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PDB: 88608 results

2J1R
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BU of 2j1r by Molmil
Structure of a Streptococcus pneumoniae fucose binding module
Descriptor: CALCIUM ION, FUCOLECTIN-RELATED PROTEIN
Authors:Boraston, A.B, Wang, D, Burke, R.D.
Deposit date:2006-08-15
Release date:2006-09-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Blood Group Antigen Recognition by a Streptococcus Pneumoniae Virulence Factor.
J.Biol.Chem., 281, 2006
1TCR
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BU of 1tcr by Molmil
MURINE T-CELL ANTIGEN RECEPTOR 2C CLONE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Garcia, K.C, Degano, M, Stanfield, R.L, Wilson, I.A.
Deposit date:1996-09-12
Release date:1997-03-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:An alphabeta T cell receptor structure at 2.5 A and its orientation in the TCR-MHC complex.
Science, 274, 1996
8IK4
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BU of 8ik4 by Molmil
Structure of DNA binding domain of McrBC endonuclease bound to hemimethylated DNA: L68F mutant
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*AP*GP*AP*(5CM)P*CP*GP*GP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*TP*CP*T)-3'), ...
Authors:Adhav, V.A, Saikrishnan, K.
Deposit date:2023-02-28
Release date:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of target recognition by the DNA binding domain of McrBC
To Be Published
5KW7
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BU of 5kw7 by Molmil
T. danielli thaumatin at 278K, Data set 4
Descriptor: L(+)-TARTARIC ACID, Thaumatin-1
Authors:Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S.
Deposit date:2016-07-15
Release date:2016-08-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Conformational variation of proteins at room temperature is not dominated by radiation damage.
J Synchrotron Radiat, 24, 2017
7T7D
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BU of 7t7d by Molmil
MA-1-206-OXA-23 30s complex
Descriptor: (2R,4S)-2-(1,3-dihydroxypropan-2-yl)-4-{[(3R,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-3,4-dihydro-2H-pyrrole-5-carboxylic acid, Beta-lactamase OXA-23
Authors:Smith, C.A, Stewart, N.K, Vakulenko, S.B.
Deposit date:2021-12-15
Release date:2022-05-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:C6 Hydroxymethyl-Substituted Carbapenem MA-1-206 Inhibits the Major Acinetobacter baumannii Carbapenemase OXA-23 by Impeding Deacylation.
Mbio, 13, 2022
7T7E
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BU of 7t7e by Molmil
MA-1-206-OXA-23 3 minute complex
Descriptor: (2R,4S)-2-(1,3-dihydroxypropan-2-yl)-4-{[(3R,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-3,4-dihydro-2H-pyrrole-5-carboxylic acid, Beta-lactamase OXA-23
Authors:Smith, C.A, Stewart, N.K, Vakulenko, S.B.
Deposit date:2021-12-15
Release date:2022-05-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:C6 Hydroxymethyl-Substituted Carbapenem MA-1-206 Inhibits the Major Acinetobacter baumannii Carbapenemase OXA-23 by Impeding Deacylation.
Mbio, 13, 2022
3EMW
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BU of 3emw by Molmil
Crystal Structure of human splA/ryanodine receptor domain and SOCS box containing 2 (SPSB2) in complex with a 20-residue VASA peptide
Descriptor: 1,2-ETHANEDIOL, Peptide (VASA), SPRY domain-containing SOCS box protein 2
Authors:Filippakopoulos, P, Sharpe, T, Keates, T, Murray, J.W, Savitsky, P, Roos, A.K, Pike, A.C.W, Von Delft, F, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Bountra, C, Knapp, S, Bullock, A, Structural Genomics Consortium (SGC)
Deposit date:2008-09-25
Release date:2008-10-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for Par-4 recognition by the SPRY domain- and SOCS box-containing proteins SPSB1, SPSB2, and SPSB4.
J.Mol.Biol., 401, 2010
1THU
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BU of 1thu by Molmil
THE STRUCTURES OF THREE CRYSTAL FORMS OF THE SWEET PROTEIN THAUMATIN
Descriptor: THAUMATIN ISOFORM B
Authors:Ko, T.-P, Day, J, Greenwood, A, McPherson, A.
Deposit date:1994-06-10
Release date:1994-12-20
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of three crystal forms of the sweet protein thaumatin.
Acta Crystallogr.,Sect.D, 50, 1994
4RI1
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BU of 4ri1 by Molmil
Crystal structure of Helicobacter pylori pseudaminic acid biosynthesis N -acetyltransferase PseH complex with acetyl-coA
Descriptor: ACETATE ION, ACETYL COENZYME *A, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase
Authors:Roujeinikova, A, Ud-Din, A.I.
Deposit date:2014-10-04
Release date:2015-04-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Helicobacter pylori Pseudaminic Acid Biosynthesis N-Acetyltransferase PseH: Implications for Substrate Specificity and Catalysis.
Plos One, 10, 2015
3ET6
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BU of 3et6 by Molmil
The crystal structure of the catalytic domain of a eukaryotic guanylate cyclase
Descriptor: PHOSPHATE ION, Soluble guanylyl cyclase beta
Authors:Winger, J.A, Derbyshire, E.R, Lamers, M.H, Marletta, M.A, Kuriyan, J.
Deposit date:2008-10-07
Release date:2008-10-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The crystal structure of the catalytic domain of a eukaryotic guanylate cyclase.
Bmc Struct.Biol., 8, 2008
8IK8
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BU of 8ik8 by Molmil
Structure of DNA binding domain of McrBC endonuclease bound to DNA: L68F mutant
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'), ...
Authors:Adhav, V.A, Saikrishnan, K.
Deposit date:2023-02-28
Release date:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of target recognition by the DNA binding domain of McrBC
To Be Published
2WEK
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BU of 2wek by Molmil
Crystal structure of the human MGC45594 gene product in complex with diclofenac
Descriptor: 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID, CHLORIDE ION, GLYCEROL, ...
Authors:Shafqat, N, Yue, W.W, Ugochukwu, E, Niesen, F, Smee, C, Arrowsmith, C, Weigelt, J, Edwards, A, Bountra, C, Oppermann, U.
Deposit date:2009-03-31
Release date:2009-12-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of the Human Mgc45594 Gene Product in Complex with Diclofenac
To be Published
7T7K
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BU of 7t7k by Molmil
Structure of SPAC806.04c protein from fission yeast bound to Co2+
Descriptor: CHLORIDE ION, COBALT (II) ION, Damage-control phosphatase SPAC806.04c, ...
Authors:Jacewicz, A, Sanchez, A.M, Shuman, S.
Deposit date:2021-12-15
Release date:2022-06-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Fission yeast Duf89 and Duf8901 are cobalt/nickel-dependent phosphatase-pyrophosphatases that act via a covalent aspartyl-phosphate intermediate.
J.Biol.Chem., 298, 2022
3EVC
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BU of 3evc by Molmil
Crystal structure of GTP complex of yellow fever virus methyltransferase and S-adenosyl-L-homocysteine
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, RNA-directed RNA polymerase NS5, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Thompson, A.A, Geiss, B.J, Peersen, O.B.
Deposit date:2008-10-13
Release date:2009-01-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Analysis of flavivirus NS5 methyltransferase cap binding.
J.Mol.Biol., 385, 2009
1SY7
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BU of 1sy7 by Molmil
Crystal structure of the catalase-1 from Neurospora crassa, native structure at 1.75A resolution.
Descriptor: CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE, Catalase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Diaz, A, Horjales, E, Rudino-Pinera, E, Arreola, R, Hansberg, W.
Deposit date:2004-04-01
Release date:2004-10-12
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Unusual Cys-Tyr covalent bond in a large catalase
J.Mol.Biol., 342, 2004
2WCG
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BU of 2wcg by Molmil
X-ray structure of acid-beta-glucosidase with N-octyl(cyclic guanidine)-nojirimycin in the active site
Descriptor: CHLORIDE ION, GLUCOSYLCERAMIDASE, N-[(3E,5R,6R,7S,8R,8AR)-5,6,7,8-TETRAHYDROXYHEXAHYDROIMIDAZO[1,5-A]PYRIDIN-3(2H)-YLIDENE]OCTAN-1-AMINIUM, ...
Authors:Brumshtein, B, Aguilar, M, Garcia-Moreno, M.I, Mellet, C.O, Garcia-Fernandez, J.M, Silman, I, Shaaltiel, Y, Aviezer, D, Sussman, J.L, Futerman, A.H.
Deposit date:2009-03-12
Release date:2009-11-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:6-Amino-6-Deoxy-5,6-Di-N-(N'-Octyliminomethylidene)Nojirimycin: Synthesis, Biological Evaluation, and Crystal Structure in Complex with Acid Beta-Glucosidase.
Chembiochem, 10, 2009
8A4D
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BU of 8a4d by Molmil
1-deoxy-D-xylulose 5-phosphate synthase from Pseudomonas aeruginosa with a thiamine analog inhibitor
Descriptor: 1-deoxy-D-xylulose-5-phosphate synthase, 2-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]phenyl}ethanol, CALCIUM ION, ...
Authors:Hamid, R, Hirsch, A.
Deposit date:2022-06-10
Release date:2023-07-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:1-deoxy-D-xylulose-5-phosphate synthase from Pseudomonas aeruginosa and Klebsiella pneumoniae reveals conformational changes upon cofactor binding.
J.Biol.Chem., 299, 2023
1SZG
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BU of 1szg by Molmil
A198G:L230A flavocytochrome b2 with sulfite bound
Descriptor: Cytochrome b2, mitochondrial, N-SULFO-FLAVIN MONONUCLEOTIDE
Authors:Mowat, C.G, Wehenkel, A, Green, A.J, Walkinshaw, M.D, Reid, G.A, Chapman, S.K.
Deposit date:2004-04-05
Release date:2004-07-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Altered Substrate Specificity in Flavocytochrome b(2): Structural Insights into the Mechanism of l-Lactate Dehydrogenation
Biochemistry, 43, 2004
6PUQ
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BU of 6puq by Molmil
1.56 A crystal structure of flavodoxin-like domain of Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, ...
Authors:Sjekloca, L, Ferre-D'Amare, A.R.
Deposit date:2019-07-18
Release date:2020-07-22
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Biochemical and structural characterization of the flavodoxin-like domain of the Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN.
MicroPubl Biol, 2022, 2022
4RJD
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BU of 4rjd by Molmil
TFP bound in alternate orientations to calcium-saturated Calmodulin C-Domains
Descriptor: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PROPYL]-2-TRIFLUOROMETHYL-10H-PHENOTHIAZINE, CALCIUM ION, CHLORIDE ION, ...
Authors:Feldkamp, M.D, Gakhar, L, Pandey, N, Shea, M.A.
Deposit date:2014-10-08
Release date:2015-08-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Opposing orientations of the anti-psychotic drug trifluoperazine selected by alternate conformations of M144 in calmodulin.
Proteins, 83, 2015
3EQV
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BU of 3eqv by Molmil
Crystal structure of penicillin-binding protein 2 from Neisseria gonorrhoeae containing four mutations associated with penicillin resistance
Descriptor: GLYCEROL, Penicillin-binding protein 2, SULFATE ION
Authors:Powell, A.J, Deacon, A.M, Nicholas, R.A, Davies, C.
Deposit date:2008-10-01
Release date:2008-10-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of Penicillin-binding Protein 2 from Penicillin-susceptible and -resistant Strains of Neisseria gonorrhoeae Reveal an Unexpectedly Subtle Mechanism for Antibiotic Resistance.
J.Biol.Chem., 284, 2009
3EVA
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BU of 3eva by Molmil
Crystal structure of yellow fever virus methyltransferase complexed with S-adenosyl-L-homocysteine
Descriptor: RNA-directed RNA polymerase NS5, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Thompson, A.A, Geiss, B.J, Peersen, O.B.
Deposit date:2008-10-13
Release date:2009-01-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Analysis of flavivirus NS5 methyltransferase cap binding.
J.Mol.Biol., 385, 2009
6WG1
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BU of 6wg1 by Molmil
Crystal structure of Fab399 in complex with NPNA6 peptide from circumsporozoite protein
Descriptor: Fab399 heavy chain, Fab399 light chain, NPNA6 peptide
Authors:Pholcharee, T, Oyen, D, Wilson, I.A.
Deposit date:2020-04-04
Release date:2020-07-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.086 Å)
Cite:Structural and biophysical correlation of anti-NANP antibodies with in vivo protection against P. falciparum.
Nat Commun, 12, 2021
6PXY
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BU of 6pxy by Molmil
Crystal structure of ligand-binding domain of Pseudomonas fluorescens chemoreceptor CtaA in complex with L-alanine
Descriptor: ALANINE, Putative methyl-accepting chemotaxis protein
Authors:Ud-Din, I.A, Khan, M.F, Roujeinikova, A.
Deposit date:2019-07-28
Release date:2020-03-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Broad Specificity of Amino Acid Chemoreceptor CtaA ofPseudomonas fluorescensIs Afforded by Plasticity of Its Amphipathic Ligand-Binding Pocket.
Mol.Plant Microbe Interact., 33, 2020
8A6O
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BU of 8a6o by Molmil
Room temperature rsEGFP2 with a chlorinated chromophore 600 fs after Photoexcitation
Descriptor: Green fluorescent protein
Authors:Fadini, A, van Thor, J.
Deposit date:2022-06-18
Release date:2023-07-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism.
J.Am.Chem.Soc., 145, 2023

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數據於2024-07-24公開中

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