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PDB: 88608 results

4U3Q
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Crystal Structure of Recombinant TP0435 from Treponema pallidum
Descriptor: 17 kDa lipoprotein
Authors:Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2014-07-22
Release date:2014-10-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Insights into the potential function and membrane organization of the TP0435 (Tp17) lipoprotein from Treponema pallidum derived from structural and biophysical analyses.
Protein Sci., 24, 2015
4UF7
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Ghanaian henipavirus (Gh-M74a) attachment glycoprotein in complex with human ephrinB2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, CHLORIDE ION, ...
Authors:Lee, B, Pernet, O, Ahmed, A.A, Zeltina, A, Beaty, S.M, Bowden, T.A.
Deposit date:2015-03-13
Release date:2015-04-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular Recognition of Human Ephrinb2 Cell Surface Receptor by an Emergent African Henipavirus.
Proc.Natl.Acad.Sci.USA, 112, 2015
4U2W
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Atomic resolution crystal structure of HV-BBI protease inhibitor from amphibian skin in complex with bovine trypsin
Descriptor: 1,2-ETHANEDIOL, Bowman-Birk trypsin inhibitor, CALCIUM ION, ...
Authors:Grudnik, P, Golik, P, Malicki, S, Debowski, D, Legowska, A, Rolka, K, Dubin, G.
Deposit date:2014-07-18
Release date:2015-01-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution crystal structure of HV-BBI protease inhibitor from amphibian skin in complex with bovine trypsin.
Proteins, 83, 2015
4U35
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Crystal Structures of RNA Duplexes Containing 2-thio-Uridine
Descriptor: RNA (5'-R(*GP*GP*UP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*(SUR)P*CP*C-3')
Authors:Sheng, J, Larsen, A, Heuberger, B, Blain, J.C, Szostak, J.W.
Deposit date:2014-07-18
Release date:2014-08-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure Studies of RNA Duplexes Containing s(2)U:A and s(2)U:U Base Pairs.
J.Am.Chem.Soc., 136, 2014
4U37
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Native 7mer-RNA duplex
Descriptor: RNA (5'-R(*GP*GP*AP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3')
Authors:Sheng, J, Larsen, A, Heuberger, B, Blain, J.C, Szostak, J.W.
Deposit date:2014-07-18
Release date:2014-08-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure Studies of RNA Duplexes Containing s(2)U:A and s(2)U:U Base Pairs.
J.Am.Chem.Soc., 136, 2014
4U39
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Crystal Structure of FtsZ:MciZ Complex from Bacillus subtilis
Descriptor: Cell division factor, Cell division protein FtsZ, PHOSPHATE ION
Authors:Bisson-Filho, A.W, Discola, K.F, Castellen, P, Blasios, V, Martins, A, Sforca, M.L, Garcia, W, Zeri, A.C, Erickson, H.P, Dessen, A, Gueiros-Filho, F.J.
Deposit date:2014-07-19
Release date:2015-03-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.194 Å)
Cite:Crystal Structure of FtsZ:MciZ Complex from Bacillus subtilis
To be Published
7OQT
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BU of 7oqt by Molmil
G-quadruplex structure of the C. elegans telomeric repeat: A two tetrads basket type conformation stabilised by a Hoogsteen C-T base-pair
Descriptor: DNA (5'-D(*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*G)-3'), POTASSIUM ION
Authors:Marquevielle, J, De Rache, A, Amrane, S.
Deposit date:2021-06-04
Release date:2022-06-22
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:G-quadruplex structure of the C. elegans telomeric repeat: a two tetrads basket type conformation stabilized by a non-canonical C-T base-pair.
Nucleic Acids Res., 50, 2022
4U1V
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BU of 4u1v by Molmil
Crystal structure of the E. coli ribosome bound to linopristin.
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D.
Deposit date:2014-07-16
Release date:2014-07-30
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:Synergy of streptogramin antibiotics occurs independently of their effects on translation.
Antimicrob.Agents Chemother., 58, 2014
4U9E
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BU of 4u9e by Molmil
Crystal structure of the Zn-directed tetramer of the engineered cyt cb562 variant, A104/57G AB3
Descriptor: CALCIUM ION, HEME C, Soluble cytochrome b562, ...
Authors:Tezcan, F.A, Song, W.J.
Deposit date:2014-08-06
Release date:2015-01-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A designed supramolecular protein assembly with in vivo enzymatic activity
Science, 346, 2014
4U9L
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Structure of a membrane protein
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, MAGNESIUM ION, Magnesium transporter MgtE
Authors:Takeda, H, Hattori, M, Nishizawa, T, Yamashita, K, Shah, S.T.A, Caffrey, M, Maturana, A.D, Ishitani, R, Nureki, O.
Deposit date:2014-08-06
Release date:2014-12-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for ion selectivity revealed by high-resolution crystal structure of Mg(2+) channel MgtE
Nat Commun, 5, 2014
4UBA
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BU of 4uba by Molmil
Low-salt structure of protein kinase CK2 catalytic subunit with 4'-carboxy-6,8-bromo-flavonol (FLC26)
Descriptor: 4-(6,8-dibromo-3-hydroxy-4-oxo-4H-chromen-2-yl)benzoic acid, Casein kinase II subunit alpha
Authors:Niefind, K, Bischoff, N, Guerra, B, Golub, A, Issinger, O.-G.
Deposit date:2014-08-12
Release date:2015-07-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.995 Å)
Cite:A Note of Caution on the Role of Halogen Bonds for Protein Kinase/Inhibitor Recognition Suggested by High- And Low-Salt CK2 alpha Complex Structures.
Acs Chem.Biol., 10, 2015
4UET
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BU of 4uet by Molmil
Diversity in the structures and ligand binding sites among the fatty acid and retinol binding proteins of nematodes revealed by Na-FAR-1 from Necator americanus
Descriptor: NEMATODE FATTY ACID RETINOID BINDING PROTEIN
Authors:Rey-Burusco, M.F, Ibanez Shimabukuro, M, Griffiths, K, Cooper, A, Kennedy, M.W, Corsico, B, Smith, B.O, Griffiths, K.
Deposit date:2014-12-18
Release date:2015-09-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Diversity in the Structures and Ligand Binding Sites of Nematode Fatty Acid and Retinol Binding Proteins Revealed by Na-Far-1 from Necator Americanus.
Biochem.J., 471, 2015
4U4T
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BU of 4u4t by Molmil
Structure of a nitrate/nitrite antiporter NarK in nitrate-bound inward-open state
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, NITRATE ION, Nitrate/nitrite transporter NarK, ...
Authors:Fukuda, M, Takeda, H, Kato, H.E, Doki, S, Ito, K, Maturana, A.D, Ishitani, R, Nureki, O.
Deposit date:2014-07-24
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK
Nat Commun, 6, 2015
4U89
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4'-phosphopantetheinyl transferase PptT from Mycobacterium tuberculosis
Descriptor: COENZYME A, IMIDAZOLE, PHOSPHATE ION, ...
Authors:Faille, A, Mourey, L, Pedelacq, J.D.
Deposit date:2014-08-01
Release date:2015-08-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:X-ray structure of the 4'-phosphopantetheinyl transferase PptT from Mycobacterium tuberculosis
to be published
7PIU
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BU of 7piu by Molmil
Cryo-EM structure of the agonist setmelanotide bound to the active melanocortin-4 receptor (MC4R) in complex with the heterotrimeric Gs protein at 2.6 A resolution.
Descriptor: CALCIUM ION, Camelid antibody fragment - nanobody 35, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Heyder, N.A, Schmidt, A, Kleinau, G, Hilal, T, Scheerer, P.
Deposit date:2021-08-23
Release date:2021-11-17
Method:ELECTRON MICROSCOPY (2.58 Å)
Cite:Structures of active melanocortin-4 receptor-Gs-protein complexes with NDP-alpha-MSH and setmelanotide.
Cell Res., 31, 2021
4U8J
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BU of 4u8j by Molmil
Structure of Aspergillus fumigatus UDP-Galactopyranose mutase mutant Y104A
Descriptor: 1,2-ETHANEDIOL, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, SULFATE ION, ...
Authors:Qureshi, I.A, Chaudhary, R, Tanner, J.J.
Deposit date:2014-08-03
Release date:2014-12-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Contributions of Unique Active Site Residues of Eukaryotic UDP-Galactopyranose Mutases to Substrate Recognition and Active Site Dynamics.
Biochemistry, 53, 2014
4U9B
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BU of 4u9b by Molmil
Crystal structure of an H-NOX protein from S. oneidensis in the Fe(II)NO ligation state
Descriptor: GLYCEROL, NITRIC OXIDE, NO-binding heme-dependent sensor protein, ...
Authors:Herzik Jr, M.A, Jonnalagadda, R, Kuriyan, J, Marletta, M.A.
Deposit date:2014-08-05
Release date:2014-10-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural insights into the role of iron-histidine bond cleavage in nitric oxide-induced activation of H-NOX gas sensor proteins.
Proc.Natl.Acad.Sci.USA, 111, 2014
4UHJ
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Crystal structure of the receiver domain of CpxR from E. coli (orthorhombic form)
Descriptor: MAGNESIUM ION, TRANSCRIPTIONAL REGULATORY PROTEIN CPXR
Authors:Mechaly, A.E, Alzari, P.M.A.
Deposit date:2015-03-24
Release date:2016-04-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Coupling between Autokinase and Phosphotransferase Reactions in a Bacterial Histidine Kinase.
Structure, 25, 2017
7PIV
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BU of 7piv by Molmil
Active Melanocortin-4 receptor (MC4R)- Gs protein complex bound to agonist NDP-alpha-MSH at 2.86 A resolution.
Descriptor: CALCIUM ION, Camelid antibody VHH fragment - nanobody 35, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Heyder, N.A, Schmidt, A, Kleinau, G, Hilal, T, Scheerer, P.
Deposit date:2021-08-23
Release date:2021-11-17
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structures of active melanocortin-4 receptor-Gs-protein complexes with NDP-alpha-MSH and setmelanotide.
Cell Res., 31, 2021
4UAO
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BU of 4uao by Molmil
Crystal structure of Apical Membrane Antigen 1 from Plasmodium Knowlesi in complex with an invasion inhibitory antibody
Descriptor: Apical merozoite antigen 1, immunoglobulin R31C2 VH and CH1 regions, immunoglobulin R31C2 light chain
Authors:Vulliez-Le Normand, B, Saul, F.A, Bentley, G.A.
Deposit date:2014-08-11
Release date:2015-04-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structure of Plasmodium knowlesi Apical Membrane Antigen 1 and Its Complex with an Invasion-Inhibitory Monoclonal Antibody.
Plos One, 10, 2015
4UAV
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BU of 4uav by Molmil
Crystal structure of CbbY (AT3G48420) from Arabidobsis thaliana
Descriptor: Haloacid dehalogenase-like hydrolase domain-containing protein At3g48420, MAGNESIUM ION
Authors:Bracher, A, Sharma, A, Starling-Windhof, A, Hartl, F.U, Hayer-Hartl, M.
Deposit date:2014-08-11
Release date:2014-12-31
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Degradation of potent Rubisco inhibitor by selective sugar phosphatase.
Nat.Plants, 1, 2015
7PGN
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HHP-C in complex with glycosaminoglycan mimic SOS
Descriptor: 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose, CALCIUM ION, GLYCEROL, ...
Authors:Griffiths, S.C, Schwab, R.A, El Omari, K, Bishop, B, Iverson, E.J, Malinuskas, T, Dubey, R, Qian, M, Covey, D.F, Gilbert, R.J.C, Rohatgi, R, Siebold, C.
Deposit date:2021-08-14
Release date:2021-12-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Hedgehog-Interacting Protein is a multimodal antagonist of Hedgehog signalling.
Nat Commun, 12, 2021
7PTU
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Structure of pentameric S-layer protein from Halofaerax volcanii
Descriptor: Cell surface glycoprotein, beta-D-glucopyranose
Authors:von Kuegelgen, A, Bharat, T.A.M.
Deposit date:2021-09-27
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Complete atomic structure of a native archaeal cell surface.
Cell Rep, 37, 2021
7PTR
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BU of 7ptr by Molmil
Structure of hexameric S-layer protein from Haloferax volcanii archaea
Descriptor: CALCIUM ION, Cell surface glycoprotein, beta-D-glucopyranose
Authors:von Kuegelgen, A, Bharat, T.A.M.
Deposit date:2021-09-27
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Complete atomic structure of a native archaeal cell surface.
Cell Rep, 37, 2021
4UAU
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Crystal structure of CbbY (mutant D10N) from Rhodobacter sphaeroides in complex with Xylulose-(1,5)bisphosphate, crystal form II
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, Protein CbbY, ...
Authors:Bracher, A, Sharma, A, Starling-Windhof, A, Hartl, F.U, Hayer-Hartl, M.
Deposit date:2014-08-11
Release date:2014-12-31
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Degradation of potent Rubisco inhibitor by selective sugar phosphatase.
Nat.Plants, 1, 2015

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