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PDB: 304 results

1TAB
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STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN
Descriptor: BOWMAN-BIRK TYPE PROTEINASE INHIBITOR, TRYPSIN
Authors:Tsunogae, Y, Tanaka, I, Yamane, T, Kikkawa, J.-I, Ashida, T, Ishikawa, C, Watanabe, K, Nakamura, S, Takahashi, K.
Deposit date:1990-10-15
Release date:1992-01-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin.
J.Biochem.(Tokyo), 100, 1986
2YHE
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Structure determination of the stereoselective inverting sec- alkylsulfatase Pisa1 from Pseudomonas sp.
Descriptor: SEC-ALKYL SULFATASE, SULFATE ION, ZINC ION
Authors:Kepplinger, B, Faber, K, Macheroux, P, Schober, M, Knaus, T, Wagner, U.G.
Deposit date:2011-04-29
Release date:2012-05-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure and Mechanism of an Inverting Alkylsulfatase from Pseudomonas Sp. Dsm6611 Specific for Secondary Alkylsulfates.
FEBS J., 279, 2012
1Z9H
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Microsomal prostaglandin E synthase type-2
Descriptor: ACETATE ION, CHLORIDE ION, INDOMETHACIN, ...
Authors:Yamada, T, Komoto, J, Watanabe, K, Ohmiya, Y, Takusagawa, F.
Deposit date:2005-04-02
Release date:2005-05-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure and Possible Catalytic Mechanism of Microsomal Prostaglandin E Synthase Type 2 (mPGES-2).
J.Mol.Biol., 348, 2005
2VC6
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Structure of MosA from S. meliloti with pyruvate bound
Descriptor: DIHYDRODIPICOLINATE SYNTHASE
Authors:Phenix, C.P, Nienaber, K.H, Tam, P.H, Delbaere, L.T.J, Palmer, D.R.J.
Deposit date:2007-09-18
Release date:2008-06-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural, functional and calorimetric investigation of MosA, a dihydrodipicolinate synthase from Sinorhizobium meliloti l5-30, does not support involvement in rhizopine biosynthesis.
Chembiochem, 9, 2008
1ADG
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CRYSTALLOGRAPHIC STUDIES OF TWO ALCOHOL DEHYDROGENASE-BOUND ANALOGS OF THIAZOLE-4-CARBOXAMIDE ADENINE DINUCLEOTIDE (TAD), THE ACTIVE ANABOLITE OF THE ANTITUMOR AGENT TIAZOFURIN
Descriptor: ALCOHOL DEHYDROGENASE, BETA-METHYLENE-SELENAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE, ZINC ION
Authors:Li, H, Hallows, W.A, Punzi, J.S, Marquez, V.E, Carrell, H.L, Pankiewicz, K.W, Watanabe, K.A, Goldstein, B.M.
Deposit date:1993-10-18
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystallographic studies of two alcohol dehydrogenase-bound analogues of thiazole-4-carboxamide adenine dinucleotide (TAD), the active anabolite of the antitumor agent tiazofurin.
Biochemistry, 33, 1994
1ADF
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CRYSTALLOGRAPHIC STUDIES OF TWO ALCOHOL DEHYDROGENASE-BOUND ANALOGS OF THIAZOLE-4-CARBOXAMIDE ADENINE DINUCLEOTIDE (TAD), THE ACTIVE ANABOLITE OF THE ANTITUMOR AGENT TIAZOFURIN
Descriptor: ALCOHOL DEHYDROGENASE, BETA-METHYLENE-THIAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE, ZINC ION
Authors:Li, H, Hallows, W.A, Punzi, J.S, Marquez, V.E, Carrell, H.L, Pankiewicz, K.W, Watanabe, K.A, Goldstein, B.M.
Deposit date:1993-10-18
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystallographic studies of two alcohol dehydrogenase-bound analogues of thiazole-4-carboxamide adenine dinucleotide (TAD), the active anabolite of the antitumor agent tiazofurin.
Biochemistry, 33, 1994
1Y9Z
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Crystal Structure of Psychrophilic Subtilisin-like Serine Protease from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11 at 0.14 nm resolution
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, SODIUM ION, ...
Authors:Dong, D, Watanabe, K.
Deposit date:2004-12-16
Release date:2006-03-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structure of Psychrophilic Subtilisin-like Serine Protease from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11 at 0.14 nm resolution
To be Published
1TUW
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BU of 1tuw by Molmil
Structural and Functional Analysis of Tetracenomycin F2 Cyclase from Streptomyces glaucescens: A Type-II Polyketide Cyclase
Descriptor: SULFATE ION, Tetracenomycin polyketide synthesis protein tcmI
Authors:Thompson, T.B, Katayama, K, Watanabe, K, Hutchinson, C.R, Rayment, I.
Deposit date:2004-06-25
Release date:2004-08-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional analysis of tetracenomycin F2 cyclase from Streptomyces glaucescens. A type II polyketide cyclase.
J.Biol.Chem., 279, 2004
1VE8
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X-Ray analyses of oligonucleotides containing 5-formylcytosine, suggesting a structural reason for codon-anticodon recognition of mitochondrial tRNA-Met; Part 1, d(CGCGAATT(f5C)GCG)
Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5FC)P*GP*CP*G)-3', SODIUM ION
Authors:Kimura, K, Ono, A, Watanabe, K, Takenaka, A.
Deposit date:2004-03-29
Release date:2005-06-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:X-Ray analyses of oligonucleotides containing 5-formylcytosine, suggest a structural reason for the codon-anticodon recognition of mitochondrial tRNA-Met
To be Published
1V6C
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Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11
Descriptor: CALCIUM ION, SULFATE ION, alkaline serine protease, ...
Authors:Dong, D, Ihara, T, Motoshima, H, Watanabe, K.
Deposit date:2003-11-28
Release date:2004-12-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11
To be Published
6AIS
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BU of 6ais by Molmil
Loop deletion mutant (deleting two residues)
Descriptor: Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2018-08-24
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
1IXJ
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BU of 1ixj by Molmil
Crystal Structure of d(GCGAAAGCT) Containing Parallel-stranded Duplex with Homo Base Pairs and Anti-Parallel Duplex with Watson-Crick Base pairs
Descriptor: 5'-D(*GP*CP*GP*AP*AP*AP*GP*CP*T)-3', COBALT HEXAMMINE(III), MAGNESIUM ION
Authors:Sunami, T, Kondo, J, Kobuna, T, Hirao, I, Watanabe, K, Miura, K, Takenaka, A.
Deposit date:2002-06-22
Release date:2002-12-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of d(GCGAAAGCT) Containing a Parallel-stranded Duplex with Homo Base Pairs and an Anti-Parallel Duplex with Watson-Crick Base pairs
Nucleic Acids Res., 30, 2002
4AV7
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Structure determination of the double mutant S233Y F250G from the sec- alkyl sulfatase PisA1
Descriptor: SEC-ALKYLSULFATASE, SULFATE ION, ZINC ION
Authors:Knaus, T, Schober, M, Faber, K, Macharaux, P, Wagner, U.
Deposit date:2012-05-24
Release date:2012-12-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure and Mechanism of an Inverting Alkylsulfatase from Pseudomonas Sp. Dsm6611 Specific for Secondary Alkylsulfates.
FEBS J., 279, 2012
1LZG
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BU of 1lzg by Molmil
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEN EGG WHITE LYSOZYME
Authors:Maenaka, K, Matsushima, M, Song, H, Watanabe, K, Kumagai, I.
Deposit date:1995-02-10
Release date:1995-05-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity.
J.Mol.Biol., 247, 1995
1LZE
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BU of 1lze by Molmil
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEN EGG WHITE LYSOZYME
Authors:Maenaka, K, Matsushima, M, Song, H, Watanabe, K, Kumagai, I.
Deposit date:1995-02-10
Release date:1995-05-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity.
J.Mol.Biol., 247, 1995
1LZC
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BU of 1lzc by Molmil
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEN EGG WHITE LYSOZYME
Authors:Maenaka, K, Matsushima, M, Song, H, Watanabe, K, Kumagai, I.
Deposit date:1995-02-10
Release date:1995-05-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity.
J.Mol.Biol., 247, 1995
1LZA
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DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Descriptor: HEN EGG WHITE LYSOZYME
Authors:Maenaka, K, Matsushima, M, Song, H, Watanabe, K, Kumagai, I.
Deposit date:1995-02-10
Release date:1995-05-08
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity.
J.Mol.Biol., 247, 1995
1LZD
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BU of 1lzd by Molmil
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Descriptor: HEN EGG WHITE LYSOZYME
Authors:Maenaka, K, Matsushima, M, Song, H, Watanabe, K, Kumagai, I.
Deposit date:1995-02-10
Release date:1995-05-08
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity.
J.Mol.Biol., 247, 1995
1LZB
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BU of 1lzb by Molmil
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEN EGG WHITE LYSOZYME
Authors:Maenaka, K, Matsushima, M, Song, H, Watanabe, K, Kumagai, I.
Deposit date:1995-02-10
Release date:1995-05-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity.
J.Mol.Biol., 247, 1995
5YGY
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Crystal Structure of BACE1 in complex with (S)-N-(3-(2-amino-6-(fluoromethyl)-4 -methyl-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-cyanopicolinamide
Descriptor: Beta-secretase 1, GLYCEROL, IODIDE ION, ...
Authors:Fuchino, K, Mitsuoka, Y, Masui, M, Kurose, N, Yoshida, S, Komano, K, Yamamoto, T, Ogawa, M, Unemura, C, Hosono, M, Ito, H, Sakaguchi, G, Ando, S, Ohnishi, S, Kido, Y, Fukushima, T, Miyajima, H, Hiroyama, S, Koyabu, K, Dhuyvetter, D, Borghys, H, Gijsen, H, Yamano, Y, Iso, Y, Kusakabe, K.
Deposit date:2017-09-27
Release date:2018-05-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Rational Design of Novel 1,3-Oxazine Based beta-Secretase (BACE1) Inhibitors: Incorporation of a Double Bond To Reduce P-gp Efflux Leading to Robust A beta Reduction in the Brain
J. Med. Chem., 61, 2018
6JSF
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Crystal Structure of BACE1 in complex with N-(3-((4S,5S)-2-amino-4-methyl-5-phenyl-5,6-dihydro-4H-1,3-thiazin-4-yl)-4-fluorophenyl)-5-(fluoromethoxy)pyrazine-2-carboxamide
Descriptor: Beta-secretase 1, DIMETHYL SULFOXIDE, IODIDE ION, ...
Authors:Fujimoto, K, Matsuoka, E, Asada, N, Tadano, G, Yamamoto, T, Nakahara, K, Fuchino, K, Ito, H, Kanegawa, N, Moechars, D, Gijsen, H.J.M, Kusakabe, K.I.
Deposit date:2019-04-08
Release date:2019-08-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Based Design of Selective beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1) Inhibitors: Targeting the Flap to Gain Selectivity over BACE2.
J.Med.Chem., 62, 2019
6JT3
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BU of 6jt3 by Molmil
Crystal Structure of BACE1 in complex with N-{3-[(4R,5R,6R)-2-amino-5-fluoro-4,6-dimethyl-5,6-dihydro-4H-1,3-thiazin-4-yl]-4-fluorophenyl}-5-(fluoromethoxy)pyrazine-2-carboxamide
Descriptor: Beta-secretase 1, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Tadano, G, Komano, K, Yoshida, S, Suzuki, S, Nakahara, K, Fuchino, K, Fujimoto, K, Matsuoka, E, Yamamoto, T, Asada, N, Ito, H, Sakaguchi, G, Kanegawa, N, Kido, Y, Ando, S, Fukushima, T, Teisman, A, Urmaliya, V, Dhuyvetter, D, Borghys, H, Bergh, A.V.D, Austin, N, Gijsen, H.J.M, Yamano, Y, Iso, Y, Kusakabe, K.I.
Deposit date:2019-04-08
Release date:2019-10-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of an Extremely Potent Thiazine-Based beta-Secretase Inhibitor with Reduced Cardiovascular and Liver Toxicity at a Low Projected Human Dose.
J.Med.Chem., 62, 2019
1YA9
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Crystal Structure of the 22kDa N-Terminal Fragment of Mouse Apolipoprotein E
Descriptor: Apolipoprotein E
Authors:Peters-Libeu, C.A, Rutenber, E, Newhouse, Y, Hatters, D.M, Weisgraber, K.H.
Deposit date:2004-12-17
Release date:2005-06-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Engineering conformational destabilization into mouse apolipoprotein E. A model for a unique property of human apolipoprotein E4
J.Biol.Chem., 280, 2005
1IOJ
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HUMAN APOLIPOPROTEIN C-I, NMR, 18 STRUCTURES
Descriptor: APOC-I
Authors:Rozek, A, Sparrow, J.T, Weisgraber, K.H, Cushley, R.J.
Deposit date:1998-05-12
Release date:1998-08-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Conformation of human apolipoprotein C-I in a lipid-mimetic environment determined by CD and NMR spectroscopy.
Biochemistry, 38, 1999
1I18
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SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF RIBOFLAVIN SYNTHASE FROM E. COLI
Descriptor: RIBOFLAVIN, RIBOFLAVIN SYNTHASE ALPHA CHAIN
Authors:Truffault, V, Coles, M, Diercks, T, Abelmann, K, Eberhardt, S, Luettgen, H, Bacher, A, Kessler, H.
Deposit date:2001-01-31
Release date:2001-09-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The solution structure of the N-terminal domain of riboflavin synthase.
J.Mol.Biol., 309, 2001

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