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PDB: 89111 件

7MT0
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Structure of the adeno-associated virus 9 capsid at pH 7.4
分子名称: Capsid protein VP1
著者Penzes, J.J, Chipman, P, Bhattacharya, N, Zeher, A, Huang, R, McKenna, R, Agbandje-McKenna, M.
登録日2021-05-12
公開日2021-06-02
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.82 Å)
主引用文献Adeno-associated Virus 9 Structural Rearrangements Induced by Endosomal Trafficking pH and Glycan Attachment.
J.Virol., 95, 2021
6HXS
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BU of 6hxs by Molmil
Human PARP16 (ARTD15) IN COMPLEX WITH CARBA-NAD
分子名称: ADENOSINE, CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE, GLYCEROL, ...
著者Karlberg, T, Pinto, A.F, Thorsell, A.G, Schuler, H.
登録日2018-10-18
公開日2019-10-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Human PARP16 (ARTD15) IN COMPLEX WITH CARBA-NAD
To Be Published
7W4T
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BU of 7w4t by Molmil
Structure of the M. tuberculosis HtrA S367A mutant at room-temperature
分子名称: Probable serine protease HtrA1
著者Gupta, A.K, Gopal, B.
登録日2021-11-29
公開日2022-12-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Allosteric Determinants in High Temperature Requirement A Enzymes Are Conserved and Regulate the Population of Active Conformations.
Acs Chem.Biol., 18, 2023
6RI9
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BU of 6ri9 by Molmil
Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex in non-swiveled state
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Abdelkareem, M, Saint-Andre, C, Takacs, M, Papai, G, Crucifix, C, Guo, X, Ortiz, J, Weixlbaumer, A.
登録日2019-04-23
公開日2019-07-03
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural Basis of Transcription: RNA Polymerase Backtracking and Its Reactivation.
Mol.Cell, 75, 2019
5C0I
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BU of 5c0i by Molmil
HAL-A02 carrying RQFGPDFPTI
分子名称: 1,2-ETHANEDIOL, Beta-2-microglobulin, CALCIUM ION, ...
著者Rizkallah, P.J, Bulek, A.M, Cole, D.K, Sewell, A.K.
登録日2015-06-12
公開日2016-05-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Hotspot autoimmune T cell receptor binding underlies pathogen and insulin peptide cross-reactivity.
J.Clin.Invest., 126, 2016
8TPO
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BU of 8tpo by Molmil
nhTMEM16 R432A mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+
分子名称: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, CALCIUM ION, Lipid scramblase nhTMEM16
著者Feng, Z, Accardi, A.
登録日2023-08-04
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (3.59 Å)
主引用文献Structural basis of closed groove scrambling by a TMEM16 protein.
Nat.Struct.Mol.Biol., 2024
5K16
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BU of 5k16 by Molmil
Crystal structure of free Ubiquitin-specific protease 12
分子名称: GLYCEROL, Ubiquitin carboxyl-terminal hydrolase 12, ZINC ION
著者Li, H, D'Andrea, A.D, Zheng, N.
登録日2016-05-17
公開日2016-07-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.599 Å)
主引用文献Allosteric Activation of Ubiquitin-Specific Proteases by beta-Propeller Proteins UAF1 and WDR20.
Mol.Cell, 63, 2016
4FAX
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BU of 4fax by Molmil
Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2012-05-22
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
7RLL
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BU of 7rll by Molmil
Crystal structure of ARF3 from Candida albicans in complex with guanosine-3'-monophosphate-5'-diphosphate
分子名称: Arf3p, GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE, MAGNESIUM ION
著者Stogios, P.J, Michalska, K, Evdokimova, E, Di Leo, R, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2021-07-25
公開日2021-08-11
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of ARF3 from Candida albicans in complex with guanosine-3'-monophosphate-5'-diphosphate
To Be Published
4XS6
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BU of 4xs6 by Molmil
Salmonella typhimurium AhpC W81F mutant
分子名称: Alkyl hydroperoxide reductase subunit C, POTASSIUM ION
著者Perkins, A, Nelson, K, Parsonage, D, Poole, L, Karplus, P.A.
登録日2015-01-21
公開日2016-01-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Experimentally Dissecting the Origins of Peroxiredoxin Catalysis.
Antioxid.Redox Signal., 28, 2018
4XSN
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BU of 4xsn by Molmil
Copper(II) bound to the Z-DNA form of d(CGCGCG)
分子名称: COPPER (II) ION, DNA (5'-D(*CP*(BGM)P*CP*GP*CP*GP)-3')
著者Rohner, M, Medina-Molner, A, Spingler, B.
登録日2015-01-22
公開日2016-02-03
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.452 Å)
主引用文献N,N,O and N,O,N Meridional cis Coordination of Two Guanines to Copper(II) by d(CGCGCG)2.
Inorg.Chem., 55, 2016
7W6W
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BU of 7w6w by Molmil
Crystal structure of a mutant Staphylococcus equorum manganese superoxide dismutase L169W
分子名称: AZIDE ION, MANGANESE (II) ION, Superoxide dismutase
著者Retnoningrum, D.S, Yoshida, H, Artarini, A.A, Ismaya, W.T.
登録日2021-12-02
公開日2022-12-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Introducing Intermolecular Interaction to Strengthen the Stability of MnSOD Dimer.
Appl.Biochem.Biotechnol., 195, 2023
8AMZ
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BU of 8amz by Molmil
Spinach 19S proteasome
分子名称: 26S proteasome non-ATPase regulatory subunit 1 homolog, 26S proteasome non-ATPase regulatory subunit 2 homolog, 26S proteasome regulatory subunit 7, ...
著者Kandolf, S, Grishkovskaya, I, Meinhart, A, Haselbach, D.
登録日2022-08-04
公開日2022-08-24
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structure of the plant 26S proteasome
Plant Communications, 3, 2022
8JHN
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BU of 8jhn by Molmil
Structure of MMF-GPR109A-G protein complex
分子名称: (E)-4-methoxy-4-oxidanylidene-but-2-enoic acid, G protein subunit alpha o1,Guanine nucleotide-binding protein G(o) subunit alpha, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Yadav, M.K, Sarma, P, Chami, M, Banerjee, R, Shukla, A.K.
登録日2023-05-24
公開日2024-03-06
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.75 Å)
主引用文献Structure-guided engineering of biased-agonism in the human niacin receptor via single amino acid substitution.
Nat Commun, 15, 2024
6EF2
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BU of 6ef2 by Molmil
Yeast 26S proteasome bound to ubiquitinated substrate (5T motor state)
分子名称: 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, 26S proteasome regulatory subunit 6B homolog, ...
著者de la Pena, A.H, Goodall, E.A, Gates, S.N, Lander, G.C, Martin, A.
登録日2018-08-15
公開日2018-10-17
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.27 Å)
主引用文献Substrate-engaged 26Sproteasome structures reveal mechanisms for ATP-hydrolysis-driven translocation.
Science, 362, 2018
5TCZ
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BU of 5tcz by Molmil
NMR solution structure of engineered Protoxin-II analog
分子名称: Beta/omega-theraphotoxin-Tp2a
著者Gibbs, A.C, Wickenden, A.D.
登録日2016-09-16
公開日2017-01-18
実験手法SOLUTION NMR
主引用文献Insensitivity to pain induced by a potent selective closed-state Nav1.7 inhibitor.
Sci Rep, 7, 2017
4Y23
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BU of 4y23 by Molmil
Crystal structure of T399A precursor mutant protein of gamma-glutamyl transpeptidase from Bacillus licheniformis
分子名称: Gamma glutamyl transpeptidase,Gamma-glutamyltranspeptidase, SODIUM ION
著者Pica, A, Merlino, A.
登録日2015-02-09
公開日2015-11-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献The maturation mechanism of gamma-glutamyl transpeptidases: Insights from the crystal structure of a precursor mimic of the enzyme from Bacillus licheniformis and from site-directed mutagenesis studies.
Biochim.Biophys.Acta, 1864, 2015
5TIP
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BU of 5tip by Molmil
The Structure of the Major Capsid protein of PBCV-1
分子名称: 6-deoxy-2,3-di-O-methyl-alpha-L-mannopyranose-(1-2)-beta-L-rhamnopyranose-(1-4)-beta-D-xylopyranose-(1-4)-[alpha-D-mannopyranose-(1-3)-alpha-D-rhamnopyranose-(1-3)][alpha-D-galactopyranose-(1-2)]alpha-L-fucopyranose-(1-3)-[beta-D-xylopyranose-(1-4)]beta-D-glucopyranose, MERCURY (II) ION, Major capsid protein, ...
著者Klose, T, De Castro, C, Speciale, I, Molinaro, A, Van Etten, J.L, Rossmann, M.G.
登録日2016-10-03
公開日2017-10-18
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the chlorovirus PBCV-1 major capsid glycoprotein determined by combining crystallographic and carbohydrate molecular modeling approaches.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6EGO
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BU of 6ego by Molmil
Crystal Structure of a de Novo Three-stranded Coiled Coil Peptide Containing an Ala Residue in the Second Coordination Sphere of the Hg(II)S3 Binding Site
分子名称: Hg(II)(GRAND CoilSerL12AL16C)3-, MERCURY (II) ION, ZINC ION
著者Ruckthong, L, Stuckey, J.A, Pecoraro, V.L.
登録日2018-08-20
公開日2019-04-03
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation.
Chemistry, 25, 2019
6I0P
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BU of 6i0p by Molmil
Structure of quinolinate synthase in complex with 6-mercaptopyridine-2,3-dicarboxylic acid
分子名称: 6-mercaptopyridine-2,3-dicarboxylic acid, CHLORIDE ION, IRON/SULFUR CLUSTER, ...
著者Volbeda, A, Fontecilla-Camps, J.C.
登録日2018-10-26
公開日2019-03-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Design of specific inhibitors of quinolinate synthase based on [4Fe-4S] cluster coordination.
Chem.Commun.(Camb.), 55, 2019
6RO4
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BU of 6ro4 by Molmil
Structure of the core TFIIH-XPA-DNA complex
分子名称: DNA repair protein complementing XP-A cells, DNA1, DNA2, ...
著者Kokic, G, Chernev, A, Tegunov, D, Dienemann, C, Urlaub, H, Cramer, P.
登録日2019-05-10
公開日2019-07-03
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural basis of TFIIH activation for nucleotide excision repair.
Nat Commun, 10, 2019
6OV2
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BU of 6ov2 by Molmil
Crystal structure of human claudin-9 in complex with Clostridium perfringens entertoxin C-terminal domain in closed form
分子名称: Claudin-9, GLYCEROL, Heat-labile enterotoxin B chain
著者Vecchio, A.J, Stroud, R.M.
登録日2019-05-06
公開日2019-09-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Claudin-9 structures reveal mechanism for toxin-induced gut barrier breakdown.
Proc.Natl.Acad.Sci.USA, 116, 2019
8IYH
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BU of 8iyh by Molmil
Structure of MK6892-GPR109A-G-protein complex
分子名称: 2-[[2,2-dimethyl-3-[3-(5-oxidanylpyridin-2-yl)-1,2,4-oxadiazol-5-yl]propanoyl]amino]cyclohexene-1-carboxylic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Yadav, M.K, Sarma, P, Chami, M, Banerjee, R, Shukla, A.K.
登録日2023-04-04
公開日2024-03-06
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure-guided engineering of biased-agonism in the human niacin receptor via single amino acid substitution.
Nat Commun, 15, 2024
6RWX
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BU of 6rwx by Molmil
Periplasmic inner membrane ring of the Shigella type 3 secretion system
分子名称: Lipoprotein MxiJ, Protein MxiG
著者Kamprad, A, Lunelli, M.
登録日2019-06-06
公開日2020-02-12
最終更新日2020-03-04
実験手法ELECTRON MICROSCOPY (3.55 Å)
主引用文献Cryo-EM structure of the Shigella type III needle complex.
Plos Pathog., 16, 2020
4QSE
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BU of 4qse by Molmil
Crystal structure of ATU4361 sugar transporter from Agrobacterium Fabrum c58, target efi-510558, with bound glycerol
分子名称: ABC-TYPE SUGAR TRANSPORTER, GLYCEROL
著者Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Chamala, S, Attonito, K.L, Scott Glenn, A, Chowdhury, S, Lafleur, J, Siedel, R.D, Hillerich, B, Love, J, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2014-07-03
公開日2014-08-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Crystal structure of maltoside transporter ATU4361 from Agrobacterium Fabrum, target EFI-510558
To be Published

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件を2024-09-11に公開中

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