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PDB: 1498 results

9BDN
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80S ribosome with angiogenin and tRNAAla
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
Authors:Loveland, A.B, Korostelev, A.A.
Deposit date:2024-04-12
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural mechanism of angiogenin activation by the ribosome.
Nature, 630, 2024
9BDP
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80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
Authors:Loveland, A.B, Korostelev, A.A.
Deposit date:2024-04-12
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural mechanism of angiogenin activation by the ribosome.
Nature, 630, 2024
6CRZ
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SARS Spike Glycoprotein, Trypsin-cleaved, Stabilized variant, C3 symmetry
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin, ...
Authors:Kirchdoerfer, R.N, Wang, N, Pallesen, J, Turner, H.L, Cottrell, C.A, McLellan, J.S, Ward, A.B.
Deposit date:2018-03-19
Release date:2018-04-11
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Stabilized coronavirus spikes are resistant to conformational changes induced by receptor recognition or proteolysis.
Sci Rep, 8, 2018
6CS0
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SARS Spike Glycoprotein, Trypsin-cleaved, Stabilized variant, one S1 CTD in an upwards conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin, ...
Authors:Kirchdoerfer, R.N, Wang, N, Pallesen, J, Turner, H.L, Cottrell, C.A, McLellan, J.S, Ward, A.B.
Deposit date:2018-03-19
Release date:2018-04-11
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Stabilized coronavirus spikes are resistant to conformational changes induced by receptor recognition or proteolysis.
Sci Rep, 8, 2018
2WJM
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Lipidic sponge phase crystal structure of the photosynthetic reaction centre from Blastochloris viridis (low dose)
Descriptor: 15-cis-1,2-dihydroneurosporene, BACTERIOCHLOROPHYLL B, BACTERIOPHEOPHYTIN B, ...
Authors:Woehri, A.B, Wahlgren, W.Y, Malmerberg, E, Johansson, L.C, Neutze, R, Katona, G.
Deposit date:2009-05-27
Release date:2009-09-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Lipidic sponge phase crystal structure of a photosynthetic reaction center reveals lipids on the protein surface.
Biochemistry, 48, 2009
1T04
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Three dimensional structure of a humanized anti-IFN-Gamma Fab in C2 space group
Descriptor: Huzaf Antibody Heavy Chain, Huzaf Antibody Light Chain
Authors:Bourne, P.C, Terzyan, S.S, Cloud, G, Landolfi, N.F, Vasquez, M, Edmundson, A.B.
Deposit date:2004-04-07
Release date:2004-10-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Three-dimensional structures of a humanized anti-IFN-gamma Fab (HuZAF) in two crystal forms.
Acta Crystallogr.,Sect.D, 60, 2004
1T0F
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Crystal Structure of the TnsA/TnsC(504-555) complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, MAGNESIUM ION, MALONIC ACID, ...
Authors:Ronning, D.R, Li, Y, Perez, Z.N, Ross, P.D, Hickman, A.B, Craig, N.L, Dyda, F.
Deposit date:2004-04-08
Release date:2004-11-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The carboxy-terminal portion of TnsC activates the Tn7 transposase through a specific interaction with TnsA.
Embo J., 23, 2004
1T66
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The structure of FAB with intermediate affinity for fluorescein.
Descriptor: 2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID, immunoglobulin heavy chain, immunoglobulin light chain
Authors:Terzyan, S, Ramsland, P.A, Voss Jr, E.W, Herron, J.N, Edmundson, A.B.
Deposit date:2004-05-05
Release date:2004-05-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Three-dimensional Structures of Idiotypically Related Fabs with Intermediate and High Affinity for Fluorescein.
J.Mol.Biol., 339, 2004
1KNL
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Streptomyces lividans Xylan Binding Domain cbm13
Descriptor: ENDO-1,4-BETA-XYLANASE A, GLYCEROL
Authors:Notenboom, V, Boraston, A.B, Williams, S.J, Kilburn, D.G, Rose, D.R.
Deposit date:2001-12-19
Release date:2002-06-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:High-resolution crystal structures of the lectin-like xylan binding domain from Streptomyces lividans xylanase 10A with bound substrates reveal a novel mode of xylan binding.
Biochemistry, 41, 2002
1SZP
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A Crystal Structure of the Rad51 Filament
Descriptor: DNA repair protein RAD51, SULFATE ION
Authors:Conway, A.B, Lynch, T.W, Zhang, Y, Fortin, G.S, Symington, L.S, Rice, P.A.
Deposit date:2004-04-06
Release date:2004-07-13
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Crystal structure of a Rad51 filament.
Nat.Struct.Mol.Biol., 11, 2004
1TKR
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Human Dipeptidyl Peptidase IV/CD26 inhibited with Diisopropyl FluoroPhosphate
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Bjelke, J.R, Christensen, J, Branner, S, Wagtmann, N, Olsen, C, Kanstrup, A.B, Rasmussen, H.B.
Deposit date:2004-06-09
Release date:2004-07-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Tyrosine 547 Constitutes an Essential Part of the Catalytic Mechanism of Dipeptidyl Peptidase IV
J.Biol.Chem., 279, 2004
1T8I
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Human DNA Topoisomerase I (70 Kda) In Complex With The Poison Camptothecin and Covalent Complex With A 22 Base Pair DNA Duplex
Descriptor: 4-ETHYL-4-HYDROXY-1,12-DIHYDRO-4H-2-OXA-6,12A-DIAZA-DIBENZO[B,H]FLUORENE-3,13-DIONE, 5'-D(*(TGP)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3', ...
Authors:Staker, B.L, Feese, M.D, Cushman, M, Pommier, Y, Zembower, D, Stewart, L, Burgin, A.B.
Deposit date:2004-05-12
Release date:2005-05-31
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of three classes of anticancer agents bound to the human topoisomerase I-DNA covalent complex
J.Med.Chem., 48, 2005
1LV2
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Hepatocyte Nuclear Factor 4 is a Transcription Factor that Constitutively Binds Fatty Acids
Descriptor: Hepatocyte nuclear factor 4-gamma, PALMITIC ACID
Authors:Wisely, B, Miller, A.B, Davis, R.G, Spitzer, T, Shearer, B, Moore, J.T, Johnson, R, Sefler, A, Willson, T.M, Williams, S.P.
Deposit date:2002-05-24
Release date:2002-12-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Hepatocyte Nuclear Factor 4 Is a Transcription Factor that Constitutively Binds Fatty Acids.
Structure, 10, 2002
1MC9
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STREPROMYCES LIVIDANS XYLAN BINDING DOMAIN CBM13 IN COMPLEX WITH XYLOPENTAOSE
Descriptor: ENDO-1,4-BETA-XYLANASE A, GLYCEROL, SULFATE ION, ...
Authors:Notenboom, V, Boraston, A.B, Williams, S.J, Kilburn, D.G, Rose, D.R.
Deposit date:2002-08-06
Release date:2002-09-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High-resolution crystal structures of the lectin-like xylan binding domain from Streptomyces lividans xylanase 10A with bound substrates reveal a novel mode of xylan binding.
Biochemistry, 41, 2002
1MFI
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BU of 1mfi by Molmil
CRYSTAL STRUCTURE OF MACROPHAGE MIGRATION INHIBITORY FACTOR COMPLEXED WITH (E)-2-FLUORO-P-HYDROXYCINNAMATE
Descriptor: 2-FLUORO-3-(4-HYDROXYPHENYL)-2E-PROPENEOATE, PROTEIN (MACROPHAGE MIGRATION INHIBITORY FACTOR)
Authors:Taylor, A.B, Johnson Jr, W.H, Czerwinski, R.M, Whitman, C.P, Hackert, M.L.
Deposit date:1998-08-12
Release date:1999-06-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of macrophage migration inhibitory factor complexed with (E)-2-fluoro-p-hydroxycinnamate at 1.8 A resolution: implications for enzymatic catalysis and inhibition.
Biochemistry, 38, 1999
1LJ0
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Structure of quintuple mutant of the rat outer mitocondrial cytochrome b5.
Descriptor: Cytochrome B5 outer mitochondrial membrane isoform, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Cowley, A.B, Altuve, A, Kuchment, O, Terzyan, S, Zhang, X.C, Rivera, M, Benson, D.
Deposit date:2002-04-18
Release date:2002-11-20
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Toward engineering the stability and hemin binding properties of microsomal cytochromes b5 into rat outer mitochondrial cytochrome b5: Examining the influence of residues 25 and 71.
Biochemistry, 41, 2002
1N7X
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HUMAN SERUM TRANSFERRIN, N-LOBE Y45E MUTANT
Descriptor: CARBONATE ION, FE (III) ION, Serotransferrin
Authors:Adams, T.E, Mason, A.B, He, Q.Y, Halbrooks, P.J, Briggs, S.K, Smith, V.C, Macgillivray, R.T, Everse, S.J.
Deposit date:2002-11-18
Release date:2003-03-18
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:THE POSITION OF ARGININE 124 CONTROLS THE RATE OF IRON RELEASE FROM THE N-LOBE OF HUMAN SERUM TRANSFERRIN. A STRUCTURAL STUDY
J.Biol.Chem., 278, 2003
1NGX
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Chimeric Germline Fab 7g12 with jeffamine fragment bound
Descriptor: Germline Metal Chelatase Catalytic Antibody, Heavy chain, Light chain, ...
Authors:Yin, J, Andryski, S.E, Beuscher, A.B, Stevens, R.C, Schultz, P.G.
Deposit date:2002-12-18
Release date:2003-03-18
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural evidence for substrate strain in antibody catalysis
Proc.Natl.Acad.Sci.USA, 100, 2003
1M55
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Catalytic domain of the Adeno Associated Virus type 5 Rep protein
Descriptor: CHLORIDE ION, Rep protein, ZINC ION
Authors:Hickman, A.B, Ronning, D.R, Kotin, R.M, Dyda, F.
Deposit date:2002-07-08
Release date:2002-08-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural unity among viral origin binding proteins: crystal structure of the nuclease domain of adeno-associated virus Rep.
Mol.Cell, 10, 2002
1M6X
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Flpe-Holliday Junction Complex
Descriptor: Flp recombinase, Symmetrized FRT site
Authors:Conway, A.B, Chen, Y, Rice, P.A.
Deposit date:2002-07-17
Release date:2003-02-04
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Plasticity of the Flp-Holliday Junction Complex
J.Mol.Biol., 326, 2003
1KTZ
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Crystal Structure of the Human TGF-beta Type II Receptor Extracellular Domain in Complex with TGF-beta3
Descriptor: TGF-beta Type II Receptor, TRANSFORMING GROWTH FACTOR BETA 3
Authors:Hart, P.J, Deep, S, Taylor, A.B, Shu, Z, Hinck, C.S, Hinck, A.P.
Deposit date:2002-01-18
Release date:2002-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of the human TbetaR2 ectodomain--TGF-beta3 complex.
Nat.Struct.Biol., 9, 2002
1N7W
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Crystal Structure of Human Serum Transferrin, N-Lobe L66W mutant
Descriptor: CARBONATE ION, FE (III) ION, Serotransferrin
Authors:Adams, T.E, Mason, A.B, He, Q.Y, Halbrooks, P.J, Briggs, S.K, Smith, V.C, MacGillivray, R.T, Everse, S.J.
Deposit date:2002-11-18
Release date:2003-03-18
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Position of Arginine 124 Controls the Rate of Iron Release from the N-lobe of Human Serum Transferrin. A Structural Study
J.Biol.Chem., 278, 2003
1NH3
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Human Topoisomerase I Ara-C Complex
Descriptor: 5'-D(*(GNG)P*GP*AP*AP*AP*AP*AP*UP*UP*UP*UP*T)-3', 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*UP*(UBB))-3', 5'-D(*AP*AP*AP*AP*AP*TP*UP*UP*UP*UP*CP*(CAR)P*AP*AP*GP*UP*CP*UP*UP*UP*UP*T)-3', ...
Authors:Chrencik, J.E, Burgin, A.B, Pommier, Y, Stewart, L, Redinbo, M.R.
Deposit date:2002-12-18
Release date:2003-03-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Impact of the Leukemia Drug 1-beta-D-Arabinofuranosylcytosine (Ara-C) on the Covalent Human Topoisomerase I-DNA Complex
J.Biol.Chem., 278, 2003
1N84
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HUMAN SERUM TRANSFERRIN, N-LOBE
Descriptor: CARBONATE ION, FE (III) ION, Serotransferrin
Authors:Adams, T.E, Mason, A.B, He, Q.Y, Halbrooks, P.J, Briggs, S.K, Smith, V.C, Macgillivray, R.T, Everse, S.J.
Deposit date:2002-11-19
Release date:2003-03-18
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:THE POSITION OF ARGININE 124 CONTROLS THE RATE OF IRON RELEASE FROM THE N-LOBE OF HUMAN SERUM TRANSFERRIN. A STRUCTURAL STUDY
J.Biol.Chem., 278, 2003
1NAE
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Structure of CsCBM6-3 from Clostridium stercorarium in complex with xylotriose
Descriptor: CALCIUM ION, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, putative xylanase
Authors:Boraston, A.B, Notenboom, V, Warren, R.A.J, Kilburn, D.G, Rose, D.R, Davies, G.
Deposit date:2002-11-27
Release date:2003-03-18
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure and ligand binding of carbohydrate-binding module CsCBM6-3 reveals similarities with fucose-specific lectins and "galactose-binding" domains
J.Mol.Biol., 327, 2003

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