sequence characterized by comprehensive analyses of isomorphous crystals
J Mol Liq, 290, 2019
6J6E
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BU of 6j6e by Molmil
Borrelia burgdorferi OspA via surface entropy reduction (form5)
分子名称: Outer surface protein A
著者Fujiwara, H, Makabe, K.
登録日2019-01-14
公開日2019-11-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Beta-sheet elasticity of peptide self-assembly mimic, PSAM, with a grafted sequence characterized by comprehensive analyses of isomorphous crystals
J Mol Liq, 290, 2019
6J5O
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BU of 6j5o by Molmil
OspA mutant, PSAM-VLGDV1-form5, grafted short chameleon sequence from alpha-B crystallin
分子名称: Outer surface protein A
著者Fujiwara, H, Makabe, K.
登録日2019-01-11
公開日2019-11-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Beta-sheet elasticity of peptide self-assembly mimic, PSAM, with a grafted sequence characterized by comprehensive analyses of isomorphous crystals
J Mol Liq, 290, 2019
6J6B
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BU of 6j6b by Molmil
Borrelia burgdorferi OspA via surface entropy reduction (form2)
分子名称: Outer surface protein A
著者Fujiwara, H, Makabe, K.
登録日2019-01-14
公開日2019-11-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.901 Å)
主引用文献Beta-sheet elasticity of peptide self-assembly mimic, PSAM, with a grafted sequence characterized by comprehensive analyses of isomorphous crystals
J Mol Liq, 290, 2019

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