Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89346 件

4UO3
DownloadVisualize
BU of 4uo3 by Molmil
Structure of the A_Equine_Richmond_07 H3 haemagglutinin mutant Ser30Thr
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Vachieri, S.G, Collins, P.J, Haire, L.F, Ogrodowicz, R.W, Martin, S.R, Walker, P.A, Xiong, X, Gamblin, S.J, Skehel, J.J.
登録日2014-05-31
公開日2014-07-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.87 Å)
主引用文献Recent Evolution of Equine Influenza and the Origin of Canine Influenza.
Proc.Natl.Acad.Sci.USA, 111, 2014
6R2V
DownloadVisualize
BU of 6r2v by Molmil
Arabidopsis NF-Y/CCAAT-box complex
分子名称: FT (-5kb) CCAAT-box 3', FT (-5kb) CCAAT-box 5', NF-YB2, ...
著者Chaves-Sanjuan, A, Gnesutta, N, Chiara, M, Bernardini, A, Fornara, F, Horner, D, Nardini, M, Mantovani, R.
登録日2019-03-19
公開日2020-09-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.503 Å)
主引用文献Structural determinants for NF-Y subunit organization and NF-Y/DNA association in plants.
Plant J., 105, 2021
6R2U
DownloadVisualize
BU of 6r2u by Molmil
Zinc-alpha2-Glycoprotein with a Fluorescent Dansyl C 11 Fatty Acid
分子名称: 11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)undecanoic acid, AZIDE ION, SULFATE ION, ...
著者Lau, A.M, Gor, J, Perkins, S.J, Coker, A.R, McDermott, L.C.
登録日2019-03-18
公開日2019-09-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Crystal structure of zinc-alpha 2-glycoprotein in complex with a fatty acid reveals multiple different modes of protein-lipid binding.
Biochem.J., 476, 2019
6R2Q
DownloadVisualize
BU of 6r2q by Molmil
Structure of the Mtr complex
分子名称: CALCIUM ION, Cystathionine beta-synthase, Decaheme c-type cytochrome, ...
著者Clarke, T.A, Edwards, M.J.
登録日2019-03-18
公開日2020-04-22
最終更新日2020-05-13
実験手法X-RAY DIFFRACTION (2.697 Å)
主引用文献The Crystal Structure of a Biological Insulated Transmembrane Molecular Wire.
Cell, 181, 2020
6ZSL
DownloadVisualize
BU of 6zsl by Molmil
Crystal structure of the SARS-CoV-2 helicase at 1.94 Angstrom resolution
分子名称: PHOSPHATE ION, SARS-CoV-2 helicase NSP13, ZINC ION
著者Newman, J.A, Yosaatmadja, Y, Douangamath, A, Arrowsmith, C.H, von Delft, F, Edwards, A, Bountra, C, Gileadi, O.
登録日2020-07-15
公開日2020-07-29
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structure, mechanism and crystallographic fragment screening of the SARS-CoV-2 NSP13 helicase.
Nat Commun, 12, 2021
5NXT
DownloadVisualize
BU of 5nxt by Molmil
Wobble base paired RNA double helix
分子名称: RNA (5'-R(*UP*GP*UP*UP*CP*UP*CP*UP*AP*CP*GP*AP*AP*GP*AP*AP*CP*A)-3')
著者Garg, A, Heinemann, U.
登録日2017-05-10
公開日2017-11-29
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.379 Å)
主引用文献A novel form of RNA double helix based on G·U and C·A+ wobble base pairing.
RNA, 24, 2018
6ZQQ
DownloadVisualize
BU of 6zqq by Molmil
Structure of the Pmt3-MIR domain with bound ligands
分子名称: GLYCEROL, PMT3 isoform 1
著者Wild, K, Chiapparino, A, Hackmann, Y, Mortensen, S, Sinning, I.
登録日2020-07-10
公開日2020-12-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Functional implications of MIR domains in protein O -mannosylation.
Elife, 9, 2020
8CZG
DownloadVisualize
BU of 8czg by Molmil
Human BAK in complex with the dF3 peptide
分子名称: Bcl-2 homologous antagonist/killer, dF3 peptide
著者Aguilar, F, Keating, A.E.
登録日2022-05-24
公開日2023-01-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Peptides from human BNIP5 and PXT1 and non-native binders of pro-apoptotic BAK can directly activate or inhibit BAK-mediated membrane permeabilization.
Structure, 31, 2023
6ZRD
DownloadVisualize
BU of 6zrd by Molmil
STRUCTURE OF THE HUMAN RBAP48 in complex with a macrocyclic peptide cyclized via a xylene linker attached to two cysteines
分子名称: 1,3,5-trimethylbenzene, Histone-binding protein RBBP4, macrocyclic peptide based on residues 659-672 of the metastasis-associated protein MTA1
著者Vetter, I.R, Porfetye, A.T.
登録日2020-07-13
公開日2020-12-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure Based Design of Bicyclic Peptide Inhibitors of RbAp48.
Angew.Chem.Int.Ed.Engl., 60, 2021
4UO6
DownloadVisualize
BU of 4uo6 by Molmil
Structure of the A_Canine_Colorado_17864_06 H3 haemagglutinin in complex with Sialyl Lewis X
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, H3 HAEMAGGLUTININ HA1 CHAIN, ...
著者Vachieri, S.G, Collins, P.J, Haire, L.F, Ogrodowicz, R.W, Martin, S.R, Walker, P.A, Xiong, X, Gamblin, S.J, Skehel, J.J.
登録日2014-05-31
公開日2014-07-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Recent Evolution of Equine Influenza and the Origin of Canine Influenza.
Proc.Natl.Acad.Sci.USA, 111, 2014
5GAG
DownloadVisualize
BU of 5gag by Molmil
RNC in complex with SRP-SR in the closed state
分子名称: 1A9L SS, 23S rRNA, 50S ribosomal protein L10, ...
著者Jomaa, A, Boehringer, D, Leibundgut, M, Ban, N.
登録日2015-11-26
公開日2016-01-27
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
Nat Commun, 7, 2016
5O03
DownloadVisualize
BU of 5o03 by Molmil
GII.10 Vietnam 026 protruding domain in complex with Nanobody Nano-32
分子名称: 1,2-ETHANEDIOL, Capsid protein, IMIDAZOLE, ...
著者Koromyslova, A.D, Hansman, G.H.
登録日2017-05-16
公開日2017-10-04
最終更新日2019-04-10
実験手法X-RAY DIFFRACTION (2.194 Å)
主引用文献Nanobodies targeting norovirus capsid reveal functional epitopes and potential mechanisms of neutralization.
PLoS Pathog., 13, 2017
6ZSC
DownloadVisualize
BU of 6zsc by Molmil
Human mitochondrial ribosome in complex with E-site tRNA
分子名称: 12S mitochondrial rRNA, 16S mitochondrial rRNA, 28S ribosomal protein S10, ...
著者Aibara, S, Singh, V, Modelska, A, Amunts, A.
登録日2020-07-15
公開日2020-09-16
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural basis of mitochondrial translation.
Elife, 9, 2020
4UFX
DownloadVisualize
BU of 4ufx by Molmil
Plasmodium vivax N-myristoyltransferase in complex with a pyridyl inhibitor (compound 19)
分子名称: 2-oxopentadecyl-CoA, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
著者Yu, Z, Brannigan, J.A, Rangachari, K, Heal, W.P, Wilkinson, A.J, Holder, A.A, Tate, E.W, Leatherbarrow, R.J.
登録日2015-03-19
公開日2016-02-03
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Discovery of Pyridyl-Based Inhibitors of Plasmodium Falciparum N-Myristoyltransferase
Medchemcomm, 6, 2015
5O3A
DownloadVisualize
BU of 5o3a by Molmil
Human Brd2(BD2) mutant in complex with ET
分子名称: Bromodomain-containing protein 2, methyl (2R)-2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]butanoate
著者Chan, K.-H, Runcie, A.C, Ciulli, A.
登録日2017-05-23
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition.
Chem Sci, 9, 2018
5O3E
DownloadVisualize
BU of 5o3e by Molmil
Human Brd2(BD2) mutant in complex with Me-Am1
分子名称: (2~{R})-2-[(4~{S})-6-(4-chlorophenyl)-8-methoxy-1-methyl-4~{H}-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-~{N}-ethyl-propanamide, (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol, Bromodomain-containing protein 2, ...
著者Chan, K.-H, Runcie, A.C, Ciulli, A.
登録日2017-05-23
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition.
Chem Sci, 9, 2018
8AF8
DownloadVisualize
BU of 8af8 by Molmil
Room temperature SSX crystal structure of CTX-M-14 (5K dataset)
分子名称: Beta-lactamase, SULFATE ION
著者Oberthuer, D, Perbandt, M, Prester, A, Rohde, H, Betzel, C, Yefanov, O.
登録日2022-07-15
公開日2022-11-16
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Rapid and efficient room-temperature serial synchrotron crystallography using the CFEL TapeDrive.
Iucrj, 9, 2022
4UJ9
DownloadVisualize
BU of 4uj9 by Molmil
Protein Kinase A in complex with an Inhibitor
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 7-[(3S,4R)-4-[4-(trifluoromethyl)phenyl]carbonylpyrrolidin-3-yl]-3H-quinazolin-4-one, cAMP-dependent protein kinase catalytic subunit alpha, ...
著者Alam, K.A, Engh, R.A.
登録日2015-04-09
公開日2016-04-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Addressing the Glycine-Rich Loop of Protein Kinases by a Multi-Facetted Interaction Network: Inhibition of Pka and a Pkb Mimic.
Chemistry, 22, 2016
6RCM
DownloadVisualize
BU of 6rcm by Molmil
Human protein kinase CK2 alpha in complex with 2-cyano-2-propenamide compound 3
分子名称: (~{E})-~{N}-(5-~{tert}-butyl-1,3,4-thiadiazol-2-yl)-2-cyano-3-(3-methoxy-4-oxidanyl-phenyl)prop-2-enamide, 1,2-ETHANEDIOL, Casein kinase II subunit alpha, ...
著者Dalle Vedove, A, Zanforlin, E, Ribaudo, G, Zagotto, G, Battistutta, R, Lolli, G.
登録日2019-04-11
公開日2020-04-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A novel class of selective CK2 inhibitors targeting its open hinge conformation.
Eur.J.Med.Chem., 195, 2020
4UD6
DownloadVisualize
BU of 4ud6 by Molmil
Structure of methylviologen-treated anaerobically purified D. fructosovorans NiFe-hydrogenase
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ...
著者Volbeda, A, Martin, L, Liebgott, P.-P, Fontecilla-Camps, J.C.
登録日2014-12-08
公開日2015-03-25
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献[NiFe]-hydrogenases revisited: nickel-carboxamido bond formation in a variant with accrued O2-tolerance and a tentative re-interpretation of Ni-SI states.
Metallomics, 7, 2015
6S47
DownloadVisualize
BU of 6s47 by Molmil
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
分子名称: 18S rRNA (1707-MER), 28S ribosomal RNA, 40S ribosomal protein S0-A, ...
著者Kasari, V, Pochopien, A.A, Margus, T, Murina, V, Turnbull, K, Zhou, Y, Nissan, T, Graf, M, Novacek, J, Atkinson, G.C, Johansson, M.J.O, Wilson, D.N, Hauryliuk, V.
登録日2019-06-26
公開日2019-07-24
最終更新日2019-10-23
実験手法ELECTRON MICROSCOPY (3.28 Å)
主引用文献A role for the Saccharomyces cerevisiae ABCF protein New1 in translation termination/recycling.
Nucleic Acids Res., 47, 2019
5O2L
DownloadVisualize
BU of 5o2l by Molmil
Myosin VI motor domain in the Pre-Transition State
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, GLYCEROL, ...
著者Isabet, T, Benisty, H, Houdusse, A.
登録日2017-05-22
公開日2018-05-23
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献An intermediate along the recovery stroke of myosin VI revealed by X-ray crystallography and molecular dynamics.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4UDD
DownloadVisualize
BU of 4udd by Molmil
GR in complex with desisobutyrylciclesonide
分子名称: 1,2-ETHANEDIOL, 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, DESISOBUYTYRYL CICLESONIDE, ...
著者Edman, K, Hogner, A, Hussein, A, Bjursell, M, Aagaard, A, Backstrom, S, Bodin, C, Wissler, L, Jellesmark-Jensen, T, Cavallin, A, Karlsson, U, Nilsson, E, Lecina, D, Takahashi, R, Grebner, C, Lepisto, M, Guallar, V.
登録日2014-12-09
公開日2015-11-25
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Ligand Binding Mechanism in Steroid Receptors: From Conserved Plasticity to Differential Evolutionary Constraints.
Structure, 23, 2015
5O7Y
DownloadVisualize
BU of 5o7y by Molmil
Thebaine 6-O-demethylase (T6ODM) from Papaver somniferum in complex with succinate
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, NICKEL (II) ION, ...
著者Kluza, A, Niedzialkowska, E, Kurpiewska, K, Porebski, P.J, Borowski, T.
登録日2017-06-10
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Crystal structure of thebaine 6-O-demethylase from the morphine biosynthesis pathway.
J. Struct. Biol., 202, 2018
5OEW
DownloadVisualize
BU of 5oew by Molmil
Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with glutamate and positive allosteric modulator BPAM538
分子名称: 4-cyclopropyl-7-(3-methoxyphenoxy)-2,3-dihydro-1$l^{6},2,4-benzothiadiazine 1,1-dioxide, ACETATE ION, GLUTAMIC ACID, ...
著者Larsen, A.P, Frydenvang, K.A, Kastrup, J.S.
登録日2017-07-10
公開日2018-01-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献7-Phenoxy-Substituted 3,4-Dihydro-2H-1,2,4-benzothiadiazine 1,1-Dioxides as Positive Allosteric Modulators of alpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic Acid (AMPA) Receptors with Nanomolar Potency.
J. Med. Chem., 61, 2018

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon