Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89832 results

6VCG
DownloadVisualize
BU of 6vcg by Molmil
Crystal structure of Nitrosotalea devanaterra carotenoid cleavage dioxygenase, cobalt form
Descriptor: CHLORIDE ION, COBALT (II) ION, SODIUM ION, ...
Authors:Daruwalla, A, Shi, W, Kiser, P.D.
Deposit date:2019-12-20
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for carotenoid cleavage by an archaeal carotenoid dioxygenase.
Proc.Natl.Acad.Sci.USA, 117, 2020
5XFE
DownloadVisualize
BU of 5xfe by Molmil
Luciferin-regenerating enzyme solved by SAD using XFEL (refined against 11,000 patterns)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION, ...
Authors:Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
Deposit date:2017-04-10
Release date:2017-08-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
1K5A
DownloadVisualize
BU of 1k5a by Molmil
Crystal structure of human angiogenin double variant I119A/F120A
Descriptor: Angiogenin
Authors:Leonidas, D.D, Shapiro, R, Subbarao, G.V, Russo, A, Acharya, K.R.
Deposit date:2001-10-10
Release date:2002-03-20
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Crystallographic studies on the role of the C-terminal segment of human angiogenin in defining enzymatic potency.
Biochemistry, 41, 2002
5O1P
DownloadVisualize
BU of 5o1p by Molmil
Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase.
Descriptor: 1,2-ETHANEDIOL, Alpha-aminoadipic semialdehyde synthase, mitochondrial, ...
Authors:Kopec, J, Rembeza, E, Pena, I.A, Williams, E, Velupillai, S, Kupinska, K, Strain-Damerell, C, Goubin, S, Talon, R, Collins, P, Krojer, T, Burgess-Brown, N, Arrowsmith, C, Edwards, A, Bountra, C, von Delft, F, Arruda, P, Yue, W.W.
Deposit date:2017-05-18
Release date:2017-06-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase.
To Be Published
7M9Z
DownloadVisualize
BU of 7m9z by Molmil
HIV-1 Protease (I84V) in Complex with TMC-126
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL [(1S,2R)-1-BENZYL-2-HYDROXY-3-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}PROPYL]CARBAMATE, Protease, SULFATE ION
Authors:Lockbaum, G.J, Schiffer, C.A.
Deposit date:2021-03-31
Release date:2022-04-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.828 Å)
Cite:HIV-1 Protease (I84V) in Complex with TMC-126
To Be Published
6G2D
DownloadVisualize
BU of 6g2d by Molmil
Citrate-induced acetyl-CoA carboxylase (ACC-Cit) filament at 5.4 A resolution
Descriptor: Acetyl-CoA carboxylase 1
Authors:Hunkeler, M, Hagmann, A, Stuttfeld, E, Chami, M, Stahlberg, H, Maier, T.
Deposit date:2018-03-23
Release date:2018-06-13
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (5.4 Å)
Cite:Structural basis for regulation of human acetyl-CoA carboxylase.
Nature, 558, 2018
6UPT
DownloadVisualize
BU of 6upt by Molmil
Tudor Domain of Tumor suppressor p53BP1 with MFP-2706
Descriptor: 2-((2-chlorobenzyl)thio)-4,5-dihydro-1H-imidazole, TP53-binding protein 1, UNKNOWN ATOM OR ION
Authors:The, J, Dong, A, Headey, S, Gunzburg, M, Doak, B, James, L.I, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Structural Genomics Consortium (SGC)
Deposit date:2019-10-18
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Tudor Domain of Tumor suppressor p53BP1 with MFP-2706
to be published
2HFB
DownloadVisualize
BU of 2hfb by Molmil
Crystal structure of selenomethionine-labelled RafE from Streptococcus pneumoniae
Descriptor: CHLORIDE ION, Sugar ABC transporter, sugar-binding protein
Authors:Paterson, N.G, Riboldi-Tunnicliffe, A, Mitchell, T.J, Isaacs, N.W.
Deposit date:2006-06-23
Release date:2007-06-05
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of selenomethionine-labelled RafE from Streptococcus pneumoniae
To be Published
8CCN
DownloadVisualize
BU of 8ccn by Molmil
Filamentous actin II from Plasmodium falciparum
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin-2, MAGNESIUM ION
Authors:Kursula, I, Lopez, A.J.
Deposit date:2023-01-27
Release date:2023-02-22
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure and function of Plasmodium actin II in the parasite mosquito stages.
Plos Pathog., 19, 2023
7SAH
DownloadVisualize
BU of 7sah by Molmil
Crystal Structure of LaG16 Nanobody bound to eGFP
Descriptor: Green fluorescent protein, LaG16
Authors:Cong, A.T.Q, Schellenberg, M.J.
Deposit date:2021-09-22
Release date:2022-09-14
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-efficiency recombinant protein purification using mCherry and YFP nanobody affinity matrices.
Protein Sci., 31, 2022
8CAG
DownloadVisualize
BU of 8cag by Molmil
Hypoxanthine-guanine phosphoribosyltransferase from E. coli
Descriptor: Hypoxanthine phosphoribosyltransferase, MAGNESIUM ION
Authors:Timofeev, V.I, Shevtsov, M.B, Abramchik, Y.A, Kostromina, M.A, Zayats, E.A, Kuranova, I.P, Esipov, R.S.
Deposit date:2023-01-24
Release date:2023-02-01
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Hypoxanthine-guanine phosphoribosyltransferase from E. coli
To Be Published
9BDD
DownloadVisualize
BU of 9bdd by Molmil
Cryo-EM Structure of Non-Cognate Substrate Bound in the Entry Site (ES) of Human Mitochondrial Transcription Elongation Complex
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA-directed RNA polymerase, mitochondrial, ...
Authors:Herbine, K.H, Nayak, A.R, Temiakov, D.
Deposit date:2024-04-11
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structural basis for substrate binding and selection by human mitochondrial RNA polymerase.
Nat Commun, 15, 2024
3I5I
DownloadVisualize
BU of 3i5i by Molmil
The crystal structure of squid myosin S1 in the presence of SO4 2-
Descriptor: CALCIUM ION, Myosin catalytic light chain LC-1, mantle muscle, ...
Authors:Yang, Y, Gourinath, S, Kovacs, M, Nyitray, L, Reutzel, R, Himmel, D.M, O'Neall-Hennessey, E, Reshetnikova, L, Szent-Gyorgyi, A.G, Brown, J.H, Cohen, C.
Deposit date:2009-07-05
Release date:2009-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Rigor-like structures from muscle myosins reveal key mechanical elements in the transduction pathways of this allosteric motor.
Structure, 15, 2007
7KVE
DownloadVisualize
BU of 7kve by Molmil
Cryo-EM structure of human Factor V at 3.3 Angstrom resolution
Descriptor: Coagulation factor V
Authors:Ruben, E.A, Di Cera, E.
Deposit date:2020-11-27
Release date:2021-03-10
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structures of human coagulation factors V and Va.
Blood, 137, 2021
8OQW
DownloadVisualize
BU of 8oqw by Molmil
Crystal structure of Tannerella forsythia MurNAc kinase MurK
Descriptor: ATPase, GLYCEROL, SULFATE ION
Authors:Gogler, K, Fink, P, Stasiak, A.C, Stehle, T, Zocher, G.
Deposit date:2023-04-12
Release date:2023-08-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:N-acetylmuramic acid recognition by MurK kinase from the MurNAc auxotrophic oral pathogen Tannerella forsythia.
J.Biol.Chem., 299, 2023
3QRU
DownloadVisualize
BU of 3qru by Molmil
CDK2 in complex with inhibitor NSK-MC1-12
Descriptor: (5S)-N-methyl-5-(2-methylbutan-2-yl)-4,5,6,7-tetrahydro-2H-indazole-3-carboxamide, 1,2-ETHANEDIOL, Cyclin-dependent kinase 2
Authors:Betzi, S, Alam, R, Han, H, Becker, A, Schonbrunn, E.
Deposit date:2011-02-18
Release date:2012-08-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure-guided optimization of novel CDK2 inhibitors discovered by high-throughput screening
To be Published
6RX4
DownloadVisualize
BU of 6rx4 by Molmil
THE STRUCTURE OF BD OXIDASE FROM ESCHERICHIA COLI
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE, Cytochrome bd-I ubiquinol oxidase subunit 1, ...
Authors:Rasmussen, T, Boettcher, B, Thesseling, A, Friedrich, T.
Deposit date:2019-06-07
Release date:2019-11-20
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Homologous bd oxidases share the same architecture but differ in mechanism.
Nat Commun, 10, 2019
6EPI
DownloadVisualize
BU of 6epi by Molmil
Structure of the epsilon_1 / zeta_1 antitoxin / toxin system from Neisseria gonorrhoeae in complex with UNAM-4P.
Descriptor: CITRATE ANION, Epsilon_1 antitoxin, SULFATE ION, ...
Authors:Rocker, A, Meinhart, A.
Deposit date:2017-10-11
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The ng_ zeta 1 toxin of the gonococcal epsilon/zeta toxin/antitoxin system drains precursors for cell wall synthesis.
Nat Commun, 9, 2018
8OOC
DownloadVisualize
BU of 8ooc by Molmil
CryoEM Structure INO80core Hexasome complex Rvb core refinement state1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Chromatin-remodeling ATPase Ino80, ...
Authors:Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S.
Deposit date:2023-04-05
Release date:2023-08-02
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling.
Science, 381, 2023
8BZ3
DownloadVisualize
BU of 8bz3 by Molmil
Structure od the carbohydrate reconition domain of Gal3 in comples with SAF-2-010
Descriptor: Galectin-3, [(2~{S},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{S},4~{R},5~{R},6~{S})-5-acetamido-2-(hydroxymethyl)-6-(4-nitrophenoxy)-4-oxidanyl-oxan-3-yl]oxy-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-4-yl] hydrogen sulfate
Authors:Medrano, F.J, Romero, A.
Deposit date:2022-12-14
Release date:2023-03-01
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Selectively Modified Lactose and N -Acetyllactosamine Analogs at Three Key Positions to Afford Effective Galectin-3 Ligands.
Int J Mol Sci, 24, 2023
8OW7
DownloadVisualize
BU of 8ow7 by Molmil
Crystal structure of Tannerella forsythia sugar kinase K1058 in complex with N-acetylmuramic acid (MurNAc)
Descriptor: N-acetyl-beta-muramic acid, N-acetylglucosamine kinase, SULFATE ION
Authors:Stasiak, A.C, Gogler, K, Fink, P, Stehle, T, Zocher, G.
Deposit date:2023-04-27
Release date:2023-08-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:N-acetylmuramic acid recognition by MurK kinase from the MurNAc auxotrophic oral pathogen Tannerella forsythia.
J.Biol.Chem., 299, 2023
6UU6
DownloadVisualize
BU of 6uu6 by Molmil
E. coli sigma-S transcription initiation complex with a 4-nt RNA and a UTP ("Old" crystal soaked with UTP, ddCTP, and dinucleotide ApG for 30 minutes)
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Zuo, Y, De, S, Steitz, T.A.
Deposit date:2019-10-30
Release date:2020-08-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (4.201 Å)
Cite:Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience, 23, 2020
8OW9
DownloadVisualize
BU of 8ow9 by Molmil
Crystal structure of Tannerella forsythia MurNAc kinase MurK in complex with N-acetylmuramic acid (MurNAc)
Descriptor: N-acetyl-beta-muramic acid, Putative novel MurNAc kinase
Authors:Stasiak, A.C, Gogler, K, Fink, P, Stehle, T, Zocher, G.
Deposit date:2023-04-27
Release date:2023-08-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:N-acetylmuramic acid recognition by MurK kinase from the MurNAc auxotrophic oral pathogen Tannerella forsythia.
J.Biol.Chem., 299, 2023
8CCO
DownloadVisualize
BU of 8cco by Molmil
JAS-stabilized F-ActinII from Plasmodium falciparum
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin-2, Jasplakinolide, ...
Authors:Kursula, I, Lopez, A.J.
Deposit date:2023-01-27
Release date:2023-03-01
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Structure and function of Plasmodium actin II in the parasite mosquito stages.
Plos Pathog., 19, 2023
5NAZ
DownloadVisualize
BU of 5naz by Molmil
Crystal structures of homooligomers of collagen type IV. alpha5NC1
Descriptor: CHLORIDE ION, Collagen alpha-5(IV) chain, TETRAETHYLENE GLYCOL
Authors:Casino, P, Marina, A.
Deposit date:2017-02-28
Release date:2018-09-12
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structures of collagen IV globular domains: insight into associated pathologies, folding and network assembly.
IUCrJ, 5, 2018

227344

數據於2024-11-13公開中

PDB statisticsPDBj update infoContact PDBjnumon