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PDB: 88675 件

7PTJ
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C54S mutant of choline-sulfatase from E. meliloti CECT4857 bound to HEPES
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, Choline sulfatase, ...
著者Gavira, J.A, Martinez-Rodriguez, S.
登録日2021-09-27
公開日2022-08-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural insights into choline-O-sulfatase reveal the molecular determinants for ligand binding.
Acta Crystallogr D Struct Biol, 78, 2022
6P1E
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Cu-bound PmoF1 PCuAC domain (dimer)
分子名称: COPPER (II) ION, PmoF1, THIOCYANATE ION
著者Fisher, O.S, Sendzik, M.R, Rosenzweig, A.C.
登録日2019-05-19
公開日2019-09-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.605 Å)
主引用文献PCuAC domains from methane-oxidizing bacteria use a histidine brace to bind copper.
J.Biol.Chem., 294, 2019
8F54
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Top-down design of protein architectures with reinforcement learning
分子名称: RC_I_1
著者Borst, A.J, Baker, D.
登録日2022-11-11
公開日2023-05-10
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Top-down design of protein architectures with reinforcement learning.
Science, 380, 2023
6P3J
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Crystal structure of LigU
分子名称: (4E)-oxalomesaconate Delta-isomerase, CALCIUM ION, CHLORIDE ION, ...
著者Cory, S.A, Hogancamp, T.N, Raushel, F.M, Barondeau, D.P.
登録日2019-05-23
公開日2019-07-31
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Structure and Chemical Reaction Mechanism of LigU, an Enzyme That Catalyzes an Allylic Isomerization in the Bacterial Degradation of Lignin.
Biochemistry, 58, 2019
6N2I
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Lon protease AAA+ domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA-binding ATP-dependent protease La
著者Botos, I, Li, M, Wlodawer, A, Gustchina, A.
登録日2018-11-13
公開日2019-07-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献New insights into structural and functional relationships between LonA proteases and ClpB chaperones.
Febs Open Bio, 9, 2019
6Y1K
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Crystal structure of the unmodified A.17 antibody FAB fragment - L47R mutant
分子名称: FAB A.17 L47R mutant Heavy Chain, FAB A.17 L47R mutant Light Chain
著者Chatziefthimiou, S, Stepanova, A, Mokrushina, Y, Smirnov, I, Gabibov, A, Wilmanns, M.
登録日2020-02-12
公開日2020-09-16
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Multiscale computation delivers organophosphorus reactivity and stereoselectivity to immunoglobulin scavengers.
Proc.Natl.Acad.Sci.USA, 117, 2020
8EJJ
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Lassa virus glycoprotein complex (Josiah) bound to S370.7 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Perrett, H.R, Ward, A.B.
登録日2022-09-16
公開日2023-06-07
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.22 Å)
主引用文献Structural conservation of Lassa virus glycoproteins and recognition by neutralizing antibodies.
Cell Rep, 42, 2023
7Q48
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Solution structure of an intramolecular RNA G-quadruplex formed by the 6A8U17U mutant from a 22mer guanine-rich sequence within the 5'UTR of BCL-2 proto onco-gene
分子名称: RNA (5'-R(*GP*GP*GP*CP*CP*AP*UP*UP*GP*GP*GP*UP*GP*GP*GP*AP*UP*CP*UP*GP*GP*G)-3')
著者Wang, Z, Jurt, S, Dominguez-Martin, A, Johannsen, S, Sigel, R.K.O.
登録日2021-10-29
公開日2022-11-16
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Solution structure of an intramolecular RNA G-quadruplex formed by the 6A8U17U mutant from a 22mer guanine-rich sequence within the 5'UTR of BCL-2 proto onco-gene
To Be Published
6MLM
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H7 HA0 in complex with Fv from H7.5 IgG
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain Fv of H7.5 Fab, Hemagglutinin HA1 chain, ...
著者Pallesen, J, Turner, H.L, Ward, A.B.
登録日2018-09-27
公開日2019-02-20
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Potent anti-influenza H7 human monoclonal antibody induces separation of hemagglutinin receptor-binding head domains.
PLoS Biol., 17, 2019
8EG6
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huCaspase-6 in complex with inhibitor 2a
分子名称: (3R)-1-(ethanesulfonyl)-N-[4-(trifluoromethoxy)phenyl]piperidine-3-carboxamide, 1,2-ETHANEDIOL, CHLORIDE ION, ...
著者Zhao, Y, Fan, P, Liu, J, Wang, Y, Van Horn, K, Wang, D, Medina-Cleghorn, D, Lee, P, Bryant, C, Altobelli, C, Jaishankar, P, Ng, R.A, Ambrose, A.J, Tang, Y, Arkin, M.R, Renslo, A.R.
登録日2022-09-11
公開日2023-05-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Engaging a Non-catalytic Cysteine Residue Drives Potent and Selective Inhibition of Caspase-6.
J.Am.Chem.Soc., 145, 2023
8F4X
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Top-down design of protein architectures with reinforcement learning
分子名称: RC_I_1-H11
著者Borst, A.J, Baker, D.
登録日2022-11-11
公開日2023-05-10
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.01 Å)
主引用文献Top-down design of protein architectures with reinforcement learning.
Science, 380, 2023
7AH0
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Crystal structure of the de novo designed two-heme binding protein, 4D2
分子名称: 4D2, PROTOPORPHYRIN IX CONTAINING FE
著者Hutchins, G.H, Parnell, A.E, Anderson, J.L.R.
登録日2020-09-23
公開日2021-10-06
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献An expandable, modular de novo protein platform for precision redox engineering.
Proc.Natl.Acad.Sci.USA, 120, 2023
7AWG
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Crystal structure of human butyrylcholinesterase in complex with (2-((1-(benzenesulfonyl)-1H-indol-4-yl)oxy)ethyl)(benzyl)amine
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Brazzolotto, X, Wichur, T, Wieckowska, A.
登録日2020-11-08
公開日2021-09-29
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Development and crystallography-aided SAR studies of multifunctional BuChE inhibitors and 5-HT 6 R antagonists with beta-amyloid anti-aggregation properties.
Eur.J.Med.Chem., 225, 2021
8EJH
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Lassa virus glycoprotein complex (Josiah) bound to 12.1F Fab
分子名称: 12.1F Fab heavy chain, 12.1F Fab light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Perrett, H.R, Ward, A.B.
登録日2022-09-16
公開日2023-06-07
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.71 Å)
主引用文献Structural conservation of Lassa virus glycoproteins and recognition by neutralizing antibodies.
Cell Rep, 42, 2023
7PSZ
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Crystal structure of CaM in complex with CDZ (form 1)
分子名称: 1-[bis(4-chlorophenyl)methyl]-3-[(2~{R})-2-(2,4-dichlorophenyl)-2-[(2,4-dichlorophenyl)methoxy]ethyl]imidazole, CALCIUM ION, Calmodulin-1, ...
著者Mechaly, A.E, Leger, C, Haouz, A, Chenal, A.
登録日2021-09-24
公開日2022-08-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.898 Å)
主引用文献Dynamics and structural changes of calmodulin upon interaction with the antagonist calmidazolium.
Bmc Biol., 20, 2022
8EJI
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Lassa virus glycoprotein complex (Josiah) bound to 19.7E Fab
分子名称: 19.7E Fab heavy chain, 19.7E Fab light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Perrett, H.R, Ward, A.B.
登録日2022-09-16
公開日2023-06-07
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.81 Å)
主引用文献Structural conservation of Lassa virus glycoproteins and recognition by neutralizing antibodies.
Cell Rep, 42, 2023
8EG5
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huCaspase-6 in complex with inhibitor 3a
分子名称: (3R,5S)-1-(ethanesulfonyl)-5-phenyl-N-[4-(trifluoromethoxy)phenyl]piperidine-3-carboxamide (bound form), 1,2-ETHANEDIOL, Caspase-6 subunit p11, ...
著者Zhao, Y, Fan, P, Liu, J, Wang, Y, Van Horn, K, Wang, D, Medina-Cleghorn, D, Lee, P, Bryant, C, Altobelli, C, Jaishankar, P, Ng, R.A, Ambrose, A.J, Tang, Y, Arkin, M.R, Renslo, A.R.
登録日2022-09-11
公開日2023-05-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Engaging a Non-catalytic Cysteine Residue Drives Potent and Selective Inhibition of Caspase-6.
J.Am.Chem.Soc., 145, 2023
7B1O
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Crystal structure of the indoleamine 2,3-dioxygenase 1 (IDO1) in complex with compound 22
分子名称: 4-chloranyl-N-[(1R)-1-[(1S,5R)-3-quinolin-4-yloxy-6-bicyclo[3.1.0]hexanyl]propyl]benzamide, Indoleamine 2,3-dioxygenase 1
著者Lammens, A, Krapp, S, Lewis, R.T, Hamilton, M.M.
登録日2020-11-25
公開日2021-09-29
実験手法X-RAY DIFFRACTION (2.58 Å)
主引用文献Discovery of IACS-9779 and IACS-70465 as Potent Inhibitors Targeting Indoleamine 2,3-Dioxygenase 1 (IDO1) Apoenzyme.
J.Med.Chem., 64, 2021
8EJD
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Structure of lineage IV Lassa virus glycoprotein complex (strain Josiah)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Perrett, H.R, Ward, A.B.
登録日2022-09-16
公開日2023-06-07
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural conservation of Lassa virus glycoproteins and recognition by neutralizing antibodies.
Cell Rep, 42, 2023
8EJG
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Structure of lineage VII Lassa virus glycoprotein complex (strain Togo/2016/7082)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein GP1, ...
著者Perrett, H.R, Ward, A.B.
登録日2022-09-16
公開日2023-06-07
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.13 Å)
主引用文献Structural conservation of Lassa virus glycoproteins and recognition by neutralizing antibodies.
Cell Rep, 42, 2023
7PU9
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Crystal structure of CaM in complex with CDZ (form 2)
分子名称: 1-[bis(4-chlorophenyl)methyl]-3-[(2~{R})-2-(2,4-dichlorophenyl)-2-[(2,4-dichlorophenyl)methoxy]ethyl]imidazole, CALCIUM ION, Calmodulin-1
著者Mechaly, A.E, Leger, C, Haouz, A, Chenal, A.
登録日2021-09-28
公開日2022-08-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.279 Å)
主引用文献Dynamics and structural changes of calmodulin upon interaction with the antagonist calmidazolium.
Bmc Biol., 20, 2022
6PJB
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HIV-1 Protease NL4-3 WT in Complex with Lopinavir
分子名称: N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE, Protease NL4-3, SULFATE ION
著者Lockbaum, G.J, Rusere, L.N, Henes, M, Kosovrasti, K, Lee, S.K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
登録日2019-06-28
公開日2020-07-01
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.984 Å)
主引用文献Structural Analysis of Potent Hybrid HIV-1 Protease Inhibitors Containing Bis-tetrahydrofuran in a Pseudosymmetric Dipeptide Isostere.
J.Med.Chem., 63, 2020
6PJN
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HIV-1 Protease NL4-3 WT in Complex with LR2-41
分子名称: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3S,5S)-3-hydroxy-5-({1-[(methoxycarbonyl)amino]cyclopentane-1-carbonyl}amino)-1,6-diphenylhexan-2-yl]carbamate, Protease NL4-3, SULFATE ION
著者Lockbaum, G.J, Rusere, L.N, Henes, M, Kosovrasti, K, Lee, S.K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
登録日2019-06-28
公開日2020-07-01
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structural Analysis of Potent Hybrid HIV-1 Protease Inhibitors Containing Bis-tetrahydrofuran in a Pseudosymmetric Dipeptide Isostere.
J.Med.Chem., 63, 2020
7PVA
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1.9 Angstrom crystal structure of dimeric PorX, co-crystallized in the presence of zinc
分子名称: BERYLLIUM TRIFLUORIDE ION, CHLORIDE ION, FORMIC ACID, ...
著者Schmitz, C.A, Madej, M, Potempa, J, Sola, M.
登録日2021-10-01
公開日2022-12-14
最終更新日2022-12-28
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Response regulator PorX coordinates oligonucleotide signalling and gene expression to control the secretion of virulence factors.
Nucleic Acids Res., 50, 2022
6MR7
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DNA polymerase beta substrate complex with templating adenine and incoming Fapy-dGTP analog
分子名称: 1,2-ETHANEDIOL, 1-[2-amino-5-(formylamino)-6-oxo-1,6-dihydropyrimidin-4-yl]-2,5-anhydro-1,3-dideoxy-6-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-D-ribo-hexitol, CALCIUM ION, ...
著者Freudenthal, B.D, Smith, M.R, Wilson, S.H, Beard, W.A.
登録日2018-10-11
公開日2019-01-30
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.144 Å)
主引用文献A guardian residue hinders insertion of a Fapy•dGTP analog by modulating the open-closed DNA polymerase transition.
Nucleic Acids Res., 47, 2019

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