Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89346 results

3LZR
DownloadVisualize
BU of 3lzr by Molmil
Crystal Structure Analysis of Manganese treated P19 protein from Campylobacter jejuni at 2.73 A at pH 9 and Manganese peak wavelength (1.893 A)
Descriptor: COPPER (II) ION, MANGANESE (II) ION, P19 protein, ...
Authors:Doukov, T.I, Chan, A.C.K, Scofield, M, Ramin, A.B, Tom-Yew, S.A.L, Murphy, M.E.P.
Deposit date:2010-03-01
Release date:2010-07-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Structure and Function of P19, a High-Affinity Iron Transporter of the Human Pathogen Campylobacter jejuni.
J.Mol.Biol., 401, 2010
7RR0
DownloadVisualize
BU of 7rr0 by Molmil
SARS-CoV-2 receptor binding domain bound to Fab PDI 222
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PDI 222 Fab Heavy Chain, PDI 222 Fab Light Chain, ...
Authors:Pymm, P, Glukhova, A, Black, K.A, Tham, W.H.
Deposit date:2021-08-08
Release date:2021-10-06
Last modified:2021-10-27
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Landscape of human antibody recognition of the SARS-CoV-2 receptor binding domain.
Cell Rep, 37, 2021
8OH8
DownloadVisualize
BU of 8oh8 by Molmil
Crystal structure of the cysteine-rich Gallus gallus urate oxidase in complex with the 8-azaxanthine inhibitor under reducing conditions (space group P 21 21 21)
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, CHLORIDE ION, ...
Authors:Di Palma, M, Chegkazi, M, Bui, S, Mori, G, Percudani, R, Steiner, R.A.
Deposit date:2023-03-20
Release date:2024-01-17
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Cysteine Enrichment Mediates Co-Option of Uricase in Reptilian Skin and Transition to Uricotelism.
Mol.Biol.Evol., 40, 2023
8OIH
DownloadVisualize
BU of 8oih by Molmil
Crystal structure of the cysteine-rich Gallus gallus urate oxidase in complex with the 8-azaxanthine inhibitor under oxidising conditions (space group C 2 2 21)
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, BROMIDE ION, ...
Authors:Di Palma, M, Chegkazi, M, Bui, S, Mori, G, Percudani, R, Steiner, R.A.
Deposit date:2023-03-22
Release date:2024-01-17
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Cysteine Enrichment Mediates Co-Option of Uricase in Reptilian Skin and Transition to Uricotelism.
Mol.Biol.Evol., 40, 2023
8OIW
DownloadVisualize
BU of 8oiw by Molmil
Crystal structure of the cysteine-rich Gallus gallus urate oxidase in complex with the 8-azaxanthine inhibitor under oxidising conditions (space group P 21 21 21)
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, CHLORIDE ION, ...
Authors:Di Palma, M, Chegkazi, M, Bui, S, Mori, G, Percudani, R, Steiner, R.A.
Deposit date:2023-03-23
Release date:2024-01-17
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Cysteine Enrichment Mediates Co-Option of Uricase in Reptilian Skin and Transition to Uricotelism.
Mol.Biol.Evol., 40, 2023
8OUF
DownloadVisualize
BU of 8ouf by Molmil
The H/ACA RNP lobe of human telomerase with the dyskerin thumb loop in an open conformation
Descriptor: H/ACA ribonucleoprotein complex subunit 1, H/ACA ribonucleoprotein complex subunit 2, H/ACA ribonucleoprotein complex subunit 3, ...
Authors:Ghanim, G.E, Sekne, Z, van Roon, A.M.M, Balch, S, Nguyen, T.H.D.
Deposit date:2023-04-22
Release date:2024-01-31
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:2.7 angstrom cryo-EM structure of human telomerase H/ACA ribonucleoprotein.
Nat Commun, 15, 2024
8P0E
DownloadVisualize
BU of 8p0e by Molmil
Rubella virus p150 macro domain in complex with ADP-ribose
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, Non-structural polyprotein p200
Authors:Stoll, G.A, Modis, Y.
Deposit date:2023-05-10
Release date:2024-01-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Crystal structure and biochemical activity of the macrodomain from rubella virus p150.
J.Virol., 98, 2024
5AFI
DownloadVisualize
BU of 5afi by Molmil
2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Fischer, N, Neumann, P, Konevega, A.L, Bock, L.V, Ficner, R, Rodnina, M.V, Stark, H.
Deposit date:2015-01-22
Release date:2015-03-11
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of the E. coli ribosome-EF-Tu complex at <3 angstrom resolution by Cs-corrected cryo-EM.
Nature, 520, 2015
6PU6
DownloadVisualize
BU of 6pu6 by Molmil
CobT from Methanocaldococcus jannaschii in complex with Alpha-Ribozole 5'-Phosphate, Nicotinic Acid, and Nicotinic Acid Mononucleotide
Descriptor: ALPHA-RIBAZOLE-5'-PHOSPHATE, NICOTINATE MONONUCLEOTIDE, NICOTINIC ACID, ...
Authors:Schwarzwalder, A.H, Jeter, V.L, Vecellio, A.A, Erpenbach, E, Escalante-Semerena, J.C, Rayment, I.
Deposit date:2019-07-17
Release date:2020-07-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.293 Å)
Cite:Structural studies of the phosphoribosyltransferase involved in cobamide biosynthesis in methanogenic archaea and cyanobacteria.
Sci Rep, 12, 2022
7AQT
DownloadVisualize
BU of 7aqt by Molmil
NMR2 structure of BRD4-BD2 in complex with iBET-762
Descriptor: 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide, Bromodomain-containing protein 4
Authors:Orts, J, Torres, F, Milbradt, A.G, Walser, R.
Deposit date:2020-10-23
Release date:2022-03-02
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:NMR Molecular Replacement Provides New Insights into Binding Modes to Bromodomains of BRD4 and TRIM24.
J.Med.Chem., 65, 2022
6CBY
DownloadVisualize
BU of 6cby by Molmil
Crystal structure of human SET and MYND Domain Containing protein 2 with MTF9975
Descriptor: N-lysine methyltransferase SMYD2, ZINC ION, [3-(4-amino-6-methyl-1H-imidazo[4,5-c]pyridin-1-yl)-3-methylazetidin-1-yl][1-({1-[(1R)-cyclohept-2-en-1-yl]piperidin-4-yl}methyl)-1H-pyrrol-3-yl]methanone
Authors:ZENG, H, DONG, A, Hutchinson, A, Seitova, A, TATLOCK, J, KUMPF, R, OWEN, A, TAYLOR, A, Casimiro-Garcia, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, BROWN, P.J, WU, H, Structural Genomics Consortium (SGC)
Deposit date:2018-02-05
Release date:2018-03-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Selective, Small-Molecule Co-Factor Binding Site Inhibition of a Su(var)3-9, Enhancer of Zeste, Trithorax Domain Containing Lysine Methyltransferase.
J.Med.Chem., 62, 2019
8P8S
DownloadVisualize
BU of 8p8s by Molmil
Recombinant Ym2 crystal structure
Descriptor: 1,2-ETHANEDIOL, Chitinase-like protein 4
Authors:Verschueren, K.H.G, Verstraete, K, Heyndrickx, I, Smole, U, Aegerter, A, Savvides, S.N, Lambrecht, B.N.
Deposit date:2023-06-02
Release date:2024-01-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Ym1 protein crystals promote type 2 immunity.
Elife, 12, 2024
8A43
DownloadVisualize
BU of 8a43 by Molmil
Human RNA polymerase I
Descriptor: DNA-directed RNA polymerase I subunit RPA1, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA2, ...
Authors:Daiss, J.L, Pilsl, M, Straub, K, Bleckmann, A, Hoecherl, M, Heiss, F.B, Abascal-Palacios, G, Ramsay, E, Tluckova, K, Mars, J.C, Fuertges, T, Bruckmann, A, Rudack, T, Bernecky, C, Lamour, V, Panov, K, Vannini, A, Moss, T, Engel, C.
Deposit date:2022-06-10
Release date:2022-08-31
Last modified:2022-11-02
Method:ELECTRON MICROSCOPY (4.09 Å)
Cite:The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans.
Life Sci Alliance, 5, 2022
7QIO
DownloadVisualize
BU of 7qio by Molmil
Homology model of myosin neck domain in skeletal sarcomere
Descriptor: Myosin light chain 1/3, skeletal muscle isoform, Myosin regulatory light chain 2, ...
Authors:Wang, Z, Grange, M, Pospich, S, Wagner, T, Kho, A.L, Gautel, M, Raunser, S.
Deposit date:2021-12-15
Release date:2022-02-16
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Structures from intact myofibrils reveal mechanism of thin filament regulation through nebulin.
Science, 375, 2022
6XWP
DownloadVisualize
BU of 6xwp by Molmil
Structure of glutamate transporter homologue GltTk in unsaturated conditions - outward-outward-inward configuration
Descriptor: ASPARTIC ACID, Proton/glutamate symporter, SDF family
Authors:Arkhipova, V, Slotboom, D.J, Guskov, A.
Deposit date:2020-01-24
Release date:2020-03-04
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Structural ensemble of a glutamate transporter homologue in lipid nanodisc environment.
Nat Commun, 11, 2020
6TP6
DownloadVisualize
BU of 6tp6 by Molmil
Crystal structure of the Orexin-1 receptor in complex with filorexant
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, CHLORIDE ION, Orexin receptor type 1, ...
Authors:Rappas, M, Ali, A, Bennett, K.A, Brown, J.D, Bucknell, S.J, Congreve, M, Cooke, R.M, Cseke, G, de Graaf, C, Dore, A.S, Errey, J.C, Jazayeri, A, Marshall, F.H, Mason, J.S, Mould, R, Patel, J.C, Tehan, B.G, Weir, M, Christopher, J.A.
Deposit date:2019-12-12
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.338 Å)
Cite:Comparison of Orexin 1 and Orexin 2 Ligand Binding Modes Using X-ray Crystallography and Computational Analysis.
J.Med.Chem., 63, 2020
6PXK
DownloadVisualize
BU of 6pxk by Molmil
3.65 Angstroms resolution structure of HslU with an axial-channel plug
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent protease ATPase subunit HslU, SULFATE ION, ...
Authors:Baytshtok, V, Grant, R.A, Sauer, R.T.
Deposit date:2019-07-26
Release date:2020-07-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.647 Å)
Cite:Heat activates the AAA+ HslUV protease by melting an axial autoinhibitory plug.
Cell Rep, 34, 2021
8A56
DownloadVisualize
BU of 8a56 by Molmil
Coenzyme A-persulfide reductase (CoAPR) from Enterococcus faecalis
Descriptor: 1,2-ETHANEDIOL, 3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE, Coenzyme A-persulfide reductase, ...
Authors:Costa, S.S, Walsh, B.J, Giedroc, D.P, Brito, J.A.
Deposit date:2022-06-14
Release date:2022-09-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Metabolic and Structural Insights into Hydrogen Sulfide Mis-Regulation in Enterococcus faecalis.
Antioxidants, 11, 2022
6TQ4
DownloadVisualize
BU of 6tq4 by Molmil
Crystal structure of the Orexin-1 receptor in complex with Compound 16
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, 2-[1-(phenylsulfonyl)-1,8-diazaspiro[4.5]decan-8-yl]-1,3-benzoxazole, Orexin receptor type 1, ...
Authors:Rappas, M, Ali, A, Bennett, K.A, Brown, J.D, Bucknell, S.J, Congreve, M, Cooke, R.M, Cseke, G, de Graaf, C, Dore, A.S, Errey, J.C, Jazayeri, A, Marshall, F.H, Mason, J.S, Mould, R, Patel, J.C, Tehan, B.G, Weir, M, Christopher, J.A.
Deposit date:2019-12-16
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.299 Å)
Cite:Comparison of Orexin 1 and Orexin 2 Ligand Binding Modes Using X-ray Crystallography and Computational Analysis.
J.Med.Chem., 63, 2020
4Z12
DownloadVisualize
BU of 4z12 by Molmil
Recombinantly expressed latent aurone synthase (polyphenol oxidase) co-crystallized with hexatungstotellurate(VI)
Descriptor: 6-tungstotellurate(VI), Aurone synthase, COPPER (II) ION, ...
Authors:Molitor, C, Mauracher, S.G, Rompel, A.
Deposit date:2015-03-26
Release date:2016-03-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Aurone synthase is a catechol oxidase with hydroxylase activity and provides insights into the mechanism of plant polyphenol oxidases.
Proc.Natl.Acad.Sci.USA, 113, 2016
6TEP
DownloadVisualize
BU of 6tep by Molmil
Crystal structure of a galactokinase from Bifidobacterium infantis in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Keenan, T, Parmeggiani, F, Fontenelle, C.Q, Malassis, J, Vendeville, J, Offen, W.A, Both, P, Huang, K, Marchesi, A, Heyam, A, Young, C, Charnock, S, Davies, G.J, Linclau, B, Flitsch, S.L, Fascione, M.A.
Deposit date:2019-11-12
Release date:2020-06-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Profiling Substrate Promiscuity of Wild-Type Sugar Kinases for Multi-fluorinated Monosaccharides.
Cell Chem Biol, 27, 2020
6N02
DownloadVisualize
BU of 6n02 by Molmil
CO-bound Sperm Whale Myoglobin, room temperature structure, first 2 degrees of 5 degree total oscillation
Descriptor: CARBON MONOXIDE, Myoglobin, CO-bound, ...
Authors:Finke, A.D, Wierman, J.L, Pare-Labrosse, O, Sarrachini, A, Besaw, J, Mehrabi, P, Gruner, S.M, Miller, R.J.D.
Deposit date:2018-11-06
Release date:2019-03-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Fixed-target serial oscillation crystallography at room temperature.
IUCrJ, 6, 2019
7N0N
DownloadVisualize
BU of 7n0n by Molmil
Activated state of 2-APB-bound wildtype rat TRPV2 in nanodiscs
Descriptor: Transient receptor potential cation channel subfamily V member 2
Authors:Pumroy, R.A, Protopopova, A.D, Gallo, P.N, Moiseenkova-Bell, V.Y.
Deposit date:2021-05-25
Release date:2022-05-04
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (4.15 Å)
Cite:Structural insights into TRPV2 activation by small molecules.
Nat Commun, 13, 2022
8T3J
DownloadVisualize
BU of 8t3j by Molmil
Crystal structure of native exfoliative toxin C (ExhC) from Mammaliicoccus sciuri
Descriptor: Exfoliative toxin C
Authors:Calil, F.A, Gismene, C, Hernandez Gonzalez, J.E, Ziem Nascimento, A.F, Santisteban, A.R.N, Arni, R.K, Barros Mariutti, R.
Deposit date:2023-06-07
Release date:2023-11-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.705 Å)
Cite:Necrotic activity of ExhC from Mammaliicoccus sciuri is mediated by specific amino acid residues.
Int.J.Biol.Macromol., 254, 2024
7ZJP
DownloadVisualize
BU of 7zjp by Molmil
Optimization of TEAD P-Site Binding Fragment Hit into In Vivo Active Lead MSC-4106
Descriptor: 2-methyl-4-[4-(trifluoromethyl)phenyl]pyrazolo[3,4-b]indole-7-carboxylic acid, SULFATE ION, Transcriptional enhancer factor TEF-1
Authors:Freire, F, Heinrich, T, Petersson, C, Schneider, R, Garg, S, Schwarz, D, Gunera, J, Seshire, A, Koetzner, L, Schlesiger, S, Musil, D, Schilke, H, Doerfel, B, Diehl, P, Boepple, P, Lemos, A.R, Sousa, P.M.F, Freire, F, Bandeiras, T.M, Carswell, E, Pearson, N, Sirohi, S, Hooker, M, Trivier, E, Broome, R, Balsiger, A, Crowden, A, Dillon, C, Wienke, D.
Deposit date:2022-04-11
Release date:2022-07-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Optimization of TEAD P-Site Binding Fragment Hit into In Vivo Active Lead MSC-4106 .
J.Med.Chem., 65, 2022

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon