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PDB: 89111 件

5CL9
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Alkylpurine DNA glycosylase AlkD bound to DNA containing an abasic site and a free nucleobase (100% product at 240 hours)
分子名称: 7-methyl-3H-imidazo[4,5-c]pyridin-4-amine, AlkD, DNA (5'-D(*CP*CP*CP*GP*AP*(ORP)P*AP*GP*TP*CP*CP*G)-3'), ...
著者Mullins, E.A, Eichman, B.F.
登録日2015-07-16
公開日2015-10-28
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.538 Å)
主引用文献The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
8UBH
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Solution NMR structure of KaiB variant from Thermosynechococcus elongatus vestitus (KaiBTV-4)
分子名称: Circadian oscillation regulator
著者Ojoawo, A, Wayment-Steele, H.K, Kern, D.
登録日2023-09-23
公開日2023-10-25
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Predicting multiple conformations via sequence clustering and AlphaFold2.
Nature, 625, 2024
4REK
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BU of 4rek by Molmil
Crystal structure and charge density studies of cholesterol oxidase from Brevibacterium sterolicum at 0.74 ultra-high resolution
分子名称: Cholesterol oxidase, FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION
著者Zarychta, B, Lyubimov, A, Ahmed, M, Munshi, P, Guillot, B, Vrielink, A.
登録日2014-09-23
公開日2015-04-15
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (0.74 Å)
主引用文献Cholesterol oxidase: ultrahigh-resolution crystal structure and multipolar atom model-based analysis.
Acta Crystallogr.,Sect.D, 71, 2015
5ZZ1
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Probing the active center of catalase-phenol oxidase from Scytalidium thermophilum
分子名称: 3-AMINO-1,2,4-TRIAZOLE, CALCIUM ION, CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE, ...
著者Yuzugullu Karakus, Y, Trinh, C.H, Pearson, A.R, Ogel, Z.B, McPherson, M.J.
登録日2018-05-29
公開日2019-05-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Identification of the site of oxidase substrate binding in Scytalidium thermophilum catalase.
Acta Crystallogr D Struct Biol, 74, 2018
3LK9
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DNA polymerase beta with a gapped DNA substrate and dTMP(CF2)P(CF2)P
分子名称: 5'-O-[(R)-{[(R)-[difluoro(phosphono)methyl](hydroxy)phosphoryl](difluoro)methyl}(hydroxy)phosphoryl]thymidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ...
著者Zibinsky, M, Surya Prakash, G.K, Upton, T.G, Kashemirov, B.A, McKenna, C.E, Oertell, K, Goodman, M.F, Batra, V.K, Pedersen, L.C, Beard, W.A, Wilson, S.H.
登録日2010-01-27
公開日2011-01-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Synthesis and biological evaluation of fluorinated deoxynucleotide analogs based on bis-(difluoromethylene)triphosphoric acid.
Proc.Natl.Acad.Sci.USA, 107, 2010
5JRU
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BU of 5jru by Molmil
Crystal structure of Fe(II) unliganded H-NOX protein from C. subterraneus
分子名称: Methyl-accepting chemotaxis protein, PROTOPORPHYRIN IX CONTAINING FE
著者Bruegger, J, Hespen, C, Phillips-Piro, C.M, Marletta, M.A.
登録日2016-05-06
公開日2016-07-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.305 Å)
主引用文献Structural and Functional Evidence Indicates Selective Oxygen Signaling in Caldanaerobacter subterraneus H-NOX.
Acs Chem.Biol., 11, 2016
5XBP
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BU of 5xbp by Molmil
Oxygenase component of 3-nitrotoluene dioxygenase from Diaphorobacter sp. strain DS2
分子名称: 3NT oxygenase alpha subunit, 3NT oxygenase beta subunit, FE (III) ION, ...
著者Ramaswamy, S, Kumari, A, Singh, D, Gurunath, R.
登録日2017-03-21
公開日2017-04-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural and functional studies of ferredoxin and oxygenase components of 3-nitrotoluene dioxygenase from Diaphorobacter sp. strain DS2.
PLoS ONE, 12, 2017
4XH1
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BU of 4xh1 by Molmil
Crystal structure of Salmonella typhimurium propionate kinase in complex with AMPPNP and propionate
分子名称: GLYCEROL, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PROPANOIC ACID, ...
著者Murthy, A.M.V, Mathivanan, S, Chittori, S, Savithri, H.S, Murthy, M.R.N.
登録日2015-01-04
公開日2015-08-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of substrate- and nucleotide-bound propionate kinase from Salmonella typhimurium: substrate specificity and phosphate-transfer mechanism
Acta Crystallogr.,Sect.D, 71, 2015
8IU6
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BU of 8iu6 by Molmil
Crystal structure of peptidyl-tRNA hydrolase mutant from Enterococcus faecium
分子名称: GLYCEROL, Peptidyl-tRNA hydrolase
著者Pandey, R, Tripathi, S, Lanka, A.K, Zohib, M, Pal, R.K, Arora, A.
登録日2023-03-23
公開日2024-04-03
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of peptidyl-tRNA hydrolase mutant from Enterococcus faecium
To Be Published
7A38
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BU of 7a38 by Molmil
Crystal structure of the c-Src SH3 domain mutant V111L-N113S-T114S-Q128E at pH 6.0
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Proto-oncogene tyrosine-protein kinase Src, SULFATE ION
著者Camara-Artigas, A, Plaza-Garrido, M, Salinas-Garcia, M.C.
登録日2020-08-18
公開日2021-08-25
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Crystal structure of the c-Src SH3 domain mutant V111L-N113S-T114S-Q128E at pH 6.0
To be published
7H2O
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BU of 7h2o by Molmil
PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with Z234898257
分子名称: DIMETHYL SULFOXIDE, N-methyl-1-([1,2,4]triazolo[4,3-a]pyridin-3-yl)methanamine, Serine protease NS3, ...
著者Ni, X, Godoy, A.S, Marples, P.G, Fairhead, M, Balcomb, B.H, Tomlinson, C.W.E, Koekemoer, L, Aschenbrenner, J.C, Lithgo, R.M, Thompson, W, Wild, C, Williams, E.P, Winokan, M, Chandran, A.V, Fearon, D, Walsh, M.A, von Delft, F.
登録日2024-04-03
公開日2024-05-08
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.707 Å)
主引用文献PanDDA analysis group deposition of ZIKV NS2B-NS3 protease
To Be Published
8TXH
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BU of 8txh by Molmil
Crystal structure of KRAS G12D in complex with GDP and compound 14
分子名称: (4P)-2-amino-4-{4-[(1R,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}-6-(trifluoromethyl)quinazolin-7-yl}-7-fluoro-1-benzothiophene-3-carbonitrile, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
著者Chen, P, Irimia, A, Yang, Z.
登録日2023-08-23
公開日2023-11-08
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structure-Based Design and Synthesis of Potent and Selective KRAS G12D Inhibitors.
Acs Med.Chem.Lett., 14, 2023
5K54
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BU of 5k54 by Molmil
Human muscle fructose-1,6-bisphosphatase E69Q mutant in active R-state
分子名称: Fructose-1,6-bisphosphatase isozyme 2
著者Barciszewski, J, Wisniewski, J, Kolodziejczyk, R, Dzugaj, A, Jaskolski, M, Rakus, D.
登録日2016-05-23
公開日2017-06-07
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.717 Å)
主引用文献Structural studies of human muscle FBPase
To Be Published
5C1C
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BU of 5c1c by Molmil
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Deglycosylated Form
分子名称: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
著者Jameson, G.B, Williams, M.A.K, Loo, T.S, Kent, L.M, Melton, L.D, Mercadante, D.
登録日2015-06-13
公開日2015-07-01
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure and Properties of a Non-processive, Salt-requiring, and Acidophilic Pectin Methylesterase from Aspergillus niger Provide Insights into the Key Determinants of Processivity Control.
J.Biol.Chem., 291, 2016
5C1M
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BU of 5c1m by Molmil
Crystal structure of active mu-opioid receptor bound to the agonist BU72
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2R,3S,3aR,5aR,6R,11bR,11cS)-3a-methoxy-3,14-dimethyl-2-phenyl-2,3,3a,6,7,11c-hexahydro-1H-6,11b-(epiminoethano)-3,5a-methanonaphtho[2,1-g]indol-10-ol, CHOLESTEROL, ...
著者Huang, W.J, Manglik, A, Venkatakrishnan, A.J, Laeremans, T, Feinberg, E.N, Sanborn, A.L, Kato, H.E, Livingston, K.E, Thorsen, T.S, Kling, R, Granier, S, Gmeiner, P, Husbands, S.M, Traynor, J.R, Weis, W.I, Steyaert, J, Dror, R.O, Kobilka, B.K.
登録日2015-06-15
公開日2015-08-05
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Structural insights into mu-opioid receptor activation.
Nature, 524, 2015
5TRX
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BU of 5trx by Molmil
Room temperature structure of an extradiol ring-cleaving dioxygenase from B.fuscum determined using serial femtosecond crystallography
分子名称: CALCIUM ION, CHLORIDE ION, FE (II) ION, ...
著者Kovaleva, E.G, Oberthuer, D, Tolstikova, A, Mariani, V.
登録日2016-10-27
公開日2017-03-22
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Double-flow focused liquid injector for efficient serial femtosecond crystallography
Sci. Rep., 7, 2017
7A2K
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BU of 7a2k by Molmil
Crystal structure of the Fyn SH3 domain in space group P1 at pH 7.5
分子名称: SODIUM ION, Tyrosine-protein kinase Fyn
著者Camara-Artigas, A, Plaza-Garrido, M, Salinas-Garcia, M.C.
登録日2020-08-18
公開日2021-08-25
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of the Fyn SH3 domain in space group P1 at pH 7.5
To be published
7A0A
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BU of 7a0a by Molmil
Crystal structure of mouse CSAD in apo form
分子名称: Cysteine sulfinic acid decarboxylase, SODIUM ION, SULFATE ION
著者Mahootchi, E, Raasakka, A, Haavik, J, Kursula, P.
登録日2020-08-07
公開日2021-08-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The structure of cysteine sulphinic acid decarboxylase reveals structural determinants for substrate specificity of pyridoxal phosphate-dependent decarboxylases
To be published
5C2V
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BU of 5c2v by Molmil
Kuenenia stuttgartiensis Hydrazine Synthase
分子名称: CALCIUM ION, CHLORIDE ION, HEME C, ...
著者Dietl, A, Ferousi, C, Maalcke, W.J, Menzel, A, de Vries, S, Keltjens, J.T, Jetten, M.S.M, Kartal, B, Barends, T.R.M.
登録日2015-06-16
公開日2015-10-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The inner workings of the hydrazine synthase multiprotein complex.
Nature, 527, 2015
6ADD
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BU of 6add by Molmil
The crystal structure of Rv2747 from Mycobacterium tuberculosis in complex with CoA and NLQ
分子名称: Amino-acid acetyltransferase, COENZYME A, N~2~-ACETYL-L-GLUTAMINE
著者Das, U, Singh, E, Pal, R.K, Tiruttani Subhramanyam, U.K, Gourinath, S, Srinivasan, A.
登録日2018-07-31
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.301 Å)
主引用文献Structural insights into the substrate binding mechanism of novel ArgA from Mycobacterium tuberculosis
Int. J. Biol. Macromol., 125, 2019
3OXB
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BU of 3oxb by Molmil
Crystal structure of glycine riboswitch with single mutation
分子名称: Domain II of glycine riboswitch, MAGNESIUM ION
著者Huang, L, Serganov, A, Patel, D.J.
登録日2010-09-21
公開日2010-12-29
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.947 Å)
主引用文献Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
6ADO
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BU of 6ado by Molmil
LdCoroCC mutant-I486A
分子名称: Coronin-like protein
著者Karade, S.S, Ansari, A, Pratap, J.V.
登録日2018-08-01
公開日2019-10-09
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.502 Å)
主引用文献Molecular and structural analysis of a mechanical transition of helices in the L. donovani coronin coiled-coil domain.
Int.J.Biol.Macromol., 143, 2020
5GY0
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BU of 5gy0 by Molmil
Crystal structure of endoglucanase CelQ from Clostridium thermocellum complexed with cellotetraose
分子名称: BROMIDE ION, CALCIUM ION, CHLORIDE ION, ...
著者Jeng, W.Y, Liu, C.I, Wang, A.H.J.
登録日2016-09-21
公開日2017-09-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Crystal Structures of the C-Terminally Truncated Endoglucanase Cel9Q from Clostridium thermocellum Complexed with Cellodextrins and Tris.
Chembiochem, 20, 2019
3LNX
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BU of 3lnx by Molmil
Second PDZ domain from human PTP1E
分子名称: IODIDE ION, THIOCYANATE ION, Tyrosine-protein phosphatase non-receptor type 13
著者Zhang, J, Chang, A, Ke, H, Phillips Jr, G.N, Lee, A.L, Center for Eukaryotic Structural Genomics (CESG)
登録日2010-02-03
公開日2010-02-23
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.642 Å)
主引用文献Crystallographic and nuclear magnetic resonance evaluation of the impact of peptide binding to the second PDZ domain of protein tyrosine phosphatase 1E.
Biochemistry, 49, 2010
3OXM
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BU of 3oxm by Molmil
crystal structure of glycine riboswitch, Tl-Acetate soaked
分子名称: GLYCINE, MAGNESIUM ION, THALLIUM (I) ION, ...
著者Huang, L, Serganov, A, Patel, D.J.
登録日2010-09-21
公開日2010-12-29
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010

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件を2024-09-11に公開中

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