Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89035 results

7R7B
DownloadVisualize
BU of 7r7b by Molmil
1.50 Angstroem Crystal Structure of FeoA from Bacteroides fragilis
Descriptor: Ferrous iron transport protein B, GLYCEROL, PHOSPHATE ION
Authors:Sestok, A.E, Smith, A.T.
Deposit date:2021-06-24
Release date:2022-04-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A fusion of the Bacteroides fragilis ferrous iron import proteins reveals a role for FeoA in stabilizing GTP-bound FeoB.
J.Biol.Chem., 298, 2022
8SJF
DownloadVisualize
BU of 8sjf by Molmil
Apo Structure of Computationally Designed Homotrimer Tet4
Descriptor: Tet4
Authors:Hoffnagle, A.H, Tezcan, F.A.
Deposit date:2023-04-18
Release date:2023-07-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Atomically Accurate Design of Metalloproteins with Predefined Coordination Geometries.
J.Am.Chem.Soc., 145, 2023
6DCN
DownloadVisualize
BU of 6dcn by Molmil
Bcl-xL complex with Beclin 1 BH3 domain T108pThr
Descriptor: BCL-xl protein, Beclin-1
Authors:Lee, E.F, Smith, B.J, Smith, N.A, Yao, S, Fairlie, W.D.
Deposit date:2018-05-07
Release date:2018-05-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.444 Å)
Cite:Structural insights into BCL2 pro-survival protein interactions with the key autophagy regulator BECN1 following phosphorylation by STK4/MST1.
Autophagy, 15, 2019
8SJG
DownloadVisualize
BU of 8sjg by Molmil
Zn-Bound Structure of Computationally Designed Homotrimer Tet4
Descriptor: Tet4, ZINC ION
Authors:Hoffnagle, A.M, Tezcan, F.A.
Deposit date:2023-04-18
Release date:2023-07-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Atomically Accurate Design of Metalloproteins with Predefined Coordination Geometries.
J.Am.Chem.Soc., 145, 2023
8SJI
DownloadVisualize
BU of 8sji by Molmil
Apo Structure of Computationally Designed Homotrimer TP1
Descriptor: CALCIUM ION, CHLORIDE ION, Topoisomerase 1
Authors:Hoffnagle, A.M, Tezcan, F.A.
Deposit date:2023-04-18
Release date:2023-07-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Atomically Accurate Design of Metalloproteins with Predefined Coordination Geometries.
J.Am.Chem.Soc., 145, 2023
4UY4
DownloadVisualize
BU of 4uy4 by Molmil
1.86 A structure of human Spindlin-4 protein in complex with histone H3K4me3 peptide
Descriptor: GLYCEROL, HISTONE H3K4ME3, SPINDLIN-4
Authors:Talon, R, Gileadi, C, Johansson, C, Burgess-Brown, N, Shrestha, L, von Delft, F, Krojer, T, Fairhead, M, Bountra, C, Arrowsmith, C.H, Edwards, A, Oppermann, U.
Deposit date:2014-08-28
Release date:2014-09-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.862 Å)
Cite:1.86 A Structure of Human Spindlin-4 Protein in Complex with Histone H3K4Me3 Peptide
To be Published
4V6X
DownloadVisualize
BU of 4v6x by Molmil
Structure of the human 80S ribosome
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Anger, A.M, Armache, J.-P, Berninghausen, O, Habeck, M, Subklewe, M, Wilson, D.N, Beckmann, R.
Deposit date:2013-02-27
Release date:2014-07-09
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (5 Å)
Cite:Structures of the human and Drosophila 80S ribosome.
Nature, 497, 2013
7RKC
DownloadVisualize
BU of 7rkc by Molmil
Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633
Descriptor: ACETATE ION, D_3_633
Authors:Kennedy, M.A, Stoddard, B.L, Hicks, D.R, Bera, A.K.
Deposit date:2021-07-22
Release date:2022-05-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:De novo design of protein homodimers containing tunable symmetric protein pockets.
Proc.Natl.Acad.Sci.USA, 119, 2022
7R1K
DownloadVisualize
BU of 7r1k by Molmil
Phosphorylated Bacillus pumilus Lipase A
Descriptor: DIETHYL PHOSPHONATE, Lipase, OXALOACETATE ION
Authors:Lund, B.A.
Deposit date:2022-02-03
Release date:2022-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and Mechanism of a Cold-Adapted Bacterial Lipase
Biochemistry, 61, 2022
4V7A
DownloadVisualize
BU of 4v7a by Molmil
E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H.
Deposit date:2013-10-14
Release date:2014-07-09
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Energy barriers and driving forces in tRNA translocation through the ribosome.
Nat.Struct.Mol.Biol., 20, 2013
8STH
DownloadVisualize
BU of 8sth by Molmil
human STING with diABZI agonist 15
Descriptor: 1-[(2E)-4-{5-carbamoyl-2-[(4-ethyl-2-methyl-1,3-oxazole-5-carbonyl)amino]-7-(3-hydroxypropoxy)-1H-benzimidazol-1-yl}but-2-en-1-yl]-2-[(4-ethyl-2-methyl-1,3-oxazole-5-carbonyl)amino]-7-methoxy-1H-benzimidazole-5-carboxamide, Stimulator of interferon genes protein
Authors:Duvall, J.R, Bukhalid, R.A.
Deposit date:2023-05-10
Release date:2023-07-26
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Discovery and Optimization of a STING Agonist Platform for Application in Antibody Drug Conjugates.
J.Med.Chem., 66, 2023
4V9P
DownloadVisualize
BU of 4v9p by Molmil
Control of ribosomal subunit rotation by elongation factor G
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Pulk, A, Cate, J.H.D.
Deposit date:2013-05-03
Release date:2014-07-09
Last modified:2014-12-17
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Control of ribosomal subunit rotation by elongation factor G.
Science, 340, 2013
7REW
DownloadVisualize
BU of 7rew by Molmil
Crystal Structure of IL-13 in complex with MMAb3 Fab
Descriptor: IL13, anti-cyno interleukin 13 Fab heavy chain, anti-cyno interleukin 13 Fab light chain
Authors:Sudom, A, Min, X.
Deposit date:2021-07-13
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Development of a potent high-affinity human therapeutic antibody via novel application of recombination signal sequence-based affinity maturation.
J.Biol.Chem., 298, 2022
7R6Y
DownloadVisualize
BU of 7r6y by Molmil
E117K mutant pyruvate kinase from rabbit muscle
Descriptor: ACETATE ION, MAGNESIUM ION, OXALATE ION, ...
Authors:Rodriguez-Romero, A, Rodriguez-Hernandez, A.
Deposit date:2021-06-24
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The K + -Dependent and -Independent Pyruvate Kinases Acquire the Active Conformation by Different Mechanisms.
Int J Mol Sci, 23, 2022
2XFL
DownloadVisualize
BU of 2xfl by Molmil
Induced-fit and allosteric effects upon polyene binding revealed by crystal structures of the Dynemicin thioesterase
Descriptor: DYNE7
Authors:Liew, C.W, Sharff, A, Kotaka, M, Kong, R, Sun, H, Bricogne, G, Liang, Z, Lescar, J.
Deposit date:2010-05-26
Release date:2010-10-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Induced-Fit Upon Ligand Binding Revealed by Crystal Structures of the Hot-Dog Fold Thioesterase in Dynemicin Biosynthesis.
J.Mol.Biol., 404, 2010
6DL7
DownloadVisualize
BU of 6dl7 by Molmil
Human mitochondrial ClpP in complex with ONC201 (TIC10)
Descriptor: 7-benzyl-4-[(2-methylphenyl)methyl]-6,7,8,9-tetrahydroimidazo[1,2-a]pyrido[3,4-e]pyrimidin-5(4H)-one, ATP-dependent Clp protease proteolytic subunit, mitochondrial
Authors:Halgas, O, Zarabi, S.F, Schimmer, A, Pai, E.F.
Deposit date:2018-05-31
Release date:2019-05-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mitochondrial ClpP-Mediated Proteolysis Induces Selective Cancer Cell Lethality.
Cancer Cell, 35, 2019
8STI
DownloadVisualize
BU of 8sti by Molmil
human STING with agonist XMT-1616
Descriptor: 3-[(2E)-4-{5-carbamoyl-2-[(4-ethyl-2-methyl-1,3-oxazole-5-carbonyl)amino]-7-(3-hydroxypropoxy)-1H-benzimidazol-1-yl}but-2-en-1-yl]-2-[(4-ethyl-2-methyl-1,3-oxazole-5-carbonyl)amino]-3H-imidazo[4,5-b]pyridine-6-carboxamide, Stimulator of interferon genes protein
Authors:Duvall, J.R, Bukhalid, R.A.
Deposit date:2023-05-10
Release date:2023-07-26
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Discovery and Optimization of a STING Agonist Platform for Application in Antibody Drug Conjugates.
J.Med.Chem., 66, 2023
1I1H
DownloadVisualize
BU of 1i1h by Molmil
CRYSTAL STRUCTURE ANALYSIS OF PRECORRIN-8X METHYLMUTASE COMPLEX WITH HYDROGENOBYRINIC ACID
Descriptor: HYDROGENOBYRINIC ACID, PRECORRIN-8X METHYLMUTASE
Authors:Shipman, L.W, Li, D, Roessner, C.A, Scott, A.I, Sacchettini, J.C.
Deposit date:2001-02-01
Release date:2001-07-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of precorrin-8x methyl mutase.
Structure, 9, 2001
4UXB
DownloadVisualize
BU of 4uxb by Molmil
Human ARTD1 (PARP1) - Catalytic domain in complex with inhibitor PJ34
Descriptor: N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE, POLY ADP-RIBOSE POLYMERASE 1, SULFATE ION
Authors:Tresaugues, L, Thorsell, A.G, Karlberg, T, Schuler, H.
Deposit date:2014-08-21
Release date:2015-09-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:Structural Basis for Potency and Promiscuity in Poly(ADP-ribose) Polymerase (PARP) and Tankyrase Inhibitors.
J. Med. Chem., 60, 2017
6DQL
DownloadVisualize
BU of 6dql by Molmil
Crystal structure of Regulator of Proteinase B RopB complexed with SIP
Descriptor: Regulator of Proteinase B RopB, SpeB-inducing peptide (SIP)
Authors:Do, H, Makthal, N, VanderWal, A.R, Olsen, R.J, Musser, J.M, Kumaraswami, M.
Deposit date:2018-06-11
Release date:2019-05-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Environmental pH and peptide signaling control virulence of Streptococcus pyogenes via a quorum-sensing pathway.
Nat Commun, 10, 2019
3TX9
DownloadVisualize
BU of 3tx9 by Molmil
OYE1 complexed with 2-(Hydroxymethyl)-cyclopent-2-enone
Descriptor: 2-(hydroxymethyl)cyclopent-2-en-1-one, FLAVIN MONONUCLEOTIDE, MAGNESIUM ION, ...
Authors:Pompeu, Y.A, Stewart, J.D.
Deposit date:2011-09-22
Release date:2011-10-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Studies of Enantioselectivity in OYE1
To be Published
7R4R
DownloadVisualize
BU of 7r4r by Molmil
The SARS-CoV-2 spike in complex with the 1.10 neutralizing nanobody
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Camel-derived nanobody 1.10, ...
Authors:Casasnovas, J.M, Melero, R, Arranz, R, Fernandez, L.A.
Deposit date:2022-02-09
Release date:2022-06-08
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Nanobodies Protecting From Lethal SARS-CoV-2 Infection Target Receptor Binding Epitopes Preserved in Virus Variants Other Than Omicron.
Front Immunol, 13, 2022
4UUN
DownloadVisualize
BU of 4uun by Molmil
Trichomonas vaginalis lactate dehydrogenase in complex with NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, L-LACTATE DEHYDROGENASE
Authors:Steindel, P.A, Chen, E.H, Theobald, D.L.
Deposit date:2014-07-29
Release date:2015-08-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Gradual Neofunctionalization in the Convergent Evolution of Trichomonad Lactate and Malate Dehydrogenases.
Protein Sci., 25, 2016
7QZD
DownloadVisualize
BU of 7qzd by Molmil
Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikF with an engineered HMA domain of Pikp-1 (Pikp-SNK-EKE) from rice (Oryza sativa)
Descriptor: Avr-Pik, Resistance protein Pikp-1
Authors:Maidment, J.H.R, Franceschetti, M, Longya, A, Banfield, M.J.
Deposit date:2022-01-31
Release date:2022-06-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Effector target-guided engineering of an integrated domain expands the disease resistance profile of a rice NLR immune receptor.
Elife, 12, 2023
3TYJ
DownloadVisualize
BU of 3tyj by Molmil
Bacillus collagen-like protein of anthracis P159S mutant
Descriptor: BclA protein
Authors:Kirchdoerfer, R.N, Herrin, B.R, Han, B.W, Turnbough Jr, C.L, Cooper, M.D, Wilson, I.A.
Deposit date:2011-09-26
Release date:2012-03-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Variable Lymphocyte Receptor Recognition of the Immunodominant Glycoprotein of Bacillus anthracis Spores.
Structure, 20, 2012

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon