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PDB: 88608 results

7AR0
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Co-Crystal Structure of Variant Surface Glycoprotein VSG2 in complex with Nanobody VSG2(NB19)
Descriptor: Nanobody VSG2(NB19), Variant surface glycoprotein MITAT 1.2, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Stebbins, C.E, Hempelmann, A.
Deposit date:2020-10-23
Release date:2021-11-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.139 Å)
Cite:Nanobody-mediated macromolecular crowding induces membrane fission and remodeling in the African trypanosome.
Cell Rep, 37, 2021
3EGJ
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BU of 3egj by Molmil
N-acetylglucosamine-6-phosphate deacetylase from Vibrio cholerae.
Descriptor: N-acetylglucosamine-6-phosphate deacetylase, NICKEL (II) ION, SULFATE ION
Authors:Osipiuk, J, Maltseva, N, Stam, J, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2008-09-10
Release date:2008-09-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:X-ray crystal structure of N-acetylglucosamine-6-phosphate deacetylase from Vibrio cholerae.
To be Published
4RG6
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BU of 4rg6 by Molmil
Crystal structure of APC3-APC16 complex
Descriptor: Anaphase-promoting complex subunit 16, Cell division cycle protein 27 homolog
Authors:Yamaguchi, M, Yu, S, Miller, D.J, Schulman, B.A.
Deposit date:2014-09-29
Release date:2014-12-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of an APC3-APC16 Complex: Insights into Assembly of the Anaphase-Promoting Complex/Cyclosome.
J.Mol.Biol., 427, 2015
4QSF
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BU of 4qsf by Molmil
CRYSTAL STRUCTURE of AMIDOHYDROLASE PMI1525 (TARGET EFI-500319) FROM PROTEUS MIRABILIS HI4320, A COMPLEX WITH BUTYRIC ACID AND MANGANESE
Descriptor: Amidohydrolase Pmi1525, MANGANESE (II) ION, SULFATE ION, ...
Authors:Patskovsky, Y, Toro, R, Xiang, D.F, Raushel, F.M, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-07-03
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure of Amidohydrolase Pmi1525 from Proteus Mirabilis Hi4320
To be Published
8A7Z
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BU of 8a7z by Molmil
NMR structure of holo-acp
Descriptor: 4'-PHOSPHOPANTETHEINE, Hybrid polyketide synthase-non ribosomal peptide synthetase
Authors:Collin, S, Weissman, K.J, Chagot, B, Gruez, A.
Deposit date:2022-06-21
Release date:2023-03-22
Last modified:2023-03-29
Method:SOLUTION NMR
Cite:Decrypting the programming of beta-methylation in virginiamycin M biosynthesis.
Nat Commun, 14, 2023
1TEV
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BU of 1tev by Molmil
Crystal structure of the human UMP/CMP kinase in open conformation
Descriptor: SULFATE ION, UMP-CMP kinase
Authors:Segura-Pena, D, Sekulic, N, Ort, S, Konrad, M, Lavie, A.
Deposit date:2004-05-25
Release date:2004-06-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Substrate-induced Conformational Changes in Human UMP/CMP Kinase.
J.Biol.Chem., 279, 2004
3EP0
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BU of 3ep0 by Molmil
Methyltransferase domain of human PR domain-containing protein 12
Descriptor: PR domain zinc finger protein 12
Authors:Amaya, M.F, Zeng, H, Loppnau, P, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Botchkarev, A, Min, J, Plotnikov, A.N, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2008-09-29
Release date:2008-11-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of methyltransferase domain of human PR Domain-containing protein 12.
To be Published
5KC5
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BU of 5kc5 by Molmil
Crystal structure of the Cbln1 C1q domain trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cerebellin-1
Authors:Elegheert, J, Clay, J.E, Siebold, C, Aricescu, A.R.
Deposit date:2016-06-05
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Structural basis for integration of GluD receptors within synaptic organizer complexes.
Science, 353, 2016
4R7U
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BU of 4r7u by Molmil
Structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Vibrio cholerae in complex with substrate UDP-N-acetylglucosamine and the drug fosfomycin
Descriptor: SODIUM ION, TETRAETHYLENE GLYCOL, UDP-N-acetylglucosamine 1-carboxyvinyltransferase, ...
Authors:Nocek, B, Maltseva, N, Anderson, W, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-08-28
Release date:2014-09-24
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Vibrio cholerae in complex with substrate UDP-N-acetylglucosamine and the drug fosfomycin
To be Published
1SZ1
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BU of 1sz1 by Molmil
Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexes
Descriptor: T-RNA (76-MER), tRNA nucleotidyltransferase
Authors:Xiong, Y, Steitz, T.A.
Deposit date:2004-04-02
Release date:2004-08-10
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (6.21 Å)
Cite:Mechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template.
Nature, 430, 2004
4RG9
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BU of 4rg9 by Molmil
Crystal structure of APC3-APC16 complex (Selenomethionine Derivative)
Descriptor: Anaphase-promoting complex subunit 16, Cell division cycle protein 27 homolog
Authors:Yamaguchi, M, Yu, S, Miller, D.J, Schulman, B.A.
Deposit date:2014-09-29
Release date:2014-12-24
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structure of an APC3-APC16 Complex: Insights into Assembly of the Anaphase-Promoting Complex/Cyclosome.
J.Mol.Biol., 427, 2015
7TEY
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BU of 7tey by Molmil
Cryo-EM structure of SARS-CoV-2 Delta (B.1.617.2) spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Zhu, X, Saville, J.W, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Zhou, S, Tuttle, K.S, Subramaniam, S.
Deposit date:2022-01-06
Release date:2022-03-16
Method:ELECTRON MICROSCOPY (2.25 Å)
Cite:Structural and biochemical rationale for enhanced spike protein fitness in delta and kappa SARS-CoV-2 variants.
Nat Commun, 13, 2022
2WBR
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BU of 2wbr by Molmil
The RRM domain in GW182 proteins contributes to miRNA-mediated gene silencing
Descriptor: GW182
Authors:Eulalio, A, Tritschler, F, Buettner, R, Weichenrieder, O, Izaurralde, E, Truffault, V.
Deposit date:2009-03-03
Release date:2009-03-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Rrm Domain in Gw182 Proteins Contributes to Mirna-Mediated Gene Silencing.
Nucleic Acids Res., 37, 2009
1T3J
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BU of 1t3j by Molmil
Mitofusin domain HR2 V686M/I708M mutant
Descriptor: mitofusin 1
Authors:Koshiba, T, Detmer, S.A, Kaiser, J.T, Chen, H, McCaffery, J.M, Chan, D.C.
Deposit date:2004-04-26
Release date:2004-08-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of mitochondrial tethering by mitofusin complexes
Science, 305, 2004
4R9M
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BU of 4r9m by Molmil
Crystal structure of spermidine N-acetyltransferase from Escherichia coli
Descriptor: MAGNESIUM ION, Spermidine N(1)-acetyltransferase
Authors:Filippova, E.V, Minasov, G, Kiryukhina, O, Shuvalova, L, Grimshaw, S, Wolfe, A.J, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-09-05
Release date:2014-11-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Analysis of crystalline and solution states of ligand-free spermidine N-acetyltransferase (SpeG) from Escherichia coli.
Acta Crystallogr D Struct Biol, 75, 2019
7T3P
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BU of 7t3p by Molmil
IP3 and ATP bound type 3 IP3 receptor in the pre-active A state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, Inositol 1,4,5-trisphosphate receptor type 3, ...
Authors:Schmitz, E.A, Takahashi, H, Karakas, E.
Deposit date:2021-12-08
Release date:2022-03-23
Last modified:2022-05-04
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis for activation and gating of IP 3 receptors.
Nat Commun, 13, 2022
7TF2
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BU of 7tf2 by Molmil
Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) Q484I spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Zhu, X, Saville, J.W, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Zhou, S, Tuttle, K.S, Subramaniam, S.
Deposit date:2022-01-06
Release date:2022-03-30
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Structural and biochemical rationale for enhanced spike protein fitness in delta and kappa SARS-CoV-2 variants.
Nat Commun, 13, 2022
7TF0
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Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) spike protein in complex with human ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Zhu, X, Saville, J.W, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Zhou, S, Tuttle, K.S, Subramaniam, S.
Deposit date:2022-01-06
Release date:2022-03-30
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:Structural and biochemical rationale for enhanced spike protein fitness in delta and kappa SARS-CoV-2 variants.
Nat Commun, 13, 2022
7TE1
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BU of 7te1 by Molmil
SARS-CoV-2 Receptor Binding Domain in Complex with Ab17
Descriptor: Ab17 heavy chain, Ab17 light chain, Spike protein S1
Authors:Hauser, B.M, Schmidt, A.G.
Deposit date:2022-01-03
Release date:2022-03-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Rationally designed immunogens enable immune focusing following SARS-CoV-2 spike imprinting.
Cell Rep, 38, 2022
7TEX
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BU of 7tex by Molmil
Cryo-EM structure of SARS-CoV-2 Delta (B.1.617.2) spike protein in complex with human ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Zhu, X, Saville, J.W, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Zhou, S, Tuttle, K.S, Subramaniam, S.
Deposit date:2022-01-06
Release date:2022-03-30
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Structural and biochemical rationale for enhanced spike protein fitness in delta and kappa SARS-CoV-2 variants.
Nat Commun, 13, 2022
5UM4
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BU of 5um4 by Molmil
Crystal structure of the F255A mutant Kir3.1 cytoplasmic pore domain
Descriptor: G protein-activated inward rectifier potassium channel 1
Authors:Meinke, G, Bohm, A, Noujaim, S.
Deposit date:2017-01-26
Release date:2018-01-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the F255A mutant Kir3.1 cytoplasmic pore domain
To Be Published
7TF3
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BU of 7tf3 by Molmil
Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) Q484A spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Zhu, X, Saville, J.W, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Zhou, S, Tuttle, K.S, Subramaniam, S.
Deposit date:2022-01-06
Release date:2022-03-30
Method:ELECTRON MICROSCOPY (2.25 Å)
Cite:Structural and biochemical rationale for enhanced spike protein fitness in delta and kappa SARS-CoV-2 variants.
Nat Commun, 13, 2022
4RDM
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BU of 4rdm by Molmil
Crystal structure of R.NgoAVII restriction endonuclease B3 domain with cognate DNA
Descriptor: DNA (5'-D(*CP*CP*TP*AP*AP*GP*CP*GP*GP*CP*AP*AP*TP*CP*C)-3)', DNA (5'-D(*GP*GP*GP*AP*TP*TP*GP*CP*CP*GP*CP*TP*TP*AP*G)-3)', Restriction endonuclease R.NgoVII, ...
Authors:Tamulaitiene, G, Silanskas, A, Grazulis, S, Zaremba, M, Siksnys, V.
Deposit date:2014-09-19
Release date:2014-12-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the R-protein of the multisubunit ATP-dependent restriction endonuclease NgoAVII.
Nucleic Acids Res., 42, 2014
7TF5
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BU of 7tf5 by Molmil
Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Zhu, X, Saville, J.W, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Zhou, S, Tuttle, K.S, Subramaniam, S.
Deposit date:2022-01-06
Release date:2022-03-30
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Structural and biochemical rationale for enhanced spike protein fitness in delta and kappa SARS-CoV-2 variants.
Nat Commun, 13, 2022
1SSL
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BU of 1ssl by Molmil
Solution structure of the PSI domain from the Met receptor
Descriptor: Hepatocyte growth factor receptor
Authors:Kozlov, G, Perreault, A, Schrag, J.D, Cygler, M, Gehring, K, Ekiel, I.
Deposit date:2004-03-24
Release date:2004-10-12
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Insights into function of PSI domains from structure of the Met receptor PSI domain.
Biochem.Biophys.Res.Commun., 321, 2004

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