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PDB: 88675 results

5KAU
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BU of 5kau by Molmil
The structure of SAV2435 bound to RHODAMINE 6G
Descriptor: GLYCEROL, RHODAMINE 6G, SA2223 protein
Authors:Moreno, A, Wade, H.
Deposit date:2016-06-02
Release date:2016-08-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Solution Binding and Structural Analyses Reveal Potential Multidrug Resistance Functions for SAV2435 and CTR107 and Other GyrI-like Proteins.
Biochemistry, 55, 2016
6F9K
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BU of 6f9k by Molmil
Tryptophan Repressor TrpR from E.coli with 5-methyl-L-tryptophan as ligand
Descriptor: 5-methyl-L-tryptophan, SULFATE ION, Trp operon repressor
Authors:Stiel, A.C, Shanmugaratnam, S, Hocker, B.
Deposit date:2017-12-14
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Tryptophan Repressor TrpR from E.coli: A ligand binding study
To Be Published
5MYD
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BU of 5myd by Molmil
Convergent evolution involving dimeric and trimeric dUTPases in signalling.
Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DUTPase, MAGNESIUM ION
Authors:Donderis, J, Bowring, J, Maiques, E, Ciges-Tomas, J.R, Alite, C, Mehmedov, I, Tormo-Mas, M.A, Penades, J.R, Marina, A.
Deposit date:2017-01-26
Release date:2017-09-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Convergent evolution involving dimeric and trimeric dUTPases in pathogenicity island mobilization.
PLoS Pathog., 13, 2017
5KBM
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BU of 5kbm by Molmil
Candida Albicans Superoxide Dismutase 5 (SOD5), D113N Mutant
Descriptor: COPPER (I) ION, Cell surface Cu-only superoxide dismutase 5, SULFATE ION
Authors:Galaleldeen, A, Peterson, R.L, Villarreal, J, Taylor, A.B, Hart, P.J.
Deposit date:2016-06-03
Release date:2016-08-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.416 Å)
Cite:The Phylogeny and Active Site Design of Eukaryotic Copper-only Superoxide Dismutases.
J.Biol.Chem., 291, 2016
6S9L
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BU of 6s9l by Molmil
Designed Armadillo Repeat protein Lock1 bound to (KR)4KLSF target
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, KR4KLSF Lock1, LYS-ARG-LYS-ARG-LYS-ARG-LYS-ARG-LYS-LEU-SER-PHE
Authors:Ernst, P, Zosel, F, Reichen, C, Schuler, B, Pluckthun, A.
Deposit date:2019-07-15
Release date:2020-02-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-Guided Design of a Peptide Lock for Modular Peptide Binders.
Acs Chem.Biol., 15, 2020
5MCK
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BU of 5mck by Molmil
Radiation damage to GH7 Family Cellobiohydrolase from Daphnia pulex: Dose (DWD) 16.2 MGy
Descriptor: Cellobiohydrolase CHBI, GLYCEROL, SULFATE ION
Authors:Bury, C.S, McGeehan, J.E, Ebrahim, A, Garman, E.F.
Deposit date:2016-11-09
Release date:2017-01-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:OH cleavage from tyrosine: debunking a myth.
J Synchrotron Radiat, 24, 2017
7YXP
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BU of 7yxp by Molmil
Crystal structure of WT AncGR2-LBD WT bound to dexamethasone and SHP coregulator fragment
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Ancestral Glucocorticoid Receptor2, DEXAMETHASONE, ...
Authors:Jimenez-Panizo, A, Estebanez-Perpina, E, Fuentes-Prior, P.
Deposit date:2022-02-16
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.36 Å)
Cite:The multivalency of the glucocorticoid receptor ligand-binding domain explains its manifold physiological activities.
Nucleic Acids Res., 50, 2022
6F81
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BU of 6f81 by Molmil
AKR1B1 at 0.75 MGy radiation dose.
Descriptor: Aldose reductase, CITRIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Castellvi, A, Juanhuix, J.
Deposit date:2017-12-12
Release date:2019-03-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Efficacy of aldose reductase inhibitors is affected by oxidative stress induced under X-ray irradiation.
Sci Rep, 9, 2019
5K04
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BU of 5k04 by Molmil
The NatB Acetyltransferase Complex Bound To CoA and MES
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, COENZYME A, N-terminal acetyltransferase B complex subunit NAT3, ...
Authors:Hong, H, Cai, Y, Zhang, S, Han, A.
Deposit date:2016-05-17
Release date:2017-04-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Basis of Substrate Specific Acetylation by N-Terminal Acetyltransferase NatB
Structure, 25, 2017
5KD2
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BU of 5kd2 by Molmil
BT_4244 metallopeptidase from Bacteroides thetaiotaomicron
Descriptor: 1,2-ETHANEDIOL, ZINC ION, metallopeptidase
Authors:Noach, I, Boraston, A.B.
Deposit date:2016-06-07
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6FBB
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BU of 6fbb by Molmil
Crystal structure of 14-3-3 sigma in complex with wild-type Shroom3
Descriptor: 14-3-3 protein sigma, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Leysen, S, Meijer, F.A, Milroy, L.G, Ottmann, C.
Deposit date:2017-12-18
Release date:2018-03-14
Last modified:2018-05-09
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Characterization of Coding/Noncoding Variants forSHROOM3in Patients with CKD.
J. Am. Soc. Nephrol., 29, 2018
6SAZ
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BU of 6saz by Molmil
Cleaved human fetuin-b in complex with crayfish astacin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Astacin, ...
Authors:Gomis-Ruth, F.X, Guevara, T, Cuppari, A, Korschgen, H, Schmitz, C, Kuske, M, Yiallouros, I, Floehr, J, Jahnen-Dechent, W, Stocker, W.
Deposit date:2019-07-18
Release date:2019-10-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:The C-terminal region of human plasma fetuin-B is dispensable for the raised-elephant-trunk mechanism of inhibition of astacin metallopeptidases.
Sci Rep, 9, 2019
5KDJ
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BU of 5kdj by Molmil
ZmpB metallopeptidase from Clostridium perfringens
Descriptor: F5/8 type C domain protein, GLYCEROL, SODIUM ION, ...
Authors:Noach, I, Ficko-Blean, E, Stuart, C, Boraston, A.B.
Deposit date:2016-06-08
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7YXR
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BU of 7yxr by Molmil
Crystal structure of mutant AncGR2-LBD (Y545A) bound to dexamethasone and SHP coregulator fragment
Descriptor: Ancestral Glucocorticoid Receptor2, DEXAMETHASONE, FORMIC ACID, ...
Authors:Jimenez-Panizo, A, Estebanez-Perpina, E, Fuentes-Prior, P.
Deposit date:2022-02-16
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The multivalency of the glucocorticoid receptor ligand-binding domain explains its manifold physiological activities.
Nucleic Acids Res., 50, 2022
7UZ0
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BU of 7uz0 by Molmil
AntiT-tRNA flip UCCA
Descriptor: AntiT-tRNA flip UCCA, MAGNESIUM ION, STRONTIUM ION
Authors:Price, I.R, Grigg, J.C, Ke, A.
Deposit date:2022-05-07
Release date:2022-06-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:tRNA Fusion to Streamline RNA Structure Determination: Case Studies in Probing Aminoacyl-tRNA Sensing Mechanisms by the T-Box Riboswitch
Crystals, 12, 2022
5MEJ
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BU of 5mej by Molmil
Structural study of the X-ray induced enzymatic reduction of molecular oxygen to water for laccase from Steccherinum murashkinskyi. First structure of the series with 3 min total X-ray exposition time.
Descriptor: CITRIC ACID, COPPER (II) ION, Laccase 2, ...
Authors:Polyakov, K.M, Fedorova, T.V, Gavryushov, S, Popov, A.N.
Deposit date:2016-11-15
Release date:2017-05-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural study of the X-ray-induced enzymatic reduction of molecular oxygen to water by Steccherinum murashkinskyi laccase: insights into the reaction mechanism.
Acta Crystallogr D Struct Biol, 73, 2017
6SBN
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BU of 6sbn by Molmil
Polyester hydrolase PE-H of Pseudomonas aestusnigri
Descriptor: ACETATE ION, SODIUM ION, polyester hydrolase
Authors:Bollinger, A, Thies, S, Kobus, S, Hoeppner, A, Smits, S.H.J, Jaeger, K.-E.
Deposit date:2019-07-22
Release date:2020-02-26
Last modified:2020-03-11
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:A Novel Polyester Hydrolase From the Marine BacteriumPseudomonas aestusnigri -Structural and Functional Insights.
Front Microbiol, 11, 2020
6FBY
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BU of 6fby by Molmil
Crystal structure of C-terminal modified Tau peptide-hybrid 4.2b with 14-3-3sigma
Descriptor: (2~{R})-2-[(~{S})-(3-methylphenyl)-phenyl-methyl]pyrrolidine, 14-3-3 protein sigma, ACE-ARG-THR-PRO-SEP-LEU-PRO-GLY, ...
Authors:Andrei, S.A, Meijer, F.A, Ottmann, C, Milroy, L.G.
Deposit date:2017-12-20
Release date:2018-05-16
Last modified:2019-02-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Inhibition of 14-3-3/Tau by Hybrid Small-Molecule Peptides Operating via Two Different Binding Modes.
ACS Chem Neurosci, 9, 2018
7N4F
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BU of 7n4f by Molmil
Ni-bound crystal structure of the engineered cyt cb562 variant, AB2-H100A, crystallized in the presence of Ni(II)
Descriptor: HEME C, NICKEL (II) ION, Soluble cytochrome b562
Authors:Choi, T.S, Tezcan, F.A.
Deposit date:2021-06-04
Release date:2022-06-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Overcoming universal restrictions on metal selectivity by protein design.
Nature, 603, 2022
5M85
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BU of 5m85 by Molmil
Three-dimensional structure of the intermediate state of GAF3 from Slr1393 of Synechocystis sp. PCC6803
Descriptor: (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PHYCOCYANOBILIN, ...
Authors:Xu, X.-L, Zhao, K.-H, Gaertner, W, Hoeppner, A.
Deposit date:2016-10-28
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural elements regulating the photochromicity in a cyanobacteriochrome
Proc.Natl.Acad.Sci.USA, 2020
7N4G
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BU of 7n4g by Molmil
Co-bound crystal structure of the engineered cyt cb562 variant, AB2-H100A, crystallized in the presence of Co(II)
Descriptor: COBALT (II) ION, HEME C, Soluble cytochrome b562
Authors:Choi, T.S, Tezcan, F.A.
Deposit date:2021-06-04
Release date:2022-06-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Overcoming universal restrictions on metal selectivity by protein design.
Nature, 603, 2022
8TCD
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BU of 8tcd by Molmil
Structure of Alistipes sp. 3-Keto-beta-glucopyranoside-1,2-Lyase AL1
Descriptor: ACETATE ION, COBALT (II) ION, GLYCEROL, ...
Authors:Lazarski, A.C, Worrall, L.J, Strynadka, N.C.J.
Deposit date:2023-06-30
Release date:2024-06-12
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:An alternative broad-specificity pathway for glycan breakdown in bacteria.
Nature, 631, 2024
7YXO
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BU of 7yxo by Molmil
Crystal structure of WT AncGR2-LBD bound to dexamethasone and SHP coregulator fragment
Descriptor: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Ancestral Glucocorticoid Receptor2, DEXAMETHASONE, ...
Authors:Jimenez-Panizo, A, Estebanez-Perpina, E, Fuentes-Prior, P.
Deposit date:2022-02-16
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:The multivalency of the glucocorticoid receptor ligand-binding domain explains its manifold physiological activities.
Nucleic Acids Res., 50, 2022
6PGZ
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BU of 6pgz by Molmil
MTSL labelled T4 lysozyme pseudo-wild type V75C mutant
Descriptor: CHLORIDE ION, Endolysin, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate
Authors:Cuneo, M.J, Myles, D.A, Li, L.
Deposit date:2019-06-25
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Making hydrogens stand out: Enhanced neutron diffraction from biological crystals using dynamic nuclear polarization
To be published
5MEW
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BU of 5mew by Molmil
The study of the X-ray induced enzymatic reduction of molecular oxygen to water for laccase from Steccherinum murashkinskyi. Second structure of the series with total exposition time 33 min.
Descriptor: CITRIC ACID, COPPER (II) ION, Laccase 2, ...
Authors:Polyakov, K.M, Fedorova, T.N, Gavryushov, S, Popov, A.N, Glazunova, O.A.
Deposit date:2016-11-16
Release date:2017-05-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural study of the X-ray-induced enzymatic reduction of molecular oxygen to water by Steccherinum murashkinskyi laccase: insights into the reaction mechanism.
Acta Crystallogr D Struct Biol, 73, 2017

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