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PDB: 89111 件

7FS4
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Structure of liver pyruvate kinase in complex with allosteric modulator 16
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, 4,4',5-trihydroxy-N-{[4-(3-hydroxybenzene-1-sulfonyl)phenyl]methyl}[1,1'-biphenyl]-2-sulfonamide, MAGNESIUM ION, ...
著者Lulla, A, Nilsson, O, Brear, P, Nain-Perez, A, Grotli, M, Hyvonen, M.
登録日2022-12-18
公開日2023-04-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Tuning liver pyruvate kinase activity up or down with a new class of allosteric modulators.
Eur.J.Med.Chem., 250, 2023
7FS9
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Structure of liver pyruvate kinase in complex with allosteric modulator 22
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, 4-[4-(4-aminobenzene-1-sulfonyl)piperazine-1-sulfonyl]benzene-1,2-diol, MAGNESIUM ION, ...
著者Lulla, A, Nilsson, O, Brear, P, Nain-Perez, A, Grotli, M, Hyvonen, M.
登録日2022-12-18
公開日2023-04-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.721 Å)
主引用文献Tuning liver pyruvate kinase activity up or down with a new class of allosteric modulators.
Eur.J.Med.Chem., 250, 2023
8T84
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Racemic mixture of amyloid beta segment 35-MVGGVV-40 forms heterochiral rippled beta-sheet, includes hexafluoroisopropanol
分子名称: 1,1,1,3,3,3-hexafluoropropan-2-ol, Racemic mixture of amyloid beta segment 35-MVGGVV-40
著者Sawaya, M.R, Raskatov, J.A, Hazari, A.
登録日2023-06-21
公開日2023-11-29
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.101 Å)
主引用文献Racemic Peptides from Amyloid beta and Amylin Form Rippled beta-Sheets Rather Than Pleated beta-Sheets.
J.Am.Chem.Soc., 145, 2023
4X0X
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The structure of AhpE from Mycobacterium tuberculosis revisited
分子名称: Putative peroxiredoxin MT2298
著者Pallo, A, Messens, J.
登録日2014-11-24
公開日2016-07-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Revisiting sulfur H-bonds in proteins: The example of peroxiredoxin AhpE.
Sci Rep, 6, 2016
7FSD
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Structure of liver pyruvate kinase in complex with allosteric modulator 44
分子名称: (1M)-N-({4-[(3,4-dihydroxyphenyl)methyl]phenyl}methyl)-3',4,4',5-tetrahydroxy[1,1'-biphenyl]-2-sulfonamide, 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, ...
著者Lulla, A, Nilsson, O, Brear, P, Nain-Perez, A, Grotli, M, Hyvonen, M.
登録日2022-12-18
公開日2023-04-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.769 Å)
主引用文献Tuning liver pyruvate kinase activity up or down with a new class of allosteric modulators.
Eur.J.Med.Chem., 250, 2023
8TFB
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BU of 8tfb by Molmil
Cryo-EM structure of the Methanosarcina mazei apo glutamin synthetase structure: dodecameric form
分子名称: Glutamine synthetase, MAGNESIUM ION
著者Schumacher, M.A.
登録日2023-07-09
公開日2023-11-15
最終更新日2023-11-29
実験手法ELECTRON MICROSCOPY (2.99 Å)
主引用文献M. mazei glutamine synthetase and glutamine synthetase-GlnK1 structures reveal enzyme regulation by oligomer modulation.
Nat Commun, 14, 2023
6DR1
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YopH PTP1B Chimera 2 PTPase
分子名称: Targeted effector protein
著者Morales, Y, Johnson, S.J, Hengge, A.C.
登録日2018-06-11
公開日2018-08-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A YopH PTP1B Chimera Shows the Importance of the WPD-Loop Sequence to the Activity, Structure, and Dynamics of Protein Tyrosine Phosphatases.
Biochemistry, 57, 2018
7FS2
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Structure of liver pyruvate kinase in complex with allosteric modulator 13
分子名称: (1P)-3',4,4',5-tetrahydroxy-N-{[4-(3-hydroxybenzene-1-sulfonyl)phenyl]methyl}[1,1'-biphenyl]-2-sulfonamide, 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, ...
著者Lulla, A, Nilsson, O, Brear, P, Nain-Perez, A, Grotli, M, Hyvonen, M.
登録日2022-12-18
公開日2023-04-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.374 Å)
主引用文献Tuning liver pyruvate kinase activity up or down with a new class of allosteric modulators.
Eur.J.Med.Chem., 250, 2023
4WWV
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BU of 4wwv by Molmil
Aminopeptidase APDkam598 from the archaeon Desulfurococcus kamchatkensis
分子名称: Aminopeptidase from family M42
著者Petrova, T, Boyko, K.M, Rakitina, T.V, Korzhenevskiy, D.A, Gorbacheva, M.A, Popov, V.O.
登録日2014-11-12
公開日2015-03-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.006 Å)
主引用文献Structure of the dodecamer of the aminopeptidase APDkam598 from the archaeon Desulfurococcus kamchatkensis.
Acta Crystallogr.,Sect.F, 71, 2015
7FS8
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Structure of liver pyruvate kinase in complex with allosteric modulator 21
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, 4-[4-(3-aminobenzene-1-sulfonyl)piperazine-1-sulfonyl]benzene-1,2-diol, MAGNESIUM ION, ...
著者Lulla, A, Nilsson, O, Brear, P, Nain-Perez, A, Grotli, M, Hyvonen, M.
登録日2022-12-18
公開日2023-04-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.098 Å)
主引用文献Tuning liver pyruvate kinase activity up or down with a new class of allosteric modulators.
Eur.J.Med.Chem., 250, 2023
7FSC
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BU of 7fsc by Molmil
Structure of liver pyruvate kinase in complex with allosteric modulator 42
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, N-({4-[(3,4-dihydroxyphenyl)methyl]phenyl}methyl)benzenesulfonamide, ...
著者Lulla, A, Nilsson, O, Brear, P, Nain-Perez, A, Grotli, M, Hyvonen, M.
登録日2022-12-18
公開日2023-04-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.855 Å)
主引用文献Tuning liver pyruvate kinase activity up or down with a new class of allosteric modulators.
Eur.J.Med.Chem., 250, 2023
5WN2
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APE1 exonuclease substrate complex with phosphoglycolate
分子名称: 1,2-ETHANEDIOL, 2-PHOSPHOGLYCOLIC ACID, CALCIUM ION, ...
著者Freudenthal, B.D, Whitaker, A.M.
登録日2017-07-31
公開日2018-02-28
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.288 Å)
主引用文献Molecular snapshots of APE1 proofreading mismatches and removing DNA damage.
Nat Commun, 9, 2018
6DRD
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BU of 6drd by Molmil
RNA Pol II(G)
分子名称: DNA-directed RNA polymerase II subunit GRINL1A, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11-a, ...
著者Yu, X, Jishage, M, Shi, Y, Ganesan, S, Sali, A, Chait, B.T, Asturias, F, Roeder, R.G.
登録日2018-06-11
公開日2019-06-12
最終更新日2019-12-04
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1.
Nat. Struct. Mol. Biol., 25, 2018
6DRV
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BU of 6drv by Molmil
Beta-galactosidase
分子名称: Beta-galactosidase
著者Cianfrocco, M.A, Lahiri, I, DiMaio, F, Leschziner, A.E.
登録日2018-06-13
公開日2018-07-11
最終更新日2020-01-08
実験手法ELECTRON MICROSCOPY (2.2 Å)
主引用文献cryoem-cloud-tools: A software platform to deploy and manage cryo-EM jobs in the cloud.
J. Struct. Biol., 203, 2018
8TGE
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BU of 8tge by Molmil
Crystal structure of the Methanosarcina mazei glutamine synthetase in complex with GlnK1
分子名称: Glutamine synthetase, Nitrogen regulatory protein GlnK1
著者Schumacher, M.A.
登録日2023-07-12
公開日2023-11-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献M. mazei glutamine synthetase and glutamine synthetase-GlnK1 structures reveal enzyme regulation by oligomer modulation.
Nat Commun, 14, 2023
6JCE
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BU of 6jce by Molmil
NMR solution and X-ray crystal structures of a DNA containing both right-and left-handed parallel-stranded G-quadruplexes
分子名称: 29-mer DNA
著者Winnerdy, F.R, Bakalar, B, Maity, A, Vandana, J.J, Mechulam, Y, Schmitt, E, Phan, A.T.
登録日2019-01-28
公開日2019-07-10
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR solution and X-ray crystal structures of a DNA molecule containing both right- and left-handed parallel-stranded G-quadruplexes.
Nucleic Acids Res., 47, 2019
5AQB
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BU of 5aqb by Molmil
DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
分子名称: 3G61_DB15V4, GREEN FLUORESCENT PROTEIN
著者Batyuk, A, Wu, Y, Honegger, A, Heberling, M, Plueckthun, A.
登録日2015-09-21
公開日2016-03-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Darpin-Based Crystallization Chaperones Exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
J.Mol.Biol., 428, 2016
8PDG
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BU of 8pdg by Molmil
The phosphatase and C2 domains of SHIP1 with covalent Z2738285202
分子名称: DIMETHYL SULFOXIDE, Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1, ~{N}-(8-chloranylquinolin-2-yl)propanamide
著者Bradshaw, W.J, Moreira, T, Scacioc, A, Bountra, C, Chalk, R, von Delft, F, Brennan, P.E, Gileadi, O.
登録日2023-06-12
公開日2023-06-28
最終更新日2024-04-17
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Regulation of inositol 5-phosphatase activity by the C2 domain of SHIP1 and SHIP2.
Structure, 32, 2024
6H6D
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BU of 6h6d by Molmil
Crystal structures of the murine class I major histocompatibility complex H-2Db in complex with adenovirus-derived peptide Ad10
分子名称: Beta-2-microglobulin, CHLORIDE ION, Early E1A protein, ...
著者Achour, A, Sandalova, T, Han, X.
登録日2018-07-27
公開日2019-08-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of H-2Db and H-2Dbm13 with cancer-associated Ad 10 peptide reveal that subtle changes in the peptide environment impact thermostability and alloreactivity
to be published
5F4V
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BU of 5f4v by Molmil
Crystal structure of the human sperm Izumo1 residues 22-268
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Izumo sperm-egg fusion protein 1
著者Aydin, H, Sultana, A, Lee, J.E.
登録日2015-12-03
公開日2016-06-15
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Molecular architecture of the human sperm IZUMO1 and egg JUNO fertilization complex.
Nature, 534, 2016
5ZA2
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Fox-4 beta-lactamase complexed with avibactam
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Beta-lactamase, ...
著者Nukaga, M, Hoshino, T, Papp-Wallace, K.M, Bonomo, R.A.
登録日2018-02-06
公開日2018-03-07
最終更新日2018-05-09
実験手法X-RAY DIFFRACTION (1.503 Å)
主引用文献Probing the Mechanism of Inactivation of the FOX-4 Cephamycinase by Avibactam
Antimicrob. Agents Chemother., 62, 2018
4WYY
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BU of 4wyy by Molmil
Crystal Structure of P. aeruginosa AmpC
分子名称: Beta-lactamase, DIMETHYL SULFOXIDE, GLYCEROL, ...
著者Ferguson, A.D.
登録日2014-11-18
公開日2015-08-05
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献4,5-Disubstituted 6-Aryloxy-1,3-dihydrobenzo[c][1,2]oxaboroles Are Broad-Spectrum Serine beta-Lactamase Inhibitors.
ACS Infect Dis, 1, 2015
6TMV
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Structure of the chaperonin gp146 from the bacteriophage EL (Pseudomonas aeruginosa) in the apo state
分子名称: Putative GroEL-like chaperonine protein
著者Bracher, A, Wang, H, Paul, S.S, Wischnewski, N, Hartl, F.U, Hayer-Hartl, M.
登録日2019-12-05
公開日2020-04-22
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献Structure and conformational cycle of a bacteriophage-encoded chaperonin.
Plos One, 15, 2020
7ZGQ
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BU of 7zgq by Molmil
Polymerase module of yeast CPF in complex with the yPIM of Cft2
分子名称: Cleavage factor two protein 2, Polyadenylation factor subunit 2, Protein CFT1, ...
著者Rodriguez-Molina, J.B, Passmore, L.A.
登録日2022-04-04
公開日2022-05-25
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Mpe1 senses the binding of pre-mRNA and controls 3' end processing by CPF.
Mol.Cell, 82, 2022
7ZGR
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Polymerase module of yeast CPF in complex with Mpe1, the yPIM of Cft2 and the pre-cleaved CYC1 RNA
分子名称: Cleavage factor two protein 2, MPE1 isoform 1, Polyadenylation factor subunit 2, ...
著者Rodriguez-Molina, J.B, Passmore, L.A.
登録日2022-04-04
公開日2022-05-25
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Mpe1 senses the binding of pre-mRNA and controls 3' end processing by CPF.
Mol.Cell, 82, 2022

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件を2024-09-11に公開中

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